Contig 000950:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN001G11Sequence575000950 (5)ref|XP_011092243.1|2e-49PREDICTED: PHD finger protein Alfin1-like [Sesamum indicum]
JMSF017M21Sequence437000950 (5)gb|KJB66551.1|3e-27hypothetical protein B456_010G143400 [Gossypium raimondii]777000950 (5)ref|NP_001274878.1|8e-101putative alfin-like transcription factor [Solanum tuberosum] gb|AAY27262.1| puta
JMSF044P10Sequence690000950 (5)ref|XP_011092243.1|2e-75PREDICTED: PHD finger protein Alfin1-like [Sesamum indicum]644000950 (5)ref|NP_001274878.1|4e-75putative alfin-like transcription factor [Solanum tuberosum] gb|AAY27262.1| puta

Alignment

This contig is upended


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rJMSF044P10-                       AAAAGGATTATTCAACTTAACTTAGTCTAGACAAAGTGAAAAGCAAA
rJMSF017M21-                                                                    AA
                      ____________________________________________________________
consensus                          AAAAGGATTATTCAACTTAACTTAGTCTAGACAAAGTGAAAAGCAAA
 
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rJMSF044P10-          CGCAACTAAAGTTGACAACCAATCAGCACATACATTTTAACTTAGCTTCACTTGTTTTTA
rJMSF017M21-          CGCAACTAAAGTTGACAACCAATCAGCACATACATTTTAACTTAGCTTCACTTGTTTTTA
                      ____________________________________________________________
consensus             CGCAACTAAAGTTGACAACCAATCAGCACATACATTTTAACTTAGCTTCACTTGTTTTTA
 
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rJMSF044P10-          CTTTGTCAAGTTATGCTGAAAGTTCTACAGCTTCAACTCTCCATTTCCAGACTTTAAGCT
rJMSF017M21-          CTTTGTCAAGTTATGCTGAAAGTTCTACAGCTTCAACTCTCCATTTCCAGACTTTAAGCT
                      ____________________________________________________________
consensus             CTTTGTCAAGTTATGCTGAAAGTTCTACAGCTTCAACTCTCCATTTCCAGACTTTAAGCT
 
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rJMSF044P10-          CTAGCTCTCTTGTTGCTGCAACTAGGGCACTTGTACTGCTTGATATGCTCCGCTTTTGCG
rJMSF017M21-          CTAGCTCTCTTGTTGCTGCAACTAGGGCACTTGTACTGCTTGATATGCTCCGCTTTTGCG
                      ____________________________________________________________
consensus             CTAGCTCTCTTGTTGCTGCAACTAGGGCACTTGTACTGCTTGATATGCTCCGCTTTTGCG
 
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rJMSF044P10-          GGCGTAATCTTCACGCATTTACCATGGAACCATCTCTCGCACACATCGCAGCAAATCCAG
rJMSF017M21-          GGCGTAATCTTCACGCATTTACCATGGAACCATCTCTCGCACACATCGCAGCAAATCCAG
                      ____________________________________________________________
consensus             GGCGTAATCTTCACGCATTTACCATGGAACCATCTCTCGCACACATCGCAGCAAATCCAG
 
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rJMSF044P10-          AATTCATCGTTCGCGTAATTGTCACCGCAAGCTCCGCACAGTGTTGCCCCTTGTTCCTCT
rJMSF017M21-          AATTCATCGTTCGCGTAATTGTCACCGCAAGCTCCGCACAGTGTTGCCCCTTGTTCCTCT
                      ____________________________________________________________
consensus             AATTCATCGTTCGCGTAATTGTCACCGCAAGCTCCGCACAGTGTTGCCCCTTGTTCCTCT
 
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rJMSF044P10-          TCTTCTTCTTCCTCTTCCCCGCTCTCCCCGTCCTCCTCTTTTGGCTGAGACAACTTTGCT
rJMSF017M21-          TCTTCTTCTTCCTCTTCCCCGCTCTCCCCGTCCTCCTCTTTTGGCTGAGACAACTTTGCT
                      ____________________________________________________________
consensus             TCTTCTTCTTCCTCTTCCCCGCTCTCCCCGTCCTCCTCTTTTGGCTGAGACAACTTTGCT
 
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rJMSF044P10-          TCCTTGTGGTGGGTCTCCGGCTGCCGGGACTTTCCGCTTGATTTACTTTTCCGGTTGCTA
rJMSF017M21-          TCCTTGTGGTGGGTCTCCGGCTGCCGGGACTTTCCGCTTGATTTACTTTTCCGGTTGCTA
                      ____________________________________________________________
consensus             TCCTTGTGGTGGGTCTCCGGCTGCCGGGACTTTCCGCTTGATTTACTTTTCCGGTTGCTA
 
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rJMSF044P10-          TTGTTATCAGCATCCCTAACCTGCTTTGCTGCTCCTGTTACAACTTCAAATACTGTTGGT
rJMSF017M21-          TTGTTATCAGCATCCCTAACCTGCTTTGCTGCTCCTGTTACAACTTCAAATACTGTTGGT
JMSF044P10+                                         GCTCCTGTTACAACTTCAAATACTGTTGGT
                      ____________________________________________________________
consensus             TTGTTATCAGCATCCCTAACCTGCTTTGCTGCTCCTGTTACAACTTCAAATACTGTTGGT
 
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rJMSF044P10-          AGCTCGTTTATCATTTGGAAAAGCCTCTTCCTTTCACTCTTGCCAAACCCGAAGCGTGCA
rJMSF017M21-          AGCTCGTTTATCATTTGGAAAAGCCTCTTCCTTTCACTCTTGCCAAACCCGAAGCGTGCA
JMFN001G11+                                                   TGCCAAACCCGAAGCGTGCA
JMSF044P10+           AGCTCGTTTATCATTTGGAAAAGCCTCTTCCTTTCACTCTTGCCAAACCCGAAGCGTGCA
                      ____________________________________________________________
consensus             AGCTCGTTTATCATTTGGAAAAGCCTCTTCCTTTCACTCTTGCCAAACCCGAAGCGTGCA
 
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rJMSF044P10-          CCAAAGTAGAATGCAACAGAAAGCAACCAAGAATCACTGTGAACAGCTACAAGTGAG   
rJMSF017M21-          CCAAAGTAGAATGCAACAGAAAGCAACCAAGAATCACTGTGAACAGCTACAAGTGAGAGC
JMFN001G11+           CCAAAGTAGAATGCAACAGAAAGCAACCAAGAATCACTGTGAACAGCTACAAGTGAGAGC
JMSF044P10+           CCAAAGTAGAATGCAACAGAAAGCAACCAAGAATCACTGTGAACAGCTACAAGTGAGAGC
                      ____________________________________________________________
consensus             CCAAAGTAGAATGCAACAGAAAGCAACCAAGAATCACTGTGAACAGCTACAAGTGAGAGC
 
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rJMSF017M21-          CAATCCTTGTCTTGCATTCCATCCCTAGCAAAGTTTATGCCCAATGCTGGCTCAGGAAGT
JMFN001G11+           CAATCCTTGTCTTGCATTCCATCCCTAGCAAAGTTTATGCCCAATGCTGGCTCAGGAAGT
JMSF044P10+           CAATCCTTGTCTTGCATTCCATCCCTAGCAAAGTTTATGCCCAATGCTGGCTCAGGAAGT
                      ____________________________________________________________
consensus             CAATCCTTGTCTTGCATTCCATCCCTAGCAAAGTTTATGCCCAATGCTGGCTCAGGAAGT
 
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rJMSF017M21-          TCAGGANGGACCTCTTCCACCGGGANGTTGACTTCCCATGTCTCATTCGGAAGCCCATAT
JMFN001G11+           TCAGGAGGGACCTCTTCCACCGGGAGGTTGACTTCCCATGTCTCATTCGGAAGCCCATAT
JMSF017M21+                                                      CATTCGGAAGCCCATAT
JMSF044P10+           TCAGGAGGGACCTCTTCCACCGGGAGGTTGACTTCCCATGTCTCATTCGGAAGCCCATAT
                      ____________________________________________________________
consensus             TCAGGAGGGACCTCTTCCACCGGGAGGTTGACTTCCCATGTCTCATTCGGAAGCCCATAT
 
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rJMSF017M21-          AGACACAAGTTCTCCTTTTCAGGATCACACTGCTGATAGAACTTTTCA            
JMFN001G11+           AGACACAAGTTCTCCTTTTCAGGATCACACTGCTGATAGAACTTTTCAACGTCAGTGGTG
JMSF017M21+           AGACACAAGTTCTCCTTTTCAGGATCACACTGCTGATAGAACTTTTCAACGTCAGTGGTG
JMSF044P10+           AGACACAAGTTCTCCTTTTCAGGATCACACTGCTGATAGAACTTTTCAACGTCAGTGGTG
                      ____________________________________________________________
consensus             AGACACAAGTTCTCCTTTTCAGGATCACACTGCTGATAGAACTTTTCAACGTCAGTGGTG
 
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JMFN001G11+           AGCGCTTTAACTAAGCCAGCCCTACGGCCTTTGAAATCGTTGAACACATCCTCCACAGTC
JMSF017M21+           AGCGCTTTAACTAAGCCAGCCCTACGGCCTTTGAAATCGTTGAACACATCCTCCACAGTC
JMSF044P10+           AGCGCTTTAACTAAGCCAGCCCTACGGCCTTTGAAATCGTTGAACACATCCTCCACAGTC
                      ____________________________________________________________
consensus             AGCGCTTTAACTAAGCCAGCCCTACGGCCTTTGAAATCGTTGAACACATCCTCCACAGTC
 
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JMFN001G11+           CTGGATATCGGCTGCGGAATTCCTTCCATATCCCCCGAGAATTTGACAATTCGACAAAAG
JMSF017M21+           CTGGATATCGGCTGCGGAATTCCTTCCATATCCCCCGAGAATTTGACAATTCGACAAAAG
JMSF044P10+           CTGGATATCGGCTGCGGAATTCCTTCCATATCCCCCGAGAATTTGACAATTCGACAAAAG
                      ____________________________________________________________
consensus             CTGGATATCGGCTGCGGAATTCCTTCCATATCCCCCGAGAATTTGACAATTCGACAAAAG
 
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JMFN001G11+           GTGAGCCAAACCCCCAAATTAAACCTCAAAAATTGCAACTTTGGGTACCAAAAAAAGAAA
JMSF017M21+           GTGAGCCAAACCCCCAAATTAAACCTCAAAAATTGCAACTTTGGGTACCAAAAAAAGAAA
JMSF044P10+           GTGAGCCAAACCCCCAAATTAAACCTCAAAAATTGCAACTTTGGGTACCAAAAAAAGAAA
                      ____________________________________________________________
consensus             GTGAGCCAAACCCCCAAATTAAACCTCAAAAATTGCAACTTTGGGTACCAAAAAAAGAAA
 
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JMFN001G11+           GTTAGGGTTTTCCAGAGCTAGGGTTTTCTTCTTTTACCTGGACTAGAACACAAAACGCAC
JMSF017M21+           GTTAGGGTTTTCCAGAGCTAGGGTTTTCTTCTTTTACCTGGACTAGAACACAAAACGCAC
JMSF044P10+           GTTAGGGTTTTCCAGAGCTAGGGTTTTCTTCTTTTACCTGGACTAGAACACAAAACGCAC
                      ____________________________________________________________
consensus             GTTAGGGTTTTCCAGAGCTAGGGTTTTCTTCTTTTACCTGGACTAGAACACAAAACGCAC
 
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JMFN001G11+           ATAATAATAAATACAAATATAAAATTTGTATATGCGTGAGAGTAAAGGAGCAGAAATTGA
JMSF017M21+           ATAATAATAAATACAAATATAAAATTTGTATATGCGTGAGAGTAAAGGAGCAGAAATTGA
JMSF044P10+           ATAATAATAAATACAAATATAAAATTTGTATATGCGTGAGAGTAAAGGAGCAGAAATTGA
                      ____________________________________________________________
consensus             ATAATAATAAATACAAATATAAAATTTGTATATGCGTGAGAGTAAAGGAGCAGAAATTGA
 
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JMFN001G11+           GAGGAGAGGGAAG                                               
JMSF017M21+           GAGGAGAGGGAAGTTGGGATTGAAGAGAGAGACAAGAGGAGAGGAAACAGCGGGAAG   
JMSF044P10+           GAGGAGAGGGAAGTTGGGATTGAAGAGAGAGACAAGAGGAGAGGAAACAGCGGGAAGCTC
                      ____________________________________________________________
consensus             GAGGAGAGGGAAGTTGGGATTGAAGAGAGAGACAAGAGGAGAGGAAACAGCGGGAAGCTC