Contig 000951:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029P11Sequence526000951 (5)ref|XP_006357482.1|4e-59PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]676002976 (5)ref|XP_009628597.1|5e-49PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF007I13Sequence413000951 (5)ref|XP_006357482.1|1e-34PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]725002976 (5)ref|XP_009628597.1|1e-73PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF016K22Sequence238000951 (5)ref|XP_006357482.1|2e-28PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]748002976 (5)ref|XP_004243351.1|2e-50PREDICTED: bromodomain-containing protein 4-like [Solanum lycopersicum]
JMSF034G04Sequence692000951 (5)ref|XP_006357482.1|1e-72PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]739002976 (5)ref|XP_009782976.1|1e-53PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve
JMSF045B07Sequence673000951 (5)ref|XP_006357482.1|6e-92PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]647002976 (5)ref|XP_009628597.1|1e-46PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF034G04+ AGAAAAAGAAAATTA
                      ____________________________________________________________
consensus AGAAAAAGAAAATTA
 
. : . : . : . : . : . :
JMSF034G04+ TCATTATCTTACACTTTTACAGTTTAAAAAGGGCTGTGATATTTTCAAACTTCAACTCCA
                      ____________________________________________________________
consensus TCATTATCTTACACTTTTACAGTTTAAAAAGGGCTGTGATATTTTCAAACTTCAACTCCA
 
. : . : . : . : . : . :
JMSF034G04+ TCGAAAAGCATGCCAACAAATATAGAGCATTATGAAGTATATTTCAAAATCTGCTTCAGA
                      ____________________________________________________________
consensus TCGAAAAGCATGCCAACAAATATAGAGCATTATGAAGTATATTTCAAAATCTGCTTCAGA
 
. : . : . : . : . : . :
JMSF034G04+ GAGGAATAGATGAGATACAGCAGTTATATCACAGAAGAGTAAGATAACTTGTGCTATGAT
                      ____________________________________________________________
consensus GAGGAATAGATGAGATACAGCAGTTATATCACAGAAGAGTAAGATAACTTGTGCTATGAT
 
. : . : . : . : . : . :
JMSF034G04+ AAATATAGATATGTACCTCTTGGAGATTCTTCTCAAGAGACTTGAGCTTGGTATCTGCCT
JMSF045B07+ ACCTCTTGGAGATTCTTCTCAAGAGACTTGAGCTTGGTATCTGCCT
                      ____________________________________________________________
consensus AAATATAGATATGTACCTCTTGGAGATTCTTCTCAAGAGACTTGAGCTTGGTATCTGCCT
 
. : . : . : . : . : . :
JMSF034G04+ CTCCATGATCCCGTACCAAATCAGAATGCATTTCTCCTATGGATTTATCAAGATTGTAAC
JMFF029P11+ TTCTCCTATGGATTTATCAAGATTGTAAC
JMSF045B07+ CTCCATGATCCCGTACCAAATCAGAATGCATTTCTCCTATGGATTTATCAAGATTGTAAC
                      ____________________________________________________________
consensus CTCCATGATCCCGTACCAAATCAGAATGCATTTCTCCTATGGATTTATCAAGATTGTAAC
 
. : . : . : . : . : . :
JMSF034G04+ AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
JMFF029P11+ AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
JMSF007I13+ CAAGGAAACGCATCAGATTGT
JMSF045B07+ AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
                      ____________________________________________________________
consensus AATATAATTCCAGCTGAGACAGCCGTGAACTTATTCCCTCAAGGAAACGCATCAGATTGT
 
. : . : . : . : . : . :
JMSF034G04+ CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
JMFF029P11+ CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
JMSF007I13+ CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
JMSF045B07+ CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
                      ____________________________________________________________
consensus CAGCATATTTCTTCACAGTCTTCTCAACAATAGCACCAACATCTTGATGAACTGAAGATT
 
. : . : . : . : . : . :
JMSF034G04+ CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMSF016K22+ AGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMFF029P11+ CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMSF007I13+ CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
JMSF045B07+ CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
                      ____________________________________________________________
consensus CCTCAGGCGGACTATAAGCAGGAGCAGGAAACATAGCTGTTCTTGTCATTCTGTTTTTGT
 
. : . : . : . : . : . :
JMSF034G04+ GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMSF016K22+ GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMFF029P11+ GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMSF007I13+ GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
JMSF045B07+ GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
                      ____________________________________________________________
consensus GAAATTCCTTTGCGGAGTTGGAAGCAGTCACTGGATCAGAGTGATTTCCATTAGTGTTGT
 
. : . : . : . : . : . :
JMSF034G04+ CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMSF016K22+ CCTGATTGGCAAAGCCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMFF029P11+ CCTGATTGGCAAAGCCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMSF007I13+ CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
JMSF045B07+ CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
                      ____________________________________________________________
consensus CCTGATTGGCAAAGTCATCGTAGGAGCAAAGAATATCATCTGACGCGAAATCAAAGGCTT
 
. : . : . : . : . : . :
JMSF034G04+ TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMSF016K22+ TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMFF029P11+ TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMSF007I13+ TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
JMSF045B07+ TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
                      ____________________________________________________________
consensus TAGAACCCGGATTGTTGGCCCGACTCGATGATCCGGAAGCCATGACACACAAATCGAGAA
 
. : . : . : . : . : . :
JMSF034G04+ GCAATTAGGGGTTTA
JMSF016K22+ GCAATTAGGGGTTTA
JMFF029P11+ GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATACAAAAAGTGGAGAG
JMSF007I13+ GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATATAAAAAGTGGAGAG
JMSF045B07+ GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATATAAAAAGTGGAGAG
                      ____________________________________________________________
consensus GCAATTAGGGGTTTATGGAGATTGCAATTGCGAGTACTTCCAGATATAAAAAGTGGAGAG
 
. : . : . : . : . : . :
JMFF029P11+ AGAGAGCGATCGTACGGACTATTTTTGCTTTAGCTAAACTTCTTCGCATACC
JMSF007I13+ AGAGAGCGATCGTACGGACTATTTTTGCTTT
JMSF045B07+ AGAGAGCGATCGTACGGACTATTTTTGCTTTAGCTAAACTTCTTCGCATACCAATTGCCC
                      ____________________________________________________________
consensus AGAGAGCGATCGTACGGACTATTTTTGCTTTAGCTAAACTTCTTCGCATACCAATTGCCC