Contig 000977:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-                                                   AGGTGACCAAGTTTTACAA
                      ____________________________________________________________
consensus                                                      AGGTGACCAAGTTTTACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          ACAACAAGGGGCGTAAAGCCCTACAAAAGCTATATGGTCCAAATGACTAAATCTACCACA
                      ____________________________________________________________
consensus             ACAACAAGGGGCGTAAAGCCCTACAAAAGCTATATGGTCCAAATGACTAAATCTACCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          AGACATGAGGCCATTCGGCCATACAAAGAGCGCAAAACTCTACAAAATGAATCAAAGCTA
                      ____________________________________________________________
consensus             AGACATGAGGCCATTCGGCCATACAAAGAGCGCAAAACTCTACAAAATGAATCAAAGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          TTTTGGCCCTTACATACTCAAGGCCATTCGGCCTAAATTCCAACCAAGCTACAAGCTACA
                      ____________________________________________________________
consensus             TTTTGGCCCTTACATACTCAAGGCCATTCGGCCTAAATTCCAACCAAGCTACAAGCTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          AGCTCAGAACCAAGCTGACCTACTGAAGTTGCACCATGTCTTTTAGAAAGTTTGCTTCTA
                      ____________________________________________________________
consensus             AGCTCAGAACCAAGCTGACCTACTGAAGTTGCACCATGTCTTTTAGAAAGTTTGCTTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          TCTGGAGCAAGAATTAAAGAAACATGTGCAAAGGAAGGCATTGGAAAACCAAGGGCCTTA
                      ____________________________________________________________
consensus             TCTGGAGCAAGAATTAAAGAAACATGTGCAAAGGAAGGCATTGGAAAACCAAGGGCCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          TATATTAAAGCTTGTCTTAGAGTGTTGGGTAAATGCTCTTATGCTCTTATCATCAAAGCA
                      ____________________________________________________________
consensus             TATATTAAAGCTTGTCTTAGAGTGTTGGGTAAATGCTCTTATGCTCTTATCATCAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          TCAGCTAAAACAATCAAGGCACACTCTGCATCACTGGTTCTTCTTCTTTCTAAGAGCTCT
                      ____________________________________________________________
consensus             TCAGCTAAAACAATCAAGGCACACTCTGCATCACTGGTTCTTCTTCTTTCTAAGAGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          GCAGATTGCTTCATGTAATTTGATAATTTTTTTAGCTGAGGATTGTTGTCTACAGCCAAT
JMSF033N07+                                         TTTAGCTGATGATTATTGTCTACAGCCAAT
JMSF031M04+                                         TTTAGCTGAGGATTATTGTCTACAGCCAAT
                      ____________________________________________________________
consensus             GCAGATTGCTTCATGTAATTTGATAATTTTTTTAGCTGAGGATTATTGTCTACAGCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P14-          GGATTGTTTAAATTATCAACATCAGAGGCACTAAGGCAGAAG                  
JMSF033N07+           GGATTGTTTAAATTATCAACATCAGAGGCACTGAGGTAGAAGGGGGGATTCACCTAGAAT
JMSF031M04+           GGATTGTTTAAATTATCAACATCAGAGGCACTGAGGTAGAAGGGGGGATTCACCTAGAAT
                      ____________________________________________________________
consensus             GGATTGTTTAAATTATCAACATCAGAGGCACTGAGGTAGAAGGGGGGATTCACCTAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           GCAATAAGAACTACCATAAGAGTCATGTCAAAGAAACAAAACTAAAGCACATCATTAAGA
JMSF031M04+           GCAATAAGAACTACCATAAGAGTCATGTCAAAGAAACAAAACTAAAGCACATCATTAAGA
                      ____________________________________________________________
consensus             GCAATAAGAACTACCATAAGAGTCATGTCAAAGAAACAAAACTAAAGCACATCATTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           CTCGTAAATGCTGCTAAAACTAAAGCACATCATAAAAATCTGCTAACTTGTTCATCTAAA
JMSF031M04+           CTCGTAAATGCTGCTAAAACTAAAGCACATCATAAAAATCTGCTAACTTGTTCATCTAAA
                      ____________________________________________________________
consensus             CTCGTAAATGCTGCTAAAACTAAAGCACATCATAAAAATCTGCTAACTTGTTCATCTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           AAAAATAACAGATTCATCTCAAAAAAATAACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
JMSF031M04+           AAAAATAACAGATTCATCTCAAAAAAATAACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
JMSF048M08+                                        ACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
                      ____________________________________________________________
consensus             AAAAATAACAGATTCATCTCAAAAAAATAACTTGGAGTTACTCAGTTTCTTCTGGCTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
JMSF031M04+           TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
JMSF048M08+           TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
                      ____________________________________________________________
consensus             TACAACATTCTTTAATTAGCTGGTTCTGTTCTTCATCTTTCCATGTCTTCTGTCTTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
JMSF031M04+           TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
JMSF048M08+           TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
                      ____________________________________________________________
consensus             TTGTGTTGCTGGACAACAGAAATTTGATCTGCGGAAGTCGAGAAGTGACCTATTTTACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
JMSF031M04+           TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
JMSF048M08+           TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
                      ____________________________________________________________
consensus             TTTTACCTCTTGTTATACAAAGATTCGCGAGAAGGTGTCTTTGTATAGTTCACTGACGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
JMSF031M04+           CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
JMSF048M08+           CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
                      ____________________________________________________________
consensus             CTACGAGTAAACGAAGAATTTGGCTTCTGATCCATGAGGGAGAGAACGAGAAGGAATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033N07+           T                                                           
JMSF031M04+           T                                                           
JMSF048M08+           TTCCGTATAGTATGTCGATGACGAGCCACGGGTAGAGAGGCGCAGACGGAGAAGACTGAG
                      ____________________________________________________________
consensus             TTCCGTATAGTATGTCGATGACGAGCCACGGGTAGAGAGGCGCAGACGGAGAAGACTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048M08+           CGATGAACGGAGCTGAGCGGCGATGGTGAGAGACAAAGATGCGAGAGCTTTTGTAGGTGA
                      ____________________________________________________________
consensus             CGATGAACGGAGCTGAGCGGCGATGGTGAGAGACAAAGATGCGAGAGCTTTTGTAGGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048M08+           GGAGTGAGAATAGATGAGCGGCGGAAATGAAATGAAATGAGGGTTAAGTCTCAAGTCTCC
                      ____________________________________________________________
consensus             GGAGTGAGAATAGATGAGCGGCGGAAATGAAATGAAATGAGGGTTAAGTCTCAAGTCTCC