| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN019I08 | Sequence | 638 | 000940 (7) | ref|XP_010261945.1| | 2e-69 | PREDICTED: general transcription factor IIE subunit 2-like [Nelumbo nucifera] r | |||||
| JMSF023O16 | Sequence | 673 | 000940 (7) | ref|XP_002283557.1| | 2e-77 | PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera] emb|CBI3 | 773 | 000940 (7) | ref|XP_010261945.1| | 9e-105 | PREDICTED: general transcription factor IIE subunit 2-like [Nelumbo nucifera] r |
| JMSF043N08 | Sequence | 764 | 000940 (7) | ref|XP_002283557.1| | 7e-78 | PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera] emb|CBI3 | 740 | 000940 (7) | ref|XP_010261945.1| | 9e-113 | PREDICTED: general transcription factor IIE subunit 2-like [Nelumbo nucifera] r |
| JMSF048N11 | Sequence | 685 | 000940 (7) | ref|XP_002283557.1| | 2e-80 | PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera] emb|CBI3 | 772 | 000940 (7) | ref|XP_010261945.1| | 2e-121 | PREDICTED: general transcription factor IIE subunit 2-like [Nelumbo nucifera] r |
This contig is upended
. : . : . : . : . : . :
rJMSF023O16- CA
____________________________________________________________
consensus CA
. : . : . : . : . : . :
rJMSF023O16- GATGCCTGGGATATCACCAGTTACAATCTCATGTATACTCTTTATAAGGCAGTATTATAC
____________________________________________________________
consensus GATGCCTGGGATATCACCAGTTACAATCTCATGTATACTCTTTATAAGGCAGTATTATAC
. : . : . : . : . : . :
rJMSF023O16- TAAAGAAAATATAAAAATCAGTTGAATGGGGACACAGAACATTACATAGGATGAACTAGA
rJMSF043N08- AAATATAAAAATCAGTTGAATGGGGACACAGAACATTACATAGGATGAACTAGA
rJMSF048N11- AAATATAAAAATCAGTTGAATGGGGACACAGAACATTACATAGGATGAACTAGA
____________________________________________________________
consensus TAAAGAAAATATAAAAATCAGTTGAATGGGGACACAGAACATTACATAGGATGAACTAGA
. : . : . : . : . : . :
rJMSF023O16- CCACAGGCCATGGGAAGAACCAAAGGCCATTATAGAACATATGTGAAAAAAACAAAATCC
rJMSF043N08- CCACAGGCCATGGGAAGAACCAAAGGCCATTATAGAACATATGTGAAAAAAACAAAATCC
rJMSF048N11- CCACAGGCCATGGGAAGAACCAAAGGCCATTATAGAACATATGTGAAAAAAACAAAATCC
____________________________________________________________
consensus CCACAGGCCATGGGAAGAACCAAAGGCCATTATAGAACATATGTGAAAAAAACAAAATCC
. : . : . : . : . : . :
rJMSF023O16- AAATGCTTCTTAATTCACCATCATTAAGATTTGAGGTTTACAAAGAGCTCTGGAAGATGA
rJMSF043N08- AAATGCTTCTTAATTCACCATCATTAAGATTTGAGGTTTGCAAAGAGCTCTGGAAGATGA
JMFN019I08+ TTGAGGTTTGCAAAGAGCTCTGGAAGATGA
rJMSF048N11- AAATGCTTCTTAATTCACCATCATTAAGATTTGAGGTTTGCAAAGAGCTCTGGAAGATGA
____________________________________________________________
consensus AAATGCTTCTTAATTCACCATCATTAAGATTTGAGGTTTGCAAAGAGCTCTGGAAGATGA
. : . : . : . : . : . :
rJMSF023O16- GCATTTGTAAGCTTGGTCCTCTTGCTGATTTCGTGCTTCTTCTTCTTGGTTTTGGGCTTG
rJMSF043N08- GCATTTGTAAGCTTGGTCCTCTTGCTGATTTCGTGCTTCTTCTTCTTGGTTTTGGGCTTG
JMFN019I08+ GCATTTGTAAGCTTGGTCCTCTTGCTGATTTCGTGCTTCTTCTTCTTGGTTTTGGGCTTG
rJMSF048N11- GCATTTGTAAGCTTGGTCCTCTTGCTGATTTCGTGCTTCTTCTTCTTGGTTTTGGGCTTG
____________________________________________________________
consensus GCATTTGTAAGCTTGGTCCTCTTGCTGATTTCGTGCTTCTTCTTCTTGGTTTTGGGCTTG
. : . : . : . : . : . :
rJMSF023O16- TTGGCCATGCCGTGGACCTGTGCCATCGCCCTCCTCTTGGCAGTGTTTGTAGCGGGTTTC
rJMSF043N08- TTGGCCATGCCGTGGACCTGTGCCATCGCCCTCCTCTTGGCAGTGTTTGTAGCGGGTTTC
JMFN019I08+ TTGGCCATGCCGTGGACCTGTGCCATCGCCCTCCTCTTGGCAGTGTTTGTAGCGGGTTTC
rJMSF048N11- TTGGCCATGCCGTGGACCTGTGCCATCGCCCTCCTCTTGGCAGTGTTTGTAGCGGGTTTC
____________________________________________________________
consensus TTGGCCATGCCGTGGACCTGTGCCATCGCCCTCCTCTTGGCAGTGTTTGTAGCGGGTTTC
. : . : . : . : . : . :
rJMSF023O16- ATCCCGTTTTTCAGGAGATCTTTTTCAATGTCGAGCATGTCACGGGGCAGTTCGATTTCC
rJMSF043N08- ATCCCGTTTTTCAGGAGATCTTTTTCAATGTCGAGCATGTCACGGGGCAGTTCGATTTCC
JMFN019I08+ ATCCCGTTTTTCAGGAGATCTTTTTCAATGTCGAGCATGTCACGGGGCAGTTCGATTTCC
rJMSF048N11- ATCCCGTTTTTCAGGAGATCTTTTTCAATGTCGAGCATGTCACGGGGCAGTTCGATTTCC
____________________________________________________________
consensus ATCCCGTTTTTCAGGAGATCTTTTTCAATGTCGAGCATGTCACGGGGCAGTTCGATTTCC
. : . : . : . : . : . :
rJMSF023O16- AGGAAGAGCTGTTTGATATCTTCATCGACCTTGTTGGTGCGGACTTTGGGGTCATTTGGA
rJMSF043N08- AGGAAGAGCTGTTTGATATCTTCATCGACCTTGTTGGTGCGGACTTTGGGGTCATTTGGA
JMFN019I08+ AGGAAGAGCTGTTTGATATCTTCATCGACCTTGTTGGTGCGGACTTTGGGGTCATTTGGA
rJMSF048N11- AGGAAGAGCTGTTTGATATCTTCATCGACCTTGTTGGTGCGGACTTTGGGGTCATTTGGA
____________________________________________________________
consensus AGGAAGAGCTGTTTGATATCTTCATCGACCTTGTTGGTGCGGACTTTGGGGTCATTTGGA
. : . : . : . : . : . :
rJMSF023O16- TAGGCAATGTCCTCCTGAGAGTCGAAATTTGACAGCAGCCACACTTGTCCAGCGGCCTTC
rJMSF043N08- TAGGCAATGTCCTCCTGAGAGTCGAAATTTGACAGCAGCCACACTTGTCCAGCGGCCTTC
JMFN019I08+ TAGGCAATGTCCTCCTGAGAGTCGAAATTTGACAGCAGCCACACTTGTCCAGCGGCCTTC
rJMSF048N11- TAGGCAATGTCCTCCTGAGAGTCGAAATTTGACAGCAGCCACACTTGTCCAGCGGCCTTC
____________________________________________________________
consensus TAGGCAATGTCCTCCTGAGAGTCGAAATTTGACAGCAGCCACACTTGTCCAGCGGCCTTC
. : . : . : . : . : . :
rJMSF023O16- AAAGATTGCAGGTCCTCCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
rJMSF043N08- AAAGATTGCAGGTCCTCCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
JMFN019I08+ AAAGATTGCAGGTCCTCCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
rJMSF048N11- AAAGATTGCAGGTCCTCCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
JMSF048N11+ GATTGCAGGTCNTCCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
JMSF023O16+ ATGACAGTNGGGTATGCATCCTTGAGATCAATGATAGGGATA
JMSF043N08+ CCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
____________________________________________________________
consensus AAAGATTGCAGGTCCTCCATGACAGTTGGGTATGCATCCTTGAGATCAATGATAGGGATA
. : . : . : . : . : . :
rJMSF023O16- CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
rJMSF043N08- CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
JMFN019I08+ CCCTCACCATATC
rJMSF048N11- CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
JMSF048N11+ CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
JMSF023O16+ CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
JMSF043N08+ CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
____________________________________________________________
consensus CCCTCACCATATCTCCGTATTAAGGTCAGTAATTGTTCCTTGTTTTTCAGATCATGCTTG
. : . : . : . : . : . :
rJMSF023O16- GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
rJMSF043N08- GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
rJMSF048N11- GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
JMSF048N11+ GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
JMSF023O16+ GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
JMSF043N08+ GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
____________________________________________________________
consensus GCCTTGTAAGAGAATCGTCTGCCATCGTAATGGACTTTAGGATTGTTTCTCAAACTGTCA
. : . : . : . : . : . :
rJMSF023O16- AATACAGCCNTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGT
rJMSF043N08- AATACAGCCTTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGTTCCGGTGTA
rJMSF048N11- AATACAGCCTTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGTTCCGGTGTA
JMSF048N11+ AATACAGCCTTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGTTCCGGTGTA
JMSF023O16+ AATACAGCCTTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGTTCCGGTGTA
JMSF043N08+ AATACAGCCTTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGTTCCGGTGTA
____________________________________________________________
consensus AATACAGCCTTGTTTGCATTGATATCAACGTAGCATTGTTCATTTATTTGTTCCGGTGTA
. : . : . : . : . : . :
rJMSF043N08- AAAGCTTGCCTTGTATCTA
rJMSF048N11- AAAGCTTGCCTTGTATCTAATAGCAAGTTTATGACACGTTTGATCTGGGCTCCCACTG
JMSF048N11+ AAAGCTTGCCTTGTATCTAATAGCAAGTTTATGACACGTTTGATCTGGGCTCCCACTGGG
JMSF023O16+ AAAGCTTGCCTTGTATCTAATAGCAAGTTTATGACACGTTTGATCTGGGCTCCCACTGGG
JMSF043N08+ AAAGCTTGCCTTGTATCTAATAGCAAGTTTATGACACGTTTGATCTGGGCTCCCACTGGG
____________________________________________________________
consensus AAAGCTTGCCTTGTATCTAATAGCAAGTTTATGACACGTTTGATCTGGGCTCCCACTGGG
. : . : . : . : . : . :
JMSF048N11+ GATTTCCTTATGGTGTTAATGTGTTGAAGTCTTTCTGTGTCATTAGAAAATTTGACTGCA
JMSF023O16+ GATTTCCTTATGGTGTTAATGTGTTGAAGTCTTTCTGTGTCATTAGAAAATTTGACTGCA
JMSF043N08+ GATTTCCTTATGGTGTTAATGTGTTGAAGTCTTTCTGTGTCATTAGAAAATTTGACTGCA
____________________________________________________________
consensus GATTTCCTTATGGTGTTAATGTGTTGAAGTCTTTCTGTGTCATTAGAAAATTTGACTGCA
. : . : . : . : . : . :
JMSF048N11+ GGGGCAGGAGCTTTTGCATTTGCAGAAGAATTGGAAGACTTTGAAGGAGTTGGCCTAGAA
JMSF023O16+ GGGGCAGGAGCTTTTGCATTTGCAGAAGAATTGGAAGACTTTGAAGGAGTTGGCCTAGAA
JMSF043N08+ GGGGCAGGAGCTTTTGCATTTGCAGAAGAATTGGAAGACTTTGAAGGAGTTGGCCTAGAA
____________________________________________________________
consensus GGGGCAGGAGCTTTTGCATTTGCAGAAGAATTGGAAGACTTTGAAGGAGTTGGCCTAGAA
. : . : . : . : . : . :
JMSF048N11+ CTTCCTGCTTTGGCTGCAATACTGGAAAGGGTTGATTGGCACTTCTCTTGTTGCTTCTGG
JMSF023O16+ CTTCCTGCTTTGGCTGCAATACTGGAAAGGGTTGATTGGCACTTCTCTTGTTGCTTCTGG
JMSF043N08+ CTTCCTGCTTTGGCTGCAATACTGGAAAGGGTTGATTGGCACTTCTCTTGTTGCTTCTGG
____________________________________________________________
consensus CTTCCTGCTTTGGCTGCAATACTGGAAAGGGTTGATTGGCACTTCTCTTGTTGCTTCTGG
. : . : . : . : . : . :
JMSF048N11+ AACTTAGTCAAGCTGTCTTGCAAAAAGGCCATCTCAAAGCAGAAAAGCCAACCTCTCTGC
JMSF023O16+ AACTTAGTCAAGCTGTCTTGCAAAAAGGCCATCTCAAAGCAGAAAAGCCAACCTCTCTGC
JMSF043N08+ AACTTAGTCAAGCTGTCTTGCAAAAAGGCCATCTCAAAGCAGAAAAGCCAACCTCTCTGC
____________________________________________________________
consensus AACTTAGTCAAGCTGTCTTGCAAAAAGGCCATCTCAAAGCAGAAAAGCCAACCTCTCTGC
. : . : . : . : . : . :
JMSF048N11+ AAGCAATACTCTGACAGCGATGATTGAATCGCGACAGGCAATTTGCAGAGATGACAAATA
JMSF023O16+ AAGCAATACTCTGACAGCGATGATTGAATCGCGACAGGCAATTTGCAGAGATGACAAATA
JMSF043N08+ AAGCAATACTCTGACAGCGATGATTGAATCGCGACAGGCAATTTGCAGAGATGACAAATA
____________________________________________________________
consensus AAGCAATACTCTGACAGCGATGATTGAATCGCGACAGGCAATTTGCAGAGATGACAAATA
. : . : . : . : . : . :
JMSF048N11+ TGGTTTCCGTACGGAGATTTAGCTGGTATTTTGCGCACGATGAAATCCCAAACTGTAGAG
JMSF023O16+ TGGTTTCCGTACGGAGATTTAGCTGGTATTTTGCGCACGATGAAATCCCAAACTGTAGAG
JMSF043N08+ TGGTTTCCGTACGGAGATTTAGCTGGTATTTTGCGCACGATGAAATCCCAAACTGTAGAG
____________________________________________________________
consensus TGGTTTCCGTACGGAGATTTAGCTGGTATTTTGCGCACGATGAAATCCCAAACTGTAGAG
. : . : . : . : . : . :
JMSF048N11+ AGAAGAGAAGAGAGAGAGAGAGATC
JMSF023O16+ AGAAGAGAAGAGAGAGAGAGAGATC
JMSF043N08+ AGAAGAGAAGAGAGAGAGAGAGATCACGAAGAGAAATTGGAGAAAGGCAGAGAGAGACTC
____________________________________________________________
consensus AGAAGAGAAGAGAGAGAGAGAGATCACGAAGAGAAATTGGAGAAAGGCAGAGAGAGACTC
. : . : . : . : . : . :
JMSF043N08+ AATTTATATGGCGATTGGCGAGCTGGAAATATTGCTGACCTAGCGCTTCCTTAAACGGTC
____________________________________________________________
consensus AATTTATATGGCGATTGGCGAGCTGGAAATATTGCTGACCTAGCGCTTCCTTAAACGGTC