Contig 001003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016B13Sequence573018420ref|XP_009598164.1|3e-25PREDICTED: valine--tRNA ligase-like [Nicotiana tomentosiformis]557001003 (8)ref|XP_007216170.1|2e-38hypothetical protein PRUPE_ppa015664mg [Prunus persica] gb|EMJ17369.1| hypotheti
JMFN032G02Sequence618001003 (8)gb|AFJ66168.1|9e-25hypothetical protein 11M19.12 [Arabidopsis halleri]
JMFN035I21Sequence630001003 (8)gb|AFJ66168.1|1e-39hypothetical protein 11M19.12 [Arabidopsis halleri]
JMFS056D03Sequence627001003 (8)ref|XP_011073263.1|7e-132PREDICTED: LOW QUALITY PROTEIN: respiratory burst oxidase homolog protein C-lik
JMSF051D09Sequence660001003 (8)ref|XP_004503030.1|4e-23PREDICTED: respiratory burst oxidase homolog protein C-like [Cicer arietinum]699001003 (8)ref|XP_010104610.1|3e-33Zinc finger CCCH domain-containing protein 62 [Morus notabilis] gb|EXC01341.1| Z
JMSF052D09Sequence662001003 (8)ref|XP_004503030.1|1e-23PREDICTED: respiratory burst oxidase homolog protein C-like [Cicer arietinum]433001003 (8)ref|XP_002529187.1|3e-26hypothetical protein RCOM_0684740 [Ricinus communis] gb|EEF33201.1| hypothetical

Alignment

This contig is upended


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rJMFF016B13-                                                                AATGAA
                      ____________________________________________________________
consensus                                                                   AATGAA
 
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rJMFF016B13-          CTCCCACTTTTACAGCACAAATACATAAGTCCCTATTGGTAACCAGTTTTATGATCTCTT
rJMSF051D09-                            AAATACATAAGTCCCTATTGGTAACCAGTTTTATGATCTCTT
                      ____________________________________________________________
consensus             CTCCCACTTTTACAGCACAAATACATAAGTCCCTATTGGTAACCAGTTTTATGATCTCTT
 
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rJMFF016B13-          CTATTTTTTTATTTTTTTTTTAANAAGGTGCAAAATACATAAACAGNGGCTANAAGGTTT
rJMSF051D09-          CTATTTTTTTATTTTTTTTTTAAGAAGGGGCAAAATACATAAACNGGGGCTAGAAGGTTT
                      ____________________________________________________________
consensus             CTATTTTTTTATTTTTTTTTTAAGAAGGTGCAAAATACATAAACAGGGGCTAGAAGGTTT
 
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rJMFF016B13-          TAAACTTCATATGAATGTGAAATCATTTCTTGGTTCANCATGCCATANCTCTCTTTTACA
rJMSF052D09-                                                   GCCATAGCTCTCTTTTACA
rJMSF051D09-          TAAACTTCATATGAANGNGAATTCATTTCTNGGTTCAGCANGCCATAGCTCTCTTTTACA
                      ____________________________________________________________
consensus             TAAACTTCATATGAATGTGAATTCATTTCTTGGTTCAGCATGCCATAGCTCTCTTTTACA
 
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rJMFF016B13-          ATTCTTCCTGCAACAACCCTTGTACCGCATGGAGGAGGAGCACTACCGCTCCTGGAAGCA
rJMSF052D09-          ATTCTTCCNGCAACAACCCTNGTACCGCANGGAGGAGGAGCACTAGCGCNCCNGGAAGNA
rJMSF051D09-          ATTCTTCCNGCAACAACCCTTGTACCGCAGGGAGGAGGAGCACTAGCGCTCCNGGAAGCA
JMFN035I21+                                                                GGAAGCA
                      ____________________________________________________________
consensus             ATTCTTCCTGCAACAACCCTTGTACCGCATGGAGGAGGAGCACTAGCGCTCCTGGAAGCA
 
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rJMFF016B13-          ATATTGAACATTTCATATACATTTGTTCAAACAAAACAACATCTTCAGTGCATGCATCAC
rJMSF052D09-          ATATTGAACATTTCATATACATTNGTTCAAACAAAACAACATCTTCNGGGCANGCATCAC
rJMSF051D09-          ATATTGAACATTTCATATACATTTGTTCAAACAAAACAACATCTTCAGNGCANGCATCAC
JMFN035I21+           ATATTGAACATTTCATATACA-TTGTTCAAACAAAACAACATCTTCAGTGCATGCATCAC
                      ____________________________________________________________
consensus             ATATTGAACATTTCATATACATTTGTTCAAACAAAACAACATCTTCAGTGCATGCATCAC
 
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rJMFF016B13-          CTTTGCAGTTCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
rJMSF052D09-          CTTTGCAGTTCCATACAAAACTANATACAGGATACTTCTTCTCTCCACCACCATNGANAA
rJMSF051D09-          CTTTGCAGTTCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
JMFN035I21+           CTTGCAGTNTCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
                      ____________________________________________________________
consensus             CTTTGCAGTTCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
 
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rJMFF016B13-          CATCAATATGCTCCTTGATACNCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
rJMSF052D09-          CATCAATANGCTCCTNGATACGCNCAANAAACGNANCCTNGTNGCCCGTCAANCNCAATC
rJMSF051D09-          CATCAATATGCTCCTTGATACGCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
JMFN035I21+           CATCAATATGCTCCTTGATACGCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
                      ____________________________________________________________
consensus             CATCAATATGCTCCTTGATACGCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
 
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rJMFF016B13-          CATGCTTCCTTAAATAGACCTTGCACTGATCAATTTTCAGCTTTTCAATCTCACCACCAT
rJMSF052D09-          CNNGCTNCCTTAAATAGACCTTGCNCNGANCAATTTTCAGCTTTTCAATCTCACCANCNT
rJMSF051D09-          CANGCTTCCTTAAATAGACCTTGCACNGATCAATTTTCAGCTTTTCAATCTCACCAGCAT
JMFS056D03+                                                                    CAT
JMFN035I21+           CATGCTTCCTTAAATAGACCTTGCACTGATCAATTTTCAGCTTTTCAATCTCACCAGCAT
                      ____________________________________________________________
consensus             CATGCTTCCTTAAATAGACCTTGCACTGATCAATTTTCAGCTTTTCAATCTCACCAGCAT
 
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rJMFF016B13-          TCAAAGGGAGAAACTGCAAAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
rJMSF052D09-          TCAAAGGGANAANCNGCNNAACAGTNGACAAACATGTATNGACCACTTCGGTANCTGAAC
rJMSF051D09-          TCAAAGGGAGAAACNGCANAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
JMFS056D03+           TCAAAGGGAGAAACTGCAGCACAGTTGACAAACATGTATTGACCACTTCTGTATCTGAAC
JMFN035I21+           TCAAAGGGAGAAACTGCAGAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
                      ____________________________________________________________
consensus             TCAAAGGGAGAAACTGCAGAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
 
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rJMFF016B13-          CCC                                                         
rJMSF052D09-          CCC                                                         
rJMSF051D09-          CCCNGNGGCTNGGACATATGAAGGGACAAAACATTTCCAGAATAGA-------CTTAAGA
JMFS056D03+           CCCTGTGGCTTTGACATATGAAGGGACAAAACATTTCCAGGATAGACTGCCACCTTAAGA
JMFN035I21+           CCCTGTGGCTTGGACATATGAAGGGACAAAACATTTCCAGAATAGACTGCCACCTTAAGA
                      ____________________________________________________________
consensus             CCCTGTGGCTTGGACATATGAAGGGACAAAACATTTCCAGAATAGACTGCCACCTTAAGA
 
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rJMSF051D09-          ATCTTGACAGGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
JMFS056D03+           ATCTTGACAGGCTTAATGCTAGATCTGAAAGCTCTGAGCAGTCTTTCACAACCATAAATT
JMFN035I21+           ATCTTGACAGGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
JMFN032G02+                    GGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
                      ____________________________________________________________
consensus             ATCTTGACAGGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
 
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rJMSF051D09-          ACCATGGGAACAGCCAAGTACATCCATGTC                              
JMFS056D03+           ACCATGGGAACAGCCAAGTACATCCATGTC                              
JMFN035I21+           ACCATGGGAACAGCCAAGTACATCCATGTCTGTCATCACAACTTCATCATCTCAGGGCTC
JMFN032G02+           ACCATGGGAACAGCCAAGTACATCCATGTCTGTCATCACAACTTCATCATCTCAGGGCTC
                      ____________________________________________________________
consensus             ACCATGGGAACAGCCAAGTACATCCATGTCTGTCATCACAACTTCATCATCTCAGGGCTC
 
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JMFN035I21+           GCGTGTATCAGCTTTGGGAAATCACACGTCAAGTGAGCTATTGCCTGTATTCCCACACCA
JMFN032G02+           GCGTGTATCAGCTTTGGGAAATCACACGTCAAGTGAGCTATTGCCTGTATTCCCACACCA
                      ____________________________________________________________
consensus             GCGTGTATCAGCTTTGGGAAATCACACGTCAAGTGAGCTATTGCCTGTATTCCCACACCA
 
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JMFN035I21+           ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
JMFN032G02+           ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
JMSF052D09+           ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
JMSF051D09+           ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
                      ____________________________________________________________
consensus             ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
 
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JMFN035I21+           ACGCCTAACTTGGTCAGTTGGTC                                     
JMFN032G02+           ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGXXXX
JMSF052D09+           ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGACTG
JMSF051D09+           ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGACTG
                      ____________________________________________________________
consensus             ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGACTG
 
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JMFN032G02+           XXXXXXXXXXXXTGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
JMSF052D09+           GTAACAGGATTATGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
JMSF051D09+           GTAACAGGATTATGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
                      ____________________________________________________________
consensus             GTAACAGGATTATGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
 
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JMFN032G02+           CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
JMSF052D09+           CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
JMSF051D09+           CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
                      ____________________________________________________________
consensus             CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
 
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JMFN032G02+           ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
JMSF052D09+           ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
JMSF051D09+           ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
                      ____________________________________________________________
consensus             ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
 
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JMFN032G02+           CTTTATCATTATTCCAGCTCT                                       
JMSF052D09+           CTTTATCATTATTCCAGCTCTATCTACACCACCGCGGCCTCCTCGCTGGTCAATCGCCAC
JMSF051D09+           CTTTATCATTATTCCAGCTCTATCTACACCACCGCGGCCTCCTCGCTGGTCAATCGCCAC
                      ____________________________________________________________
consensus             CTTTATCATTATTCCAGCTCTATCTACACCACCGCGGCCTCCTCGCTGGTCAATCGCCAC
 
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JMSF052D09+           CTCGCCACCACCAATCGAGGACCTCGCCTGTTGGTCGCCGCTGCCTCGCTCACTATCCTC
JMSF051D09+           CTCGCCACCACCAATCGAGGACCTCGCCTGTTGGTCGCCGCTGCCTCGCTCACTATCCTC
                      ____________________________________________________________
consensus             CTCGCCACCACCAATCGAGGACCTCGCCTGTTGGTCGCCGCTGCCTCGCTCACTATCCTC
 
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JMSF052D09+           GTCGCAGCCGTAGGAACTCCAAGTCTCCAGGAAGGCGGAAGCATAAAGAAATTAATTGTT
JMSF051D09+           GTCGCAGCCGTAGGAACTCCAAGTCTCCAGGAAGGCGGAAGCATAAAGAAATTAATTGTT
                      ____________________________________________________________
consensus             GTCGCAGCCGTAGGAACTCCAAGTCTCCAGGAAGGCGGAAGCATAAAGAAATTAATTGTT
 
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JMSF052D09+           TTCTAAATTGGGAATTAGGGTTAGAATGGTGTATAGAAAGGGGGTGCAAACGAACCTGAG
JMSF051D09+           TTCTAAATTGGGAATTAGGGTTAGAATGGTGTATAGAAAGGGGGTGCAAACGAACCTGAG
                      ____________________________________________________________
consensus             TTCTAAATTGGGAATTAGGGTTAGAATGGTGTATAGAAAGGGGGTGCAAACGAACCTGAG
 
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JMSF052D09+           GGTGAAGACTGAAGACGGAGCCCAGCCGGCGACAGTTGAAGACGAAGCCGAGCGAAGTGG
JMSF051D09+           GGTGAAGACTGAAGACGGAGCCCAGCCGGCGACAGTTGAAGACGAAGCCGAGCGAAGTGG
                      ____________________________________________________________
consensus             GGTGAAGACTGAAGACGGAGCCCAGCCGGCGACAGTTGAAGACGAAGCCGAGCGAAGTGG
 
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JMSF052D09+           CGAGACGCAGAGGAAGCGGTGGTTCACGACTCGCGAGATAGAGCGACAAAGTCTATTTTC
JMSF051D09+           CGAGACGCAGAGGAAGCGGTGGTTCACGACTCGCGAGATAGAGCGACAAAGTCTATTTTC
                      ____________________________________________________________
consensus             CGAGACGCAGAGGAAGCGGTGGTTCACGACTCGCGAGATAGAGCGACAAAGTCTATTTTC