Contig 001000:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015B19Sequence275001000 (10)ref|XP_009794726.1|6e-22PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve634009804 (8)ref|XP_009794726.1|1e-75PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMFF022G14Sequence522001000 (10)ref|XP_009794726.1|3e-67PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve198009804 (8)
JMFF025J14Sequence530001000 (10)ref|XP_009794726.1|3e-67PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve679009804 (8)ref|XP_009794726.1|3e-104PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMFF045H05Sequence627001000 (10)ref|XP_009794726.1|1e-83PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve494009804 (8)ref|XP_009794726.1|2e-20PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMFS004C07Sequence125001000 (10)
JMSF002P12Sequence233001000 (10)gb|AHC69823.1|5e-14polygalacturonase isoenzyme 1 beta subunit [Nicotiana tabacum]664009804 (8)ref|XP_009794726.1|3e-108PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF008D22Sequence163001000 (10)
JMSF014K19Sequence403001000 (10)gb|AHC69823.1|6e-42polygalacturonase isoenzyme 1 beta subunit [Nicotiana tabacum]774009804 (8)ref|XP_009794726.1|3e-139PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF048C13Sequence679001000 (10)ref|XP_009794726.1|1e-91PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve770009804 (8)ref|XP_009794726.1|2e-137PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF050P13Sequence668001000 (10)gb|AHC69823.1|3e-88polygalacturonase isoenzyme 1 beta subunit [Nicotiana tabacum]699009804 (8)ref|XP_009794726.1|9e-84PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve

Alignment

This contig is upended


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JMSF048C13+                                                  TCGGAATAGGAGGTGAATCGC
JMSF050P13+                                                               TGAATCGC
                      ____________________________________________________________
consensus                                                    TCGGAATAGGAGGTGAATCGC
 
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JMFF045H05+                               AGGCCCATAGTTAGAGAACTTGCCTTTGCCGCCGGTGGAG
JMSF048C13+           ATATCTGGGACATTGACTTCAGGCCCATAGTTAGAGAACTTGCCTTTGCCGCCGGTGGAG
JMSF050P13+           ATATCTGGGACATTGACTTCAGGCCCATAGTTAGAGAACTTGCCTTTGCCGCCGGTGGAG
                      ____________________________________________________________
consensus             ATATCTGGGACATTGACTTCAGGCCCATAGTTAGAGAACTTGCCTTTGCCGCCGGTGGAG
 
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JMFF045H05+           CTCGTGCCGTAGGTGTTGAAGCTCTGGTCAACCACGTTGCCGTTGGGGGCATAATTGGAA
JMSF048C13+           CTCGTGCCGTAGGTGTTGAAGCTCTGGTCAACCACGTTGCCGTTGGGGGCATAATTGGAA
JMSF050P13+           CTCGTGCCGTAGGTGTTGAAGCTCTGGTCAACCACGTTGCCGTTGGGGGCATAATTGGAA
                      ____________________________________________________________
consensus             CTCGTGCCGTAGGTGTTGAAGCTCTGGTCAACCACGTTGCCGTTGGGGGCATAATTGGAA
 
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JMFF045H05+           AACCTATCCTCGTGTCCGACCGAGTCGCGGCTGTATCGGCGGAACGAGTCGACCGGAATA
JMSF048C13+           AACCTATCCTCGTGTCCGACCGAGTCGCGGCTGTATCGGCGGAACGAGTCGACCGGAATA
JMFF025J14+                    TCGTGTCCGACCGAGTCGCGGCTGTATCGGCGGAACGAGTCGACCGGAATA
JMFF022G14+                     CGTGTCCGACCGAGTCGCGGCTGTATCGGCGGAACGAGTCGACCGGAATA
JMSF050P13+           AACCTATCNTCGTGTCCGACCGAGTCGCGGCTGTATCGGCGGAACGAGTCGACCGGAATA
                      ____________________________________________________________
consensus             AACCTATCCTCGTGTCCGACCGAGTCGCGGCTGTATCGGCGGAACGAGTCGACCGGAATA
 
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JMFF045H05+           TTCTCGTTATCCGTGTAATTCTTGAACGAATCGACCCCTCCGGCACGGTCGGTGCCGTAA
JMSF048C13+           TTCTCGTTATCCGTGTAATTCTTGAACGAATCGACCCCTCCGGCACGGTCGGTGCCGTAA
JMFF025J14+           TTCTCGTTATCCGTGTAATTCTTGAACGAATCGACCCCTCCGGCACGGTCGGTGCCGTAA
JMFF022G14+           TTCTCGTTATCCGTGTAATTCTTGAACGAATCGACCCCTCCGGCACGGTCGGTGCCGTAA
JMSF050P13+           TTCTCGTTATCCGTGTAATTCTTGAACGAATCGACCCCTCCGGCACGGTCGGTGCCGTAA
                      ____________________________________________________________
consensus             TTCTCGTTATCCGTGTAATTCTTGAACGAATCGACCCCTCCGGCACGGTCGGTGCCGTAA
 
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JMFF045H05+           TTGGTGAAATTCTTGAAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
JMSF048C13+           TTGGTGAAATTCTTGAAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
JMFF025J14+           TTGGTGAAATTCTTGAAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
JMFF022G14+           TTGGTGAAATTCTTGAAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
JMSF014K19+                          AAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
JMSF050P13+           TTGGTGAAATTCTTGAAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
                      ____________________________________________________________
consensus             TTGGTGAAATTCTTGAAAGAATAGGACGCGAAATTGACGTTCCCGGCGTGCTTCTCGAGG
 
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JMFF045H05+           CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
JMSF048C13+           CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
JMFF025J14+           CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
JMFF022G14+           CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
JMSF014K19+           CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
JMSF050P13+           CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
                      ____________________________________________________________
consensus             CTGGGGGACAAATCCGGGAAGCAGAGCAGATTCGCCGACGAGCAAAACCCGGGGAGCTGC
 
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JMFF045H05+           GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
JMSF048C13+           GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
JMFF025J14+           GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
JMFF022G14+           GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
JMSF014K19+           GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
JMFF015B19+                                 CCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
JMSF050P13+           GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
                      ____________________________________________________________
consensus             GTCGACAGCGACTCCCCCCCGTCCGCCGCCATCTTCGAATATCCGGCGTACTGGGCGGCG
 
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JMFF045H05+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMSF048C13+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMFF025J14+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMFF022G14+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMSF014K19+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMFF015B19+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMSF002P12+                  GCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
JMSF008D22+                                                                    TGC
JMSF050P13+           TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
                      ____________________________________________________________
consensus             TTCAACGGCGACGCCTTGTTTAGCAGAAACCACGGCTTCGCCAAGTCATTCGAAATCTGC
 
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JMFF045H05+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMSF048C13+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMFF025J14+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMFF022G14+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMSF014K19+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMFF015B19+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMFS004C07+                                                                  CGGAG
JMSF002P12+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
JMSF008D22+           TTCTTCCAGTAANGAATCAGGTAAGCTTTGGGCGTGAAGGGATTNGACAACTCGCCGGAA
JMSF050P13+           TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
                      ____________________________________________________________
consensus             TTCTTCCAGTAACGAATCAGGTAAGCTTTGGGCGTGAAGGGATTCGACAACTCGCCGGAA
 
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JMFF045H05+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMSF048C13+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMFF025J14+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMFF022G14+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMSF014K19+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMFF015B19+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMFS004C07+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMSF002P12+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMSF008D22+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
JMSF050P13+           TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
                      ____________________________________________________________
consensus             TCCTCCCCACCCATAATCCCAATCACATTGAAAGATGAAGCCAAGAAGAAGAGGAGGAAG
 
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JMFF045H05+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTG             
JMSF048C13+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGCT   
JMFF025J14+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGCT   
JMFF022G14+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGT        
JMSF014K19+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGC    
JMFF015B19+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGCT   
JMFS004C07+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAG                            
JMSF002P12+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGCT   
JMSF008D22+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGA                    
JMSF050P13+           AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGCTGCC
                      ____________________________________________________________
consensus             AGAGAGAGAGGATGCATTTTAGTTTACTTGAGAGTGAGGAAGCTCTGCTAGTGGGCTGCC