Contig 000991:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+                                                              CTTGGGTGG
                      ____________________________________________________________
consensus                                                                CTTGGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           GAATGGGAGAGTGGGGTTGATTGATTTCAAGAGGAGGCGGCATGGGTGGCTTGGCCGGAG
JMSF035L08+               GGGAGAGTGGGGTTGATTGATTTCAAGAGGAGGCGGCATGGGTGGCTTGGCCGGAG
                      ____________________________________________________________
consensus             GAATGGGAGAGTGGGGTTGATTGATTTCAAGAGGAGGCGGCATGGGTGGCTTGGCCGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           CCGCCGGTCTGGCCGGAAAAATGAGCGGCGCAGACATTGTAATCCGGCTGGTAAGCTGCC
JMSF035L08+           CCGCCGGTCTGGCCGGAAAAATGAGCGGCGCAGACATTGTAATCCGGCTGGTAAGCTGCC
JMSF049K06+                         GGAAAAATGAGCGGCGCAGACATTGTAATCCGGCTGGTAAGCTGCC
                      ____________________________________________________________
consensus             CCGCCGGTCTGGCCGGAAAAATGAGCGGCGCAGACATTGTAATCCGGCTGGTAAGCTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           GGAATGATCTGCCGCTGAGCGTTTTTGCAGACAGGCATTCCATTGGCACTTCACCGGATA
JMSF035L08+           GGAATGATCTGCCGCTGAGCGTTTTTGCAGACAGGCATTCCATTGGCACTTCACCGGATA
JMSF049K06+           GGAATGATCTGCCGCTGAGCGTTTTTGCAGACAGGCATTCCATTGGCACTTCACCGGATA
                      ____________________________________________________________
consensus             GGAATGATCTGCCGCTGAGCGTTTTTGCAGACAGGCATTCCATTGGCACTTCACCGGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           AGGGGTTGCATATATATTTCTCAGCTTCATCCCACTTCGAGTTCAAAGCCAATCCCTCCG
JMSF035L08+           AGGGGTTGCATATATATTTCTCAGCTTCATCCCACTTCGAGTTCAAAGCCAATCCCTCCG
JMSF049K06+           AGGGGTTGCATATATATTTCTCAGCTTCATCCCACTTCGAGTTCAAAGCCAATCCCTCCG
                      ____________________________________________________________
consensus             AGGGGTTGCATATATATTTCTCAGCTTCATCCCACTTCGAGTTCAAAGCCAATCCCTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           GCGACATATATTCCCAGCTATACACCGTCTTAGCCTGCAAAGCTTTAAGGGCAGTGGTGA
JMSF031E02+                                              TGCAAAGCTTTAAGNGCAGTGGTGA
JMSF035L08+           GCGACATATATTCCCAGCTATACACCGTCTTAGCCTGCAAAGCTTTAAGGGCAGTGGTGA
JMSF049K06+           GCGACATATATTCCCAGCTATACACCGTCTTAGCCTGCAAAGCTTTAAGGGCAGTGGTGA
                      ____________________________________________________________
consensus             GCGACATATATTCCCAGCTATACACCGTCTTAGCCTGCAAAGCTTTAAGGGCAGTGGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           AAGAATACGTTGAAGGGTCAATTTCCTCTTTCAAGTTGTATCCCGGAGACGAAGCAGTGC
JMSF031E02+           AAGAATACGTNGAAGGGTCAATNTCCTCTTTCAAGTTGTATCCCGGAGACGAAGCAGTGC
JMSF035L08+           AAGAATACGTTGAAGGGTCAATTTCCTCTTTCAAGTTGTATCCCGGAGACGAAGCAGTGC
JMSF049K06+           AAGAATACGTTGAAGGGTCAATTTCCTCTTTCAAGTTGTATCCCGGAGACGAAGCAGTGC
                      ____________________________________________________________
consensus             AAGAATACGTTGAAGGGTCAATTTCCTCTTTCAAGTTGTATCCCGGAGACGAAGCAGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           TGGAAATGGTGAGGTTTGATCTGAAAGACTTATTGGCATATTCTTCCCTGAAACTTGTGA
JMSF031E02+           TGGAAATGGTGAGGTTTGATCNGAAAGACTTATTGGCATATTCTTCCCTGAAACTTGTGA
JMSF035L08+           TGGAAATGGTGAGGTTTGATCTGAAAGACTTATTGGCATATTCTTCCCTGAAACTTGTGA
JMSF049K06+           TGGAAATGGTGAGGTTTGATCTGAAAGACTTATTGGCATATTCTTCCCTGAAACTTGTGA
                      ____________________________________________________________
consensus             TGGAAATGGTGAGGTTTGATCTGAAAGACTTATTGGCATATTCTTCCCTGAAACTTGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           TGTAAGAAGCAGAAAACCTTCTGGAATTGGTGTTTTCGCGGGTGATTTTGGCCTTGAGAC
JMSF031E02+           TGTAAGAAGCAGAAAACCTTCTGGAATTGGTGTTTTCGCGGGTGATTTTGGCCTTGAGAC
JMSF035L08+           TGTAAGAAGCAGAAAACCTTCTGGAATTGGTGTTTTCGCGGGTGATTTTGGCCTTGAGAC
JMSF049K06+           TGTAAGAAGCAGAAAACCTTCTGGAATTGGTGTTTTCGCGGGTGATTTTGGCCTTGAGAC
                      ____________________________________________________________
consensus             TGTAAGAAGCAGAAAACCTTCTGGAATTGGTGTTTTCGCGGGTGATTTTGGCCTTGAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           CCCAATCTGAGAAGTTGAACTCAGGTTGTTCTTCATCTTGTTGGTGGCGTCTGGAACCCA
JMSF031E02+           CCCAATCTGAGAAGTTGAACTCAGGTTGTTCTTCATCNNGTTGGNGGCGTCTGGAACCCA
JMSF035L08+           CCCAATCTGAGAAGTTGAACTCAGGTTGTTCTTCATCTTGTTGGTGGCGTCTGGAACCCA
JMSF049K06+           CCCAATCTGAGAAGTTGAACTCAGGTTGTTCTTCATCTTGTTGGTGGCGTCTGGAACCCA
                      ____________________________________________________________
consensus             CCCAATCTGAGAAGTTGAACTCAGGTTGTTCTTCATCTTGTTGGTGGCGTCTGGAACCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           AAGAAGGTTGTTTCATGATTCTAGTACTCATGCATGCTAAGCTACAAAAATAGAAATGGG
JMSF031E02+           AAGAAGGTTGTTTCATGATTCTAGTACTCATGCATGNTAAGCTACAAAAATNGAAATGGG
JMSF035L08+           AAGAAGGTTGTTTCATGATTCTAGTACTCATGCATGCTAAGCTACAAAAATAGAAATGGG
JMSF049K06+           AAGAAGGTTGTTTCATGATTCTAGTACTCATGCATGCTAAGCTACAAAAATAGAAATGGG
                      ____________________________________________________________
consensus             AAGAAGGTTGTTTCATGATTCTAGTACTCATGCATGCTAAGCTACAAAAATAGAAATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           AAAATGGATGATTCGATCTGATCTTAGTTTAAATCAAAACTTTTGTTTCAAACGTAAGTA
JMSF031E02+           AAAANGGATGATNCGATNTGATCTTAGTTTAAATCAAAACTTTTGTTTCAAACGTAAGTA
JMSF035L08+           AAAATGGATGATTCGATCTGATCTTAGTTTAAATCAAAACTTTTGTTTCAAACGTAAGTA
JMSF049K06+           AAAATGGATGATTCGATCTGATCTTAGTTTAAATCAAAACTTTTGTTTCAAACGTAAGTA
                      ____________________________________________________________
consensus             AAAATGGATGATTCGATCTGATCTTAGTTTAAATCAAAACTTTTGTTTCAAACGTAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033G21+           GTCTC                                                       
JMSF031E02+           GTCTC                                                       
JMSF035L08+           GTCTC                                                       
JMSF049K06+           GTCTCTCATAGACTTGTCATTTTGAATGGTTAAAAAGAAGAGTGTCCGGTTACAGTATCC
                      ____________________________________________________________
consensus             GTCTCTCATAGACTTGTCATTTTGAATGGTTAAAAAGAAGAGTGTCCGGTTACAGTATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049K06+           ACAAAAAGATGCTCTCTCTCAACTGCACCTGTGGGCTGTGCCCAAAAACTGCCAAAATTC
                      ____________________________________________________________
consensus             ACAAAAAGATGCTCTCTCTCAACTGCACCTGTGGGCTGTGCCCAAAAACTGCCAAAATTC