Contig 000978:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010A20Sequence328000978 (5)
JMFF038I15Sequence328000978 (5)279000978 (5)
JMSF048O18Sequence388000978 (5)326000978 (5)

Alignment

This contig is upended


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JMFF038I15+                                          TTTTTTTTTTCTAATCAGTTACCGATATA
JMFF010A20+                                          TTTTTTTTTTCTAATCAGTTACCGATATA
JMSF048O18+                                          TTTTTTTTTTCTAATCAGTTACCGATATA
                      ____________________________________________________________
consensus                                            TTTTTTTTTTCTAATCAGTTACCGATATA
 
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rJMSF048O18-                                           GTGTCTGTCTACCGTGTATATGCAATC
rJMFF038I15-                              CATCTCAAACTGTGTGTCTGTCTANCGTGTATATGCAATC
JMFF038I15+           CTCTAGAAAGTCATCAAAACCATCTCAAACTGTGTGTCTGTCTACCGTGTATATGCAATC
JMFF010A20+           CTCTAGAAAGTCATCAAAACCATCTCAAACTGTGTGTCTGTCTACCGTGTATATGCAATC
JMSF048O18+           CTCTAGAAAGTCATCAAAACCATCCCAAACTGTGTGTCTGTCTACCGTGTATATGCAATC
                      ____________________________________________________________
consensus             CTCTAGAAAGTCATCAAAACCATCTCAAACTGTGTGTCTGTCTACCGTGTATATGCAATC
 
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rJMSF048O18-          TAATCTGATGACGGAGATGACGAATCTAATAGTGAGATTACTTTGAAGAGGCAAGAAGAA
rJMFF038I15-          TAATCTGATGACGGAGATGACGAATCTAATAGTGAGATTACTTTGAAGAGGCAAGAAGAA
JMFF038I15+           TAATCTGATGACGGAGATGACGAATCTAATAGTGAGATTACTTTGAAGAGGCAAGAAGAA
JMFF010A20+           TAATCTGATGACGGAGATGACGAATNTAATAGTGAGATTACTTTGAAGAGGCAAGAAGAA
JMSF048O18+           TAATCTGATGACGGAGATGACGAATCTAATAGTGAGATTACTTTGAAGAGGCAAGAAGAA
                      ____________________________________________________________
consensus             TAATCTGATGACGGAGATGACGAATCTAATAGTGAGATTACTTTGAAGAGGCAAGAAGAA
 
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rJMSF048O18-          -AGAAGAAAAAAAAAGGCAGTTTTCAATAGAGATCTGAGTATTCTGAAATCCGTTGGTTG
rJMFF038I15-          GTGAAGAAAAAAAAAGGCAGTTTTCAATAGAGATCTGAGTATTCTGAAATCCGTTGGTTG
JMFF038I15+           GTGAAGAAAAAAAAAGGCAGTTTTCAATAGAGATCTGAGTATTCTGAAATCCGTTGGTTG
JMFF010A20+           GTGAAGAAAAAAAAAGGCAGTTTTCAATAGAGATCTGAGTATTCTGAAATCCGTTGGTTG
JMSF048O18+           -AGAAGAAAAAAAAAGGCAGTTTTCAATAGAGATCTGAGTATTCTGAAATCCGTTGGTTG
                      ____________________________________________________________
consensus             GTGAAGAAAAAAAAAGGCAGTTTTCAATAGAGATCTGAGTATTCTGAAATCCGTTGGTTG
 
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rJMSF048O18-          AGTCCAAGCAAATTTAGCATGAGATCCACCGGGTATGAGCTCTGTCTCTCCTCACGAATG
rJMFF038I15-          AGTCCAAGCAAATTTAGCATGAGATCCACCGGGTATGAGCTCTGTCTCTCCTCACGAATG
JMFF038I15+           AGTCCAAGCAAATTTAGCATGAGATCCACCGGGTATGAGCTCTGTCTCTCCTCACGAATG
JMFF010A20+           AGTCCAAGCAAATTTAGCATGAGATCCACCGGGTATGAGCTCTGTCTCTCCTCACGAATG
JMSF048O18+           AGTCCAAGCAAATTTAGCATGAGATCCACCGGGTATGAGCTCTGTCTCTCCTCACGAATG
                      ____________________________________________________________
consensus             AGTCCAAGCAAATTTAGCATGAGATCCACCGGGTATGAGCTCTGTCTCTCCTCACGAATG
 
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rJMSF048O18-          GGGAAATGGGAAGGGGAATAGGAATAGACCAATGACCTGGGAAAAGAAAAAACCCAGATA
rJMFF038I15-          GGGAAATGGGAAGGGGAATAGGAATAGACCAATGACCTGGGAAAAGAAAAAACCCAGAT 
JMFF038I15+           GGGAAATGGGAAGGGGAATAGGAATAGACCAATGACCTGGGAAAAGAAAAAACCCAGAT 
JMFF010A20+           GGGAAATGGGAAGGGGAATAGGAATAGACCAATGACCTGGGAAAAGAAAAAACCTAGAT 
JMSF048O18+           GGGAAATGGGAAGGGGAATAGGAATAGACCAATGACCTGGGAAAAGAAAAAACCCAGATA
                      ____________________________________________________________
consensus             GGGAAATGGGAAGGGGAATAGGAATAGACCAATGACCTGGGAAAAGAAAAAACCCAGATA
 
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rJMSF048O18-          CGATTCAGTCATACAAAGACTGATATTTCTTCTTCTCGCAAAGAATTCTATGAGGCCGTC
JMSF048O18+           CGATTCAGTCATACAAAGACTGATATTTCTTCTTCTCGCAAAGAATTCTATGAGGCCGTC
                      ____________________________________________________________
consensus             CGATTCAGTCATACAAAGACTGATATTTCTTCTTCTCGCAAAGAATTCTATGAGGCCGTC