Contig 000946:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034M10Sequence582000946 (3)
JMSF044J12Sequence609000946 (3)gb|AIZ66165.1|2e-04TOC1 [Ipomoea nil]690008635 (2)gb|AIZ66165.1|5e-60TOC1 [Ipomoea nil]
JMSF051D23Sequence571000946 (3)713008635 (2)gb|AIZ66165.1|1e-67TOC1 [Ipomoea nil]

Alignment

This contig is upended


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JMSF044J12+                                                              TCTATGAAC
                      ____________________________________________________________
consensus                                                                TCTATGAAC
 
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JMSF051D23+                                        CTCCATCATCGCTATTCAAAGAACAATTAAG
JMSF034M10+                                TCATTNTTCTCCATCATCGCTATTCAAAGAACAATTAAG
JMSF044J12+           CCATCCCCAGTNTTCACAATNTCATTCTTCTCCATCATCGCTATTCAAAGAACAATTAAG
                      ____________________________________________________________
consensus             CCATCCCCAGTNTTCACAATNTCATTCTTCTCCATCATCGCTATTCAAAGAACAATTAAG
 
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JMSF051D23+           CAATATACATATACGTTCATAGAAAAATATACAACAACAAAAAAAGGTTAGTGTTCAGCT
JMSF034M10+           CAATATACATATACGTTCATAGAAAAATATACAACAACAAAAAAAGGTTAGTGTTCAGCT
JMSF044J12+           CAATNTACATATACGTTCATAGAAAAATATACAACANCAAAAAAAGGTTAGTGTTCAGCT
                      ____________________________________________________________
consensus             CAATATACATATACGTTCATAGAAAAATATACAACAACAAAAAAAGGTTAGTGTTCAGCT
 
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JMSF051D23+           CAAACCCCTAAAAATCTAGTATTAAAGAGCCTCTATATAGAAAATTTTTCTATTTACTGC
JMSF034M10+           CAAACCCCTAAAAATCTAGTATTAAAGAGCCTCNATATAGAAAATTTTTCTATTTACTGC
JMSF044J12+           CAAACCCCTAAAAATCTAGTATTAAAGAGCCTCTATATAGAAAATTTTTCTATTTACTGC
                      ____________________________________________________________
consensus             CAAACCCCTAAAAATCTAGTATTAAAGAGCCTCTATATAGAAAATTTTTCTATTTACTGC
 
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JMSF051D23+           TAAAACTAAAGCGTCTAATTTCGAAAACCCCATTTACAGATCACACACTAATCCCAATCA
JMSF034M10+           TAAAACTAAAGCGTCTAATTTCGAAAACCCCATTTACAGATCNCACACTAATCCCAATCA
JMSF044J12+           TAAAACTAAAGCGTNTAATTTCGAAAACCCCATTTACAGATCACACACTAATCCCAATCA
                      ____________________________________________________________
consensus             TAAAACTAAAGCGTCTAATTTCGAAAACCCCATTTACAGATCACACACTAATCCCAATCA
 
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JMSF051D23+           AATATCCAAAATGAAAAAAAATAAATCTATAATTTTCTAATAATTCTTCCCAATAATTTT
JMSF034M10+           AATATCCAAAATGAAAAAAAATAAATCTATAATTTTCTAATAATTCTTCCCAATAATTTT
JMSF044J12+           AATATCCAAAATGAAAAAAAATAAATCTATAATTTTCTAATAATTCTTCCCAATAATTTT
                      ____________________________________________________________
consensus             AATATCCAAAATGAAAAAAAATAAATCTATAATTTTCTAATAATTCTTCCCAATAATTTT
 
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JMSF051D23+           CTAATAATTACGATGCGCACCGGAGGCGCAACTTATCTATAAACCCTGACACGGCGAATT
JMSF034M10+           CTAATAATTACGATGCGCACCGGAGGCGCAACTTATCTATAAACCCTGACACGGCGAATT
JMSF044J12+           CTAATAATTACGATGCGCNCCGGAGGCGCAACTTATCTATAAACCCTGACACGGCGAATT
                      ____________________________________________________________
consensus             CTAATAATTACGATGCGCACCGGAGGCGCAACTTATCTATAAACCCTGACACGGCGAATT
 
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JMSF051D23+           CCGGCCATCTAACGGCGACGGGTTAGACTGTGAAATTAGTAAAAAAAAATCAACGACTGG
JMSF034M10+           CCGGCCATCTAACGGCGACGGGTTAGACTGTGAAATTAGTAAAAAAAAATCAACGACTGG
JMSF044J12+           CCGGCCATCTAACGGNGACGGGTTAGACTGTGAAATTAGTAAAAAAAAATCAACGACTGG
                      ____________________________________________________________
consensus             CCGGCCATCTAACGGCGACGGGTTAGACTGTGAAATTAGTAAAAAAAAATCAACGACTGG
 
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JMSF051D23+           AAGGAAAAACAAAAAATAAAAAAGAAAAAACAAAAAGAAAAAGAAAAGCTTCGCCAGCCC
JMSF034M10+           AAGGAAAAACAAAAAATAAAAAAGAAAAAACAAAAAGAAAAAGAAAAGCTTCGCCAGCCC
JMSF044J12+           AAGGAAAAACAAAAAATAAAAAAGAAAAAACAAAAAGAAAAAGAAAAGCTTCGCCAGCCC
                      ____________________________________________________________
consensus             AAGGAAAAACAAAAAATAAAAAAGAAAAAACAAAAAGAAAAAGAAAAGCTTCGCCAGCCC
 
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JMSF051D23+           GCCGCCTCCGGTGCACGTTAGCGTCCGCCCTTTCAGCCAACCTGTCTTCTACCTTCTAGA
JMSF034M10+           GCCGCCTCCGGTGCACGTTAGCGTCCGCCCTTTCAGCCAACCTGTCTTCTACCTTCTAGA
JMSF044J12+           GCCGCCTCCGGTGCACGTTAGCGTCCGCCCTTTCAGCCAACCTGTCTTCTACCTTCTAGA
                      ____________________________________________________________
consensus             GCCGCCTCCGGTGCACGTTAGCGTCCGCCCTTTCAGCCAACCTGTCTTCTACCTTCTAGA
 
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JMSF051D23+           GCGAGAAAAGAGGGAGAAGCTCCGAGTCCGGCTTCTGGTGGTTGAGGAAGAAGCAGCTCC
JMSF034M10+           GCGAGAAAAGAGGGAGAAGCTCCGAGTCCGGCTTCTGGTGGTTGAGGAAGAAGCAGCTCC
JMSF044J12+           GCGAGAAAAGAGGGAGAAGCTCCGAGTCCGGCTTCTGGTGGTTGAGGAAGAAGCAGCTCC
                      ____________________________________________________________
consensus             GCGAGAAAAGAGGGAGAAGCTCCGAGTCCGGCTTCTGGTGGTTGAGGAAGAAGCAGCTCC