Contig 000996:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN019J10Sequence389000996 (5)ref|XP_006340879.1|1e-43PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum]
JMSF011K08Sequence336000996 (5)ref|XP_006340879.1|1e-39PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum]714000996 (5)ref|XP_006340879.1|1e-40PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum]
JMSF050E21Sequence691000996 (5)ref|XP_006340879.1|2e-43PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum]699000996 (5)ref|XP_006340879.1|3e-43PREDICTED: sufE-like protein, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF011K08-                                                          GTGGGTTTGCGC
                      ____________________________________________________________
consensus                                                             GTGGGTTTGCGC
 
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rJMSF011K08-          ATNTAGTGTGCATNTTGGACNTCTTGTCNNNAGNTAGCCNAATCTGAGCTTACAACTTGC
rJMSF050E21-                                            TAGCCCAATCTGAGCTTACAACTTGC
JMSF050E21+                                             TAGCCCAATCTGAGCTTACAACTTGC
                      ____________________________________________________________
consensus             ATNTAGTGTGCATNTTGGACNTCTTGTCNNNAGNTAGCCCAATCTGAGCTTACAACTTGC
 
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rJMSF011K08-          ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
rJMSF050E21-          ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
JMSF050E21+           ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
                      ____________________________________________________________
consensus             ACCAGGAACATTGCTTACTACATTTTATTCAAACAATTTTTGCCTACCAATTTAGGTCAC
 
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rJMSF011K08-          ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCNNCATAGTAAACAACTT
rJMSF050E21-          ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCAGCATAGTAAACAACTT
JMSF050E21+           ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCAGCATAGTAAACAACTT
                      ____________________________________________________________
consensus             ATATATCCATTGAGGAAAAAAAACAAAAAAACCCACATGAAGCAGCATAGTAAACAACTT
 
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rJMSF011K08-          AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
rJMSF050E21-          AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
JMSF050E21+           AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
                      ____________________________________________________________
consensus             AGAATAGATATTCCTAATAAATTCTACAAAAAGATCAATACTGTAGAACTTCAAGTTATT
 
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rJMSF011K08-          TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
rJMSF050E21-          TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
JMSF050E21+           TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
                      ____________________________________________________________
consensus             TTCTAATCCCTTCTTTTTAGGTTCTTATTAGCGTATTATTGGCGAAGGTTGTAACCTTTC
 
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rJMSF011K08-          CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCNGTTAAGGCCAGCTTCTTTG
rJMSF050E21-          CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCAGTTAAGGCCAGCTTCTTTG
JMFN019J10+                               GAATAATACCCAACAATTTCAGTTAAGGCCAGCGTCTTTG
JMSF050E21+           CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCAGTTAAGGCCAGCTTCTTTG
                      ____________________________________________________________
consensus             CCCACTATCCATCCAAAATCGAATAATACCCAACAATTTCAGTTAAGGCCAGCTTCTTTG
 
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rJMSF011K08-          GGGGTTTTAGCGACGATNGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCANA
rJMSF050E21-          GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
JMFN019J10+           GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
JMSF011K08+                   AGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
JMSF050E21+           GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
                      ____________________________________________________________
consensus             GGGGTTTTAGCGACGATAGAGAGAGCGTGGAGTCCAGATTGGAGCTCATCAGAGAGCAGA
 
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rJMSF011K08-          TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTNGCCGGAGACGATC
rJMSF050E21-          TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
JMFN019J10+           TCGTAGGCCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
JMSF011K08+           TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
JMSF050E21+           TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
                      ____________________________________________________________
consensus             TCGTAGACCATACGGTGTCGTTTCACAAGGTTCTGGCCATCGAACTTGCCGGAGACGATC
 
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rJMSF011K08-          TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
rJMSF050E21-          TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
JMFN019J10+           TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
JMSF011K08+           TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
JMSF050E21+           TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
                      ____________________________________________________________
consensus             TTCACGTTGAAGTGGGTCTCGCCATTAGAGCCGCTCTCCTTCACGGCCGCGTGGCCTGCA
 
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rJMSF011K08-          TGCTGGTAGGAGACGTCTTCCACTTCAACTANGCTCGCTTCCAGCGTAGACAATAGCCTC
rJMSF050E21-          TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
JMFN019J10+           TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
JMSF011K08+           TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
JMSF050E21+           TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
                      ____________________________________________________________
consensus             TGCTGGTAGGAGACGTCTTCCACTTCAACTAGGCTCGCTTCCAGCGTAGACAATAGCCTC
 
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rJMSF011K08-          GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCGAATTGTCTTCTA
rJMSF050E21-          GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
JMFN019J10+           GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
JMSF011K08+           GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
JMSF050E21+           GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
                      ____________________________________________________________
consensus             GTCTTGATTCGGCTCGCTCTTGATGCCACCGCTCTGGACGCCATTGCAAATTGTCTTCTA
 
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rJMSF011K08-          TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGT                   
rJMSF050E21-          TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGTACAACAAAAGGNTTGATCT
JMFN019J10+           TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTG                           
JMSF011K08+           TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGT                   
JMSF050E21+           TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGTACAACAAAAGGTTTGATCT
                      ____________________________________________________________
consensus             TGGGCTCGACTCTTCAGTTCTGCCCGCTTTGTGTTATCTGTACAACAAAAGGTTTGATCT