Contig 000993:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009H02Sequence391000993 (5)758007240 (4)ref|XP_011079495.1|1e-82PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum]
JMSF030B15Sequence712000993 (5)ref|XP_009773072.1|2e-20PREDICTED: uncharacterized protein LOC104223345 isoform X2 [Nicotiana sylvestri757007240 (4)ref|XP_011079495.1|5e-83PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum]
JMSF030C15Sequence104000993 (5)ref|XP_009773071.1|2e-06PREDICTED: uncharacterized protein LOC104223345 isoform X1 [Nicotiana sylvestri464010401 (69)ref|XP_004247215.1|8e-49PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Solanu
JMSF039H02Sequence665000993 (5)gb|ABN08058.1|7e-07RNA-directed DNA polymerase , related [Medicago truncatula]801007240 (4)ref|XP_011079495.1|5e-52PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum]
JMSF049O12Sequence666000993 (5)gb|ABN08058.1|7e-07RNA-directed DNA polymerase , related [Medicago truncatula]718007240 (4)ref|XP_011079495.1|2e-52PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum]

Alignment

This contig is upended


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JMSF030B15+                                                             CTCCATAAGC
                      ____________________________________________________________
consensus                                                               CTCCATAAGC
 
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JMSF030B15+           ATCCTCGTGCAGATACAAGTGTCCCAAGAGCAAAATAGACCATAACCAACGCAAAAGTCC
                      ____________________________________________________________
consensus             ATCCTCGTGCAGATACAAGTGTCCCAAGAGCAAAATAGACCATAACCAACGCAAAAGTCC
 
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JMSF030C15+                                          GAAAGTAGCAACNGTNTGATAAAGCAGGA
JMSF030B15+           ACTGGGTATAGAAAAAGAAGACGAAGAATCCGAAAGTAGCAACAGTCTGATAAAGCAGGA
                      ____________________________________________________________
consensus             ACTGGGTATAGAAAAAGAAGACGAAGAATCCGAAAGTAGCAACAGTCTGATAAAGCAGGA
 
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JMSF030C15+           ACGCCATGGAAGCAAAGGCGAAAGCTCTGTAAAAAAGAAGCCAGCGAGGATGGAGGCCTC
JMSF030B15+           ACGCCATGGAAGCAAAGGCGAAAGCTCTGTAAAAAAGAAGCCAGCGAGGATGGAGGCCTC
JMSF039H02+                                                                  GCCTC
JMSF049O12+                                                                  GCCTC
                      ____________________________________________________________
consensus             ACGCCATGGAAGCAAAGGCGAAAGCTCTGTAAAAAAGAAGCCAGCGAGGATGGAGGCCTC
 
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JMSF030C15+           CCCAGCGGGGAAC                                               
JMSF030B15+           CCCAGCGGGGAACCCAGAAATGAGAGGGGTCGATAGGATCTTTACGGCGGCTCCTGAGGA
JMSF039H02+           CCCAGCGGGGAACCCAGAAATGAGAGGGGTCGATAGGATCTTTACGGCGGCTCCTGAGGA
JMSF049O12+           CCCAGCGGGGAACCCAGAAATGAGAGGGGTCGATAGGATCTTTACGGCGGCTCCTGAGGA
                      ____________________________________________________________
consensus             CCCAGCGGGGAACCCAGAAATGAGAGGGGTCGATAGGATCTTTACGGCGGCTCCTGAGGA
 
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JMSF030B15+           ATCTTAGTGCGATGGTGGCGGGGAGGATGAGGATGAGAGCACAAACTACAATTTGCCATC
JMSF039H02+           ATCTTAGTGCGATGGTGGCGGGGAGGATGAGGATGAGAGCACAAACTACAATTTGCCATC
JMSF049O12+           ATCTTAGTGCGATGGTGGCGGGGAGGATGAGGATGAGAGCACAAACTACAATTTGCCATC
                      ____________________________________________________________
consensus             ATCTTAGTGCGATGGTGGCGGGGAGGATGAGGATGAGAGCACAAACTACAATTTGCCATC
 
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JMSF030B15+           GAAGCCAGTACCCTATGCCCAGAGCGGCTTCTAAGTTCTCCATCAATTCTTCGACTGATT
JMSF039H02+           GAAGCCAGTACCCTATGCCCAGAGCGGCTTCTAAGTTCTCCATCAATTCTTCGACTGATT
JMSF009H02+                                                           CTTCGACTGATT
JMSF049O12+           GAAGCCAGTACCCTATGCCCAGAGCGGCTTCTAAGTTCTCCATCAATTCTTCGACTGATT
                      ____________________________________________________________
consensus             GAAGCCAGTACCCTATGCCCAGAGCGGCTTCTAAGTTCTCCATCAATTCTTCGACTGATT
 
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JMSF030B15+           ACTGATAGGGTGTAGCTAGAAGAAGGAGATTATATAATGAATAGAAAAAGAGATAAAATC
JMSF039H02+           ACTGATAGGGTGTAGCTAGAAGAAGGAGATTATATAATGAATAGAAAAAGAGATAAAATC
JMSF009H02+           ACTGATAGGGTGTAGCTAGAAGAAGGAGATTATATAATGAATAGAAAAAGAGATAAAATC
JMSF049O12+           ACTGATAGGGTGTAGCTAGAAGAAGGAGATTATATAATGAATAGAAAAAGAGATAAAATC
                      ____________________________________________________________
consensus             ACTGATAGGGTGTAGCTAGAAGAAGGAGATTATATAATGAATAGAAAAAGAGATAAAATC
 
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JMSF030B15+           AGAAACGAAATGTGAAGCGTGGGGTGGGGTTGTTGACTTGTTGAGATTTGGCAGGGAGTG
JMSF039H02+           AGAAACGAAATGTGAAGCGTGGGGTGGGGTTGTTGACTTGTTGAGATTTGGCAGGGAGTG
JMSF009H02+           AGAAACGAAATGTGAAGCGTGGGGTGGGGTTGTTGACTTGTTGAGATTTGGCAGGGAGTG
JMSF049O12+           AGAAACGAAATGTGAAGCGTGGGGTGGGGTTGTTGACTTGTTGAGATTTGGCAGGGAGTG
                      ____________________________________________________________
consensus             AGAAACGAAATGTGAAGCGTGGGGTGGGGTTGTTGACTTGTTGAGATTTGGCAGGGAGTG
 
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JMSF030B15+           GCTGAATTATACTATTCCATAGATTCCATAGACCATAGTTGCCTTCTTTTGTTTGAATTT
JMSF039H02+           GCTGAATTATACTATTCCATAGATTCCATAGACCATAGTTGCCTTCTTTTGTTTGAATTT
JMSF009H02+           GCTGAATTATACTATTCCATAGATTCCATAGACCATAGTTGCCTTCTTTTGTTTGAATTT
JMSF049O12+           GCTGAATTATACTATTCCATAGATTCCATAGACCATAGTTGCCTTCTTTTGTTTGAATTT
                      ____________________________________________________________
consensus             GCTGAATTATACTATTCCATAGATTCCATAGACCATAGTTGCCTTCTTTTGTTTGAATTT
 
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JMSF030B15+           TGCAGAAATGTTGGAACAATAGCTTTTCT                               
JMSF039H02+           TGCAGAAATGTTGGAACAATAGCTTTTCTGAAAGATTGTTTAGATGACTGTTATTCTCAA
JMSF009H02+           TGCAGAAATGTTGGAACAATAGCTTTTCTGAAAGATTGTTTAGATGACTGTTATTCTCAA
JMSF049O12+           TGCAGAAATGTTGGAACAATAGCTTTTCTGAAAGATTGTTTAGATGACTGTTATTCTCAA
                      ____________________________________________________________
consensus             TGCAGAAATGTTGGAACAATAGCTTTTCTGAAAGATTGTTTAGATGACTGTTATTCTCAA
 
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JMSF039H02+           CTCAACAAGCTCCCGTAGGTTCAACGGTAGCATAAGAAAATTGGTAAAAAAGATGGATTC
JMSF009H02+           CTCAACAAGCTCCCGTAGGTTCAACGGTAGCATAAGAAAATTGGTAAAAAAGATGGATTC
JMSF049O12+           CTCAACAAGCTCCCGTAGGTTCAACGGTAGCATAAGAAAATTGGTAAAAAAGATGGATTC
                      ____________________________________________________________
consensus             CTCAACAAGCTCCCGTAGGTTCAACGGTAGCATAAGAAAATTGGTAAAAAAGATGGATTC
 
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JMSF039H02+           ATATGAATTTCAAGAGTAATTTGTTCCACCAAAAACATGGTAGACCAGCTCAGCCAATGA
JMSF009H02+           ATATGAATTTCAAGAGTAATTTGTTCCACCAAAAACATGGTAGACCAGCTCAGCCAATGA
JMSF049O12+           ATATGAATTTCAAGAGTAATTTGTTCCACCAAAAACATGGTAGACCAGCTCAGCCAATGA
                      ____________________________________________________________
consensus             ATATGAATTTCAAGAGTAATTTGTTCCACCAAAAACATGGTAGACCAGCTCAGCCAATGA
 
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JMSF039H02+           ATACCTCTATTATCTCCCGAATTCTTGCTCCACCAAAACCGATTCATACATTTATCAATA
JMSF009H02+           ATACCTCTATTATCTC                                            
JMSF049O12+           ATACCTCTATTATCTCCCGAATTCTTGCTCCACCAAAACCGATTCATACATTTATCAATA
                      ____________________________________________________________
consensus             ATACCTCTATTATCTCCCGAATTCTTGCTCCACCAAAACCGATTCATACATTTATCAATA
 
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JMSF039H02+           GTGTCCCACACTGTAGTAGGAAACAAAAATACGGACATGGTGAAAATGGGCAACACTTTC
JMSF049O12+           GTGTCCCACACTGTAGTAGGAAACAAAAATACGGACATGGTGAAAATGGGCAACACTTTC
                      ____________________________________________________________
consensus             GTGTCCCACACTGTAGTAGGAAACAAAAATACGGACATGGTGAAAATGGGCAACACTTTC