Contig 000947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C06Sequence434000947 (3)ref|XP_007018232.1|3e-13Homeodomain-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY15457.1| 773001404 (4)
JMSF031L20Sequence650000947 (3)gb|KDP41486.1|2e-30hypothetical protein JCGZ_15893 [Jatropha curcas]668001404 (4)
JMSF044K21Sequence804000947 (3)gb|KDP41486.1|2e-50hypothetical protein JCGZ_15893 [Jatropha curcas]702001404 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044K21+ TGCACAAAAACTGGAACTGTAATA
                      ____________________________________________________________
consensus TGCACAAAAACTGGAACTGTAATA
 
. : . : . : . : . : . :
JMSF044K21+ TTTGTCCCTTGCGAAATACTTTGGTAACAATTATCTGAAGGGTTCCTACACGTTTGCCCA
                      ____________________________________________________________
consensus TTTGTCCCTTGCGAAATACTTTGGTAACAATTATCTGAAGGGTTCCTACACGTTTGCCCA
 
. : . : . : . : . : . :
JMSF044K21+ GTGGGAATATTTATAGTCAATGGAGCCTCAACAATTGTGCCATTTGACAAATAGGAATCG
                      ____________________________________________________________
consensus GTGGGAATATTTATAGTCAATGGAGCCTCAACAATTGTGCCATTTGACAAATAGGAATCG
 
. : . : . : . : . : . :
JMSF031L20+ CAGAAGCAATAAAGACCTTCACACATGCAGCAGCCTCTGCTGAAGCTTCA
JMSF044K21+ TTTGGCACCCCAGAAGCAATAAAGACCTTCACACATGCAGCAGCCTCTGCTGAAGCTTCA
                      ____________________________________________________________
consensus TTTGGCACCCCAGAAGCAATAAAGACCTTCACACATGCAGCAGCCTCTGCTGAAGCTTCA
 
. : . : . : . : . : . :
JMSF031L20+ CTGCTAACTGCTGGAGAAGCTTCCAATTCATATTCTAAATCACTATCATCATCCAGAGGT
JMSF044K21+ CTGCTAACTGCTGGAGAAGCTTCCAATTCATATTCTAAATCACTATCATCATCCAGAGGT
                      ____________________________________________________________
consensus CTGCTAACTGCTGGAGAAGCTTCCAATTCATATTCTAAATCACTATCATCATCCAGAGGT
 
. : . : . : . : . : . :
JMSF031L20+ AATGCACTGTCATCCAGCCTATCAGCCAATCCATGGCGATAAGCCAAATGACGCCACAGC
JMSF044K21+ AATGCACTGTCATCCAGCCTATCAGCCAATCCATGGCGATAAGCCAAATGACGCCACAGC
                      ____________________________________________________________
consensus AATGCACTGTCATCCAGCCTATCAGCCAATCCATGGCGATAAGCCAAATGACGCCACAGC
 
. : . : . : . : . : . :
JMSF031L20+ ATTTGGTACTCCCTAGCATTTGTAATCCCAGTGCTGCTCTTCTTCACCAACTCATTCCAA
JMSF014C06+ TTCACCAACTCATTCCAA
JMSF044K21+ ATTTGGTACTCCCTAGCATTTGTAATCCCAGTGCTGCTCTTCTTCACCAACTCATTCCAA
                      ____________________________________________________________
consensus ATTTGGTACTCCCTAGCATTTGTAATCCCAGTGCTGCTCTTCTTCACCAACTCATTCCAA
 
. : . : . : . : . : . :
JMSF031L20+ TCGATTTTCACCTCCGTAACCTGCGCCACCTCTCGCAACAATGCCAGCACTGTCGTCGCG
JMSF014C06+ TCGATTTTCACCTCCGTAACCTGCGCCACCTCTCGCAACAATGCCAGCACTGTCGTCGCG
JMSF044K21+ TCGATTTTCACCTCCGTAACCTGCGCCACCTCTCGCAACAATGCCAGCACTGTCGTCGCG
                      ____________________________________________________________
consensus TCGATTTTCACCTCCGTAACCTGCGCCACCTCTCGCAACAATGCCAGCACTGTCGTCGCG
 
. : . : . : . : . : . :
JMSF031L20+ TTGTACCTCTGTAGAAGAGTAGAGATATCTTCTTCACTGACGGAGCACTTTTTCCGCTTA
JMSF014C06+ TTGTACCTCTGTAGAAGAGTAGAGATATCTTCTTCACTGACGGAGCACTTTTTCCGCTTA
JMSF044K21+ TTGTACCTCTGTAGAAGAGTAGAGATATCTTCTTCACTGACGGAGCACTTTTTCCGCTTA
                      ____________________________________________________________
consensus TTGTACCTCTGTAGAAGAGTAGAGATATCTTCTTCACTGACGGAGCACTTTTTCCGCTTA
 
. : . : . : . : . : . :
JMSF031L20+ CCCGATTTCTCAACCATTTTTAACTCTCCGTATGACGTATGTGAGTATTTCTTTCTAAGA
JMSF014C06+ CCCGATTTCTCAACCATTTTTAACTCTCCGTATGACGTATGTGAGTATTTCTTTCTAAGA
JMSF044K21+ CCCGATTTCTCAACCATTTTTAACTCTCCGTATGACGTATGTGAGTATTTCTTTCTAAGA
                      ____________________________________________________________
consensus CCCGATTTCTCAACCATTTTTAACTCTCCGTATGACGTATGTGAGTATTTCTTTCTAAGA
 
. : . : . : . : . : . :
JMSF031L20+ TTGGACTTTGTTTTCCCGCGAAACGGTTATGGAGCGGGGGAGGAGGGTTTTAGCGAAGAT
JMSF014C06+ TTGGACTTTGTTTTCCCGCGAAACGGTTATGGAGCGGGGGAGGAGGGTTTTAGCGAAGAT
JMSF044K21+ TTGGACTTTGTTTTCCCGCGAAACGGTTATGGAGCGGGGGAGGAGGGTTTTAGCGAAGAT
                      ____________________________________________________________
consensus TTGGACTTTGTTTTCCCGCGAAACGGTTATGGAGCGGGGGAGGAGGGTTTTAGCGAAGAT
 
. : . : . : . : . : . :
JMSF031L20+ AGTAAAAACCCTAAGACGGAAAGGAGGATGATGACGTTTGCCGGTGACGGAGTAAAAAAG
JMSF014C06+ AGTAAAAACCCTAAGACGGAAAGGAGGATGATGACGTTTGCCGGTGACGGAGTAAAAAAG
JMSF044K21+ AGTAAAAACCCTAAGACGGAAAGGAGGATGATGACGTTTGCCGGTGACGGAGTAAAAAAG
                      ____________________________________________________________
consensus AGTAAAAACCCTAAGACGGAAAGGAGGATGATGACGTTTGCCGGTGACGGAGTAAAAAAG
 
. : . : . : . : . : . :
JMSF031L20+ CGACCGGCTGTGGAAGAAAGATAAACGGATGTGTACCTCAAGTACCGGTGTGAGGGTGGG
JMSF014C06+ CGACCGGCTGTGGAAGAAAGATAAACGGATGTGTACCTCAAGTACCGGTGTGAGGGTGGG
JMSF044K21+ CGACCGGCTGTGGAAGAAAGATAAACGGATGTGTACCTCAAGTACCGGTGTGAGGGTGGG
                      ____________________________________________________________
consensus CGACCGGCTGTGGAAGAAAGATAAACGGATGTGTACCTCAAGTACCGGTGTGAGGGTGGG
 
. : . : . : . : . : . :
JMSF031L20+ TGTGGAGACAGGCGCCGGGGACCGGGGTTTTGGGGGAAGAACGAGGAGGCCACTC
JMSF014C06+ TGTGGAGACAGGCGCCGGGGACCGGGGTTTTGGGGGAAGAACGAGGAGGCCACTC
JMSF044K21+ TGTGGAGACAGGCGCCGGGGACCGGGGTTTTGGGGGAAGAACGAGGAGGCCACTCGGTCC
                      ____________________________________________________________
consensus TGTGGAGACAGGCGCCGGGGACCGGGGTTTTGGGGGAAGAACGAGGAGGCCACTCGGTCC