Contig 000951:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029P11Sequence526000951 (5)ref|XP_006357482.1|4e-59PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]676002976 (5)ref|XP_009628597.1|5e-49PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF007I13Sequence413000951 (5)ref|XP_006357482.1|1e-34PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]725002976 (5)ref|XP_009628597.1|1e-73PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF016K22Sequence238000951 (5)ref|XP_006357482.1|2e-28PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]748002976 (5)ref|XP_004243351.1|2e-50PREDICTED: bromodomain-containing protein 4-like [Solanum lycopersicum]
JMSF034G04Sequence692000951 (5)ref|XP_006357482.1|1e-72PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]739002976 (5)ref|XP_009782976.1|1e-53PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve
JMSF045B07Sequence673000951 (5)ref|XP_006357482.1|6e-92PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]647002976 (5)ref|XP_009628597.1|1e-46PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF034G04+                                                        AGAAAAAGAAAATTA
                      ____________________________________________________________
consensus                                                          AGAAAAAGAAAATTA
 
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JMSF034G04+           TCATTATCTTACACTTTTACAGTTTAAAAAGGGCTGTGATATTTTCAAACTTCAACTCCA
                      ____________________________________________________________
consensus             TCATTATCTTACACTTTTACAGTTTAAAAAGGGCTGTGATATTTTCAAACTTCAACTCCA
 
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JMSF034G04+           TCGAAAAGCATGCCAACAAATATAGAGCATTATGAAGTATATTTCAAAATCTGCTTCAGA
                      ____________________________________________________________
consensus             TCGAAAAGCATGCCAACAAATATAGAGCATTATGAAGTATATTTCAAAATCTGCTTCAGA
 
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JMSF034G04+           GAGGAATAGATGAGATACAGCAGTTATATCACAGAAGAGTAAGATAACTTGTGCTATGAT
                      ____________________________________________________________
consensus             GAGGAATAGATGAGATACAGCAGTTATATCACAGAAGAGTAAGATAACTTGTGCTATGAT
 
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JMSF034G04+           AAATATAGATATGTACCTCTTGGAGATTCTTCTCAAGAGACTTGAGCTTGGTATCTGCCT
JMSF045B07+                         ACCTCTTGGAGATTCTTCTCAAGAGACTTGAGCTTGGTATCTGCCT
                      ____________________________________________________________
consensus             AAATATAGATATGTACCTCTTGGAGATTCTTCTCAAGAGACTTGAGCTTGGTATCTGCCT
 
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JMSF034G04+           CTCCATGATCCCGTACCAAATCAGAATGCATTTCTCCTATGGATTTATCAAGATTGTAAC
JMFF029P11+                                          TTCTCCTATGGATTTATCAAGATTGTAAC
JMSF045B07+           CTCCATGATCCCGTACCAAATCAGAATGCATTTCTCCTATGGATTTATCAAGATTGTAAC
                      ____________________________________________________________
consensus             CTCCATGATCCCGTACCAAATCAGAATGCATTTCTCCTATGGATTTATCAAGATTGTAAC
 
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JMSF034G04+           AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
JMFF029P11+           AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
JMSF007I13+                                                  CAAGGAAACGCATCAGATTGT
JMSF045B07+           AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
                      ____________________________________________________________
consensus             AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
 
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JMSF034G04+           CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
JMFF029P11+           CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
JMSF007I13+           CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
JMSF045B07+           CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
                      ____________________________________________________________
consensus             CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
 
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JMSF034G04+           CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMSF016K22+                              AGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMFF029P11+           CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMSF007I13+           CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMSF045B07+           CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
                      ____________________________________________________________
consensus             CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
 
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JMSF034G04+           GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMSF016K22+           GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMFF029P11+           GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMSF007I13+           GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMSF045B07+           GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
                      ____________________________________________________________
consensus             GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
 
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JMSF034G04+           CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMSF016K22+           CCTGATTGGCAAAGCCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMFF029P11+           CCTGATTGGCAAAGCCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMSF007I13+           CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMSF045B07+           CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
                      ____________________________________________________________
consensus             CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
 
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JMSF034G04+           TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMSF016K22+           TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMFF029P11+           TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMSF007I13+           TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMSF045B07+           TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
                      ____________________________________________________________
consensus             TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
 
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JMSF034G04+           GCAATTAGGGGTTTA                                             
JMSF016K22+           GCAATTAGGGGTTTA                                             
JMFF029P11+           GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATACAAAAAGTGGAGAG
JMSF007I13+           GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATATAAAAAGTGGAGAG
JMSF045B07+           GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATATAAAAAGTGGAGAG
                      ____________________________________________________________
consensus             GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATATAAAAAGTGGAGAG
 
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JMFF029P11+           AGAGAGCGATCGTACGGACTATTTTTGCTTTAGCTAAACTTCTTCGCATACC        
JMSF007I13+           AGAGAGCGATCGTACGGACTATTTTTGCTTT                             
JMSF045B07+           AGAGAGCGATCGTACGGACTATTTTTGCTTTAGCTAAACTTCTTCGCATACCAATTGCCC
                      ____________________________________________________________
consensus             AGAGAGCGATCGTACGGACTATTTTTGCTTTAGCTAAACTTCTTCGCATACCAATTGCCC