Contig 000968:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002P03Sequence296000968 (6)gb|KCW54638.1|2e-19hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis]692003421 (8)ref|XP_009776303.1|4e-81PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve
JMSF006L12Sequence365000968 (6)gb|ACJ85724.1|2e-35unknown [Medicago truncatula]
JMSF041O24Sequence800000968 (6)gb|KCW54638.1|9e-145hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis]747003421 (8)ref|XP_009776303.1|2e-103PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve
JMSF042O11Sequence718000968 (6)gb|KCW54638.1|1e-128hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis]495003421 (8)ref|XP_009776303.1|1e-25PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve
JMSF045P02Sequence746000968 (6)gb|KCW54638.1|1e-125hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis]698003421 (8)ref|XP_009597687.1|2e-55PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X2 [Nicotiana
JMSF047O08Sequence668000968 (6)gb|KCW54638.1|3e-101hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis]766003421 (8)ref|XP_009776303.1|5e-101PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve

Alignment

This contig is upended


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JMSF041O24+            TGATGCGGTCATAATCATAGAGACGCGCATAAGCACTAGCTCCAGCAACAATTAGCTTT
                      ____________________________________________________________
consensus              TGATGCGGTCATAATCATAGAGACGCGCATAAGCACTAGCTCCAGCAACAATTAGCTTT
 
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JMSF042O11+                              TTTTCTCAAGCTGGTCATAGTCGATATAGCCAGTGCTCTCA
JMSF041O24+           GGCCTAAAAAGCGTCGCACTTTTCTCAAGCTGGTCATAGTCGATATAGCCAGTGCTCTCA
JMSF045P02+                              TTTTCTCAAGCTGGTCATAGTCGATATAGCCAGTGCTCTCA
                      ____________________________________________________________
consensus             GGCCTAAAAAGCGTCGCACTTTTCTCAAGCTGGTCATAGTCGATATAGCCAGTGCTCTCA
 
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JMSF042O11+           TTCAATCTATAGGGCATTGTCTCAAAAAAGATGGAAACTGCTGATATCTTCTTTGTGTCA
JMSF041O24+           TTCAATCTATAGGGCATTGTCTCAAAAAAGATGGAAACTGCTGATATCTTCTTTGTGTCA
JMSF045P02+           TTCAATCTATAGGGCATTGTCTCAAAAAAGATGGAAACTGCTGATATCTTCTTTGTGTCA
JMSF047O08+                                                               TTGTGTCA
                      ____________________________________________________________
consensus             TTCAATCTATAGGGCATTGTCTCAAAAAAGATGGAAACTGCTGATATCTTCTTTGTGTCA
 
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JMSF042O11+           GTCTGATATCCATGGGAGAGATGCCCACCATGAGGAAGATCAAGTGCCATGATTCTGTCA
JMSF041O24+           GTCTGATATCCATGGGAGAGATGCCCACCATGAGGAAGATCAAGTGCCATGATTCTGTCA
JMSF045P02+           GTCTGATATCCATGGGAGAGATGCCCACCATGAGGAAGATCAAGTGCCATGATTCTGTCA
JMSF047O08+           GTCTGATATCCATGGGAGAGATGCCCACCATGAGGAAGATCAAGTGCCATGATTCTGTCA
                      ____________________________________________________________
consensus             GTCTGATATCCATGGGAGAGATGCCCACCATGAGGAAGATCAAGTGCCATGATTCTGTCA
 
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JMSF042O11+           TGAGGTTTTAATAATGCAGTGTAAACCTGAAAATTGGATGGTGATCCCGATAAAGGCTGC
JMSF041O24+           TGAGGTTTTAATAATGCAGTGTAAACCTGAAAATTGGATGGTGATCCCGATAAAGGCTGC
JMSF045P02+           TGAGGTTTTAATAATGCAGTGTAAACCTGAAAATTGGATGGTGATCCCGATAAAGGCTGC
JMSF047O08+           TGAGGTTTTAATAATGCAGTGTAAACCTGAAAATTGGATGGTGATCCCGATAAAGGCTGC
                      ____________________________________________________________
consensus             TGAGGTTTTAATAATGCAGTGTAAACCTGAAAATTGGATGGTGATCCCGATAAAGGCTGC
 
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JMSF042O11+           ACATTCACTCCCCATTTTGCAGGGTCAAGGCGGAACGCTTCCAAAGCGCGTTTTTGGCAC
JMSF041O24+           ACATTCACTCCCCATTTTGCAGGGTCAAGGCGGAACGCTTCCAAAGCGCGTTTTTGGCAC
JMSF045P02+           ACATTCACTCCCCATTTTGCAGGGTCAAGGCGGAACGCTTCCAAAGCGCGTTTTTGGCAC
JMSF047O08+           ACATTCACTCCCCATTTTGCAGGGTCAAGGCGGAACGCTTCCAAAGCGCGTTTTTGGCAC
                      ____________________________________________________________
consensus             ACATTCACTCCCCATTTTGCAGGGTCAAGGCGGAACGCTTCCAAAGCGCGTTTTTGGCAC
 
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JMSF042O11+           AAGGATTCTGCCATATCAATGTACTCATTTCCTCCATAGTATCTGGCACCAGGATATCCT
JMSF041O24+           AAGGATTCTGCCATATCAATGTACTCATTTCCTCCATAGTATCTGGCACCAGGATATCCT
JMSF045P02+           AAGGATTCTGCCATATCAATGTACTCATTTCCTCCATAGTATCTGGCACCAGGATATCCT
JMSF047O08+           AAGGATTCTGCCATATCAATGTACTCATTTCCTCCATAGTATCTGGCACCAGGATATCCT
                      ____________________________________________________________
consensus             AAGGATTCTGCCATATCAATGTACTCATTTCCTCCATAGTATCTGGCACCAGGATATCCT
 
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JMSF042O11+           TCACTGTATTTATTTGTCATAACAGAGCCAACTGCTTGCATCACAGATAAAGAAGTGAAA
JMSF041O24+           TCACTGTATTTATTTGTCATAACAGAGCCAACTGCTTGCATCACAGATAAAGAAGTGAAA
JMSF045P02+           TCACTGTATTTATTTGTCATAACAGAGCCAACTGCTTGCATCACAGATAAAGAAGTGAAA
JMSF006L12+                GTATTTATTNGTCATAACAGAGCCAACTGCTTGCATCACAGATAAAGAAGTGAAA
JMSF047O08+           TCACTGTATTTATTTGTCATAACAGAGCCAACTGCTTGCATCACAGATAAAGAAGTGAAA
                      ____________________________________________________________
consensus             TCACTGTATTTATTTGTCATAACAGAGCCAACTGCTTGCATCACAGATAAAGAAGTGAAA
 
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JMSF042O11+           TTTTCTGAGGGGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
JMSF041O24+           TTTTCTGAGGGGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
JMSF045P02+           TTTTCTGAGGGGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
JMSF006L12+           TTTTCTGAGGGGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
JMSF002P03+                     GGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
JMSF047O08+           TTTTCTGAGGGGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
                      ____________________________________________________________
consensus             TTTTCTGAGGGGATGAGTTCAAGCCCCTTCCATTGTCTAGCTTTCTCGAGCTCAATAATG
 
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JMSF042O11+           TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
JMSF041O24+           TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
JMSF045P02+           TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
JMSF006L12+           TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
JMSF002P03+           TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
JMSF047O08+           TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
                      ____________________________________________________________
consensus             TCAGCAATCTCAGGATCAACCTCCTCTAATGAAGCATTCAGCTGCTTTGGCCAAGAGACT
 
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JMSF042O11+           TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
JMSF041O24+           TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
JMSF045P02+           TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
JMSF006L12+           TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
JMSF002P03+           TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
JMSF047O08+           TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
                      ____________________________________________________________
consensus             TGACACTTTTCCTTCTCATAAACTGCTTCGCTGGATAAAGAAGACATGTAATAGAGAGAA
 
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JMSF042O11+           CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
JMSF041O24+           CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
JMSF045P02+           CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
JMSF006L12+           CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
JMSF002P03+           CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
JMSF047O08+           CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
                      ____________________________________________________________
consensus             CCGCCGCCATTGTAGAGAGTCTTGATGGGTTTTTCAATGGAAGATGAGAGCCTCCGAAGC
 
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JMSF042O11+           GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
JMSF041O24+           GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
JMSF045P02+           GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
JMSF006L12+           GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
JMSF002P03+           GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
JMSF047O08+           GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
                      ____________________________________________________________
consensus             GCCATGGCCATAGCCATCGCCATTAACAATATGGGTACACTACAGAAGCTAAGCTAGCAG
 
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JMSF042O11+           AGAGT                                                       
JMSF041O24+           AGAGTGAATCTGTTTGGTGT                                        
JMSF045P02+           AGAGTGAATCTGTTTGGTGTAATTAGTGAGTGGG                          
JMSF006L12+           AGAG                                                        
JMSF002P03+           AGAGT                                                       
JMSF047O08+           AGAGTGAATCTGTTTGGTGTAATTAGTGAGTGGGTGTGTATGGGTAAGGAGGAATGGGTC
                      ____________________________________________________________
consensus             AGAGTGAATCTGTTTGGTGTAATTAGTGAGTGGGTGTGTATGGGTAAGGAGGAATGGGTC