Contig 000974:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099A09Sequence609000974 (6)ref|XP_009761601.1|2e-41PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana
JMFS153B01Sequence613000974 (6)ref|XP_009761601.1|2e-42PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana
JMSF016H06Sequence583000974 (6)ref|XP_009613825.1|4e-35PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana781014082 (5)ref|XP_009613825.1|3e-134PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana
JMSF030D11Sequence654000974 (6)ref|XP_009761601.1|3e-40PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana727014082 (5)ref|XP_009613825.1|7e-125PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana
JMSF042K14Sequence780000974 (6)ref|XP_009761601.1|6e-55PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana830014082 (5)ref|XP_009613825.1|1e-122PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana
JMSF048I07Sequence676000974 (6)ref|XP_009613825.1|3e-34PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana740014082 (5)ref|XP_009613825.1|3e-105PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Nicotiana

Alignment

This contig is upended


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JMSF042K14+                                                            TCCTGGCGGCA
                      ____________________________________________________________
consensus                                                              TCCTGGCGGCA
 
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JMSF042K14+           ACGATCCGAGTCAAAAGCAATGAAAGGTGTACTAGCAGTTCGGTACCGCCGCTTTGGTGT
                      ____________________________________________________________
consensus             ACGATCCGAGTCAAAAGCAATGAAAGGTGTACTAGCAGTTCGGTACCGCCGCTTTGGTGT
 
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JMFS099A09+                                                                TGATCTT
JMFS153B01+                                                                TGATCTT
JMSF042K14+           ATCAGTAGTAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTGCCCCTGTATCCTCTGATCTT
                      ____________________________________________________________
consensus             ATCAGTAGTAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTGCCCCTGTATCCTCTGATCTT
 
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JMFS099A09+           TGCAGGTGCGCTATATGGGCTATTATTCAGTTGATTACGAAGGACTGCTGCACAGGTGCC
JMFS153B01+           TGCAGGTGCGCTATATGGGCTATTATTCAGTTGATTACGAAGGACTGCTGCACAGGTGCC
JMSF042K14+           TGCAGGTGCGCTATATGGGCTATTATTCAGTTGATTACGAAGGACTGCTGCACAGGTGCC
JMSF016H06+                                                     GACTGCTGCACAGGTGCC
JMSF030D11+            GCAGGTGCGCTATATGGGCTATTATTCAGTTGATTACGAAGGACTGCTGCACAGGTGCC
JMSF048I07+                                                       CTGCTGCACAGGTGCC
                      ____________________________________________________________
consensus             TGCAGGTGCGCTATATGGGCTATTATTCAGTTGATTACGAAGGACTGCTGCACAGGTGCC
 
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JMFS099A09+           TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
JMFS153B01+           TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
JMSF042K14+           TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
JMSF016H06+           TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
JMSF030D11+           TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
JMSF048I07+           TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
                      ____________________________________________________________
consensus             TTTGGCAATGTGGCGTTTGAGATGACTAGTGCCAGCTACTTTACAGCCTTGGCTGTAAGC
 
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JMFS099A09+           AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
JMFS153B01+           AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
JMSF042K14+           AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
JMSF016H06+           AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
JMSF030D11+           AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
JMSF048I07+           AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
                      ____________________________________________________________
consensus             AAACGACTGCTTGCATTGTTTACAGCAAGCCCTTCTGCATCCATTACCGACAGCTTCAAT
 
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JMFS099A09+           AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
JMFS153B01+           AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
JMSF042K14+           AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
JMSF016H06+           AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
JMSF030D11+           AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
JMSF048I07+           AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
                      ____________________________________________________________
consensus             AGTGAAGAATTCCCAAACCATTGACTTCTTTTTCCTGCGCTTCTTAGGCTGCATTTCTGA
 
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JMFS099A09+           ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
JMFS153B01+           ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
JMSF042K14+           ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
JMSF016H06+           ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
JMSF030D11+           ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
JMSF048I07+           ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
                      ____________________________________________________________
consensus             ACCATTGAGCGGTGTTCCCAAACTGTTTTCTTGCATCTCCATTGGAACAATCTCATTGTT
 
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JMFS099A09+           AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
JMFS153B01+           AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
JMSF042K14+           AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
JMSF016H06+           AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
JMSF030D11+           AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
JMSF048I07+           AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
                      ____________________________________________________________
consensus             AAGCATCATCTCGTCAGGCAATATCTCGTGATCAGCCATCATTTCACTGTGAACTACAAG
 
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JMFS099A09+           CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
JMFS153B01+           CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
JMSF042K14+           CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
JMSF016H06+           CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
JMSF030D11+           CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
JMSF048I07+           CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
                      ____________________________________________________________
consensus             CTCATTGTTGTCAATAGGAGTTTCGGGTGTAGTTGGAGTGAACTGGGAAGCCATCTTGAA
 
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JMFS099A09+           CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
JMFS153B01+           CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
JMSF042K14+           CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
JMSF016H06+           CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
JMSF030D11+           CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
JMSF048I07+           CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
                      ____________________________________________________________
consensus             CACAAAATATCAATTCTCTTGCCGGTGCCAAATCCTTCTCGAAAAATCTGGAAAAGTGAT
 
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JMFS099A09+           TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
JMFS153B01+           TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
JMSF042K14+           TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
JMSF016H06+           TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
JMSF030D11+           TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
JMSF048I07+           TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
                      ____________________________________________________________
consensus             TTTGACAGGAACCCAGACCACCAAACGCTGTGGGTTTCTTGAATCCAAACCTCGGCCACC
 
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JMFS099A09+           GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
JMFS153B01+           GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
JMSF042K14+           GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
JMSF016H06+           GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
JMSF030D11+           GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
JMSF048I07+           GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
                      ____________________________________________________________
consensus             GATTTCCAGCCGTTCGAAACGACCCAGATCTAGGTTTCCGCCGGAGGGAGGAGGAAGAGG
 
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JMFS099A09+           GA                                                          
JMSF042K14+           GAGAGAGAGAGACAGGCAGAGTGCGAGAGGAGAGAGAGAATTGGGCTT            
JMSF016H06+           GAGAGAGAGAGACAGGCAGAGTGC                                    
JMSF030D11+           GAGAGAGAGAGACAGGCAGAGTGCGAGAGGAGAGAGAGAATTGGGCTT            
JMSF048I07+           GAGAGAGAGAGACAGGCAGAGTGCGAGAGGAGAGAGAGAATTGGGCTTGGACCCGAGAAG
                      ____________________________________________________________
consensus             GAGAGAGAGAGACAGGCAGAGTGCGAGAGGAGAGAGAGAATTGGGCTTGGACCCGAGAAG
 
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JMSF048I07+           TATAATGGACCGTAAAAGTTTAAACGGTTCGTTTGGTTAAGCTGATAAGGCAAAGTCATC
                      ____________________________________________________________
consensus             TATAATGGACCGTAAAAGTTTAAACGGTTCGTTTGGTTAAGCTGATAAGGCAAAGTCATC