| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005E06 | Sequence | 456 | 000954 (3) | ref|XP_006362049.1| | 117 | PREDICTED: ATP-dependent RNA helicase DBP2-like [Solanum tuberosum] | 541 | 012642 (3) | emb|CDP19193.1| | 6e-15 | unnamed protein product [Coffea canephora] |
| JMSF026N10 | Sequence | 667 | 000954 (3) | ref|XP_011089533.1| | 4e-73 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] | 765 | 012642 (3) | ref|XP_011089533.1| | 4e-59 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] |
| JMSF045L16 | Sequence | 780 | 000954 (3) | ref|XP_011089533.1| | 3e-95 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] | 702 | 012642 (3) | ref|XP_011089533.1| | 1e-35 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF045L16+ AGGAATCAAGAGATCTACTGAAAGCTTTAACCTCTGTTTCTATTTGTTGTGCAAGCTCTC
____________________________________________________________
consensus AGGAATCAAGAGATCTACTGAAAGCTTTAACCTCTGTTTCTATTTGTTGTGCAAGCTCTC
. : . : . : . : . : . :
JMSF026N10+ GTCGTAGAGGAGGCTGAGCTA
JMSF045L16+ TTGTAGGTGCCAATACCAATGCCAATGGTCCATCACCACGTCGTAGAGGAGGCTGAGCTA
____________________________________________________________
consensus TTGTAGGTGCCAATACCAATGCCAATGGTCCATCACCACGTCGTAGAGGAGGCTGAGCTA
. : . : . : . : . : . :
JMSF026N10+ GGCAGTGCTGAATCATTGGTATAGTGAATGCAGCAGTTTTTCCACTCCCAGTTTCTGCAC
JMSF045L16+ GGCAGTGCTGAATCATTGGTATAGTGAATGCAGCAGTTTTTCCACTCCCAGTTTCTGCAC
____________________________________________________________
consensus GGCAGTGCTGAATCATTGGTATAGTGAATGCAGCAGTTTTTCCACTCCCAGTTTCTGCAC
. : . : . : . : . : . :
JMSF026N10+ AACCCAAAAGGTCCCTCCCACTAAGGGCAACTGGCATGGCTTGAGCTTGAACAGAGGTAG
JMSF045L16+ AACCCAAAAGGTCCCTCCCACTAAGGGCAACTGGCATGGCTTGAGCTTGAACAGAGGTAG
____________________________________________________________
consensus AACCCAAAAGGTCCCTCCCACTAAGGGCAACTGGCATGGCTTGAGCTTGAACAGAGGTAG
. : . : . : . : . : . :
JMSF026N10+ GGATAGTATAATCATGCAGTGCAATATCCTTCATGATGCTCGGGTGCAAGCACATATCAG
JMSF045L16+ GGATAGTATAATCATGCAGTGCAATATCCTTCATGATGCTCGGGTGCAAGCACATATCAG
____________________________________________________________
consensus GGATAGTATAATCATGCAGTGCAATATCCTTCATGATGCTCGGGTGCAAGCACATATCAG
. : . : . : . : . : . :
JMSF026N10+ TGAACGATTCTACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
JMSF005E06+ TACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
JMSF045L16+ TGAACGATTCTACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
____________________________________________________________
consensus TGAACGATTCTACAGGTGCAGGCGCAGGATTTGAATCCATAGCAACTGCAACATCAACAT
. : . : . : . : . : . :
JMSF026N10+ TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
JMSF005E06+ TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
JMSF045L16+ TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
____________________________________________________________
consensus TAAGTCTCAAGCGAATCTCTTCTATCTGTTCAAGTTTAAACAGGAGAACACGTTCGGACG
. : . : . : . : . : . :
JMSF026N10+ GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
JMSF005E06+ GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
JMSF045L16+ GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
____________________________________________________________
consensus GTTTCCACTGAGGAAAGACGGGGTCAGGCGCGACTAGACCTCTCGGTGACAAGTAATTAA
. : . : . : . : . : . :
JMSF026N10+ CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
JMSF005E06+ CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
JMSF045L16+ CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
____________________________________________________________
consensus CGGTAGCGCATGAGTTCCGGCCGGCATCATTCGAGCAGTATTCACCATTACTGATAAAAC
. : . : . : . : . : . :
JMSF026N10+ CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
JMSF005E06+ CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
JMSF045L16+ CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
____________________________________________________________
consensus CGTTCTTCGATTGAGTAAATGACGGCAATTGGCGAGAGTTGAGCTCCGAGTGCAAGTGAT
. : . : . : . : . : . :
JMSF026N10+ CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
JMSF005E06+ CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
JMSF045L16+ CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
____________________________________________________________
consensus CGCCGCCGTTGCTCACCACAGTGGTGGCGGTGGTGGAGTTTCTCAGGTGAGGAGGTACAT
. : . : . : . : . : . :
JMSF026N10+ AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
JMSF005E06+ AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
JMSF045L16+ AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
____________________________________________________________
consensus AAGACATTGCTCGATTTTCTTCTCGCTGGATAAGATGAGGGAGATGGTCACTGAAAAGAG
. : . : . : . : . : . :
JMSF026N10+ AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGA
JMSF005E06+ AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGA
JMSF045L16+ AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGATACGGCGATACTAGTC
____________________________________________________________
consensus AAATTCTAGAGAGAGAAATGAGTGAGCTCTGAGATATAAACCGATACGGCGATACTAGTC