Contig 000939:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004J22Sequence345000939 (7)225000939 (7)
JMSF004J24Sequence286000939 (7)emb|CDO99935.1|2e-04unnamed protein product [Coffea canephora]
JMSF043M22Sequence613000939 (7)emb|CDO99935.1|5e-23unnamed protein product [Coffea canephora]565000939 (7)emb|CDO99935.1|3e-23unnamed protein product [Coffea canephora]
JMSF045G14Sequence613000939 (7)emb|CDO99935.1|5e-23unnamed protein product [Coffea canephora]576000939 (7)emb|CDO99935.1|4e-23unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF004J22-                                                                  GGGAA
                      ____________________________________________________________
consensus                                                                    GGGAA
 
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JMSF004J22-           GGGAAAAGTCCTGTGAGTCTCAGGAGGATTGGGATTTTCCATATTTACTCTCCCCTGATG
JMSF045G14-                                                        GACTCTCCCCTGATG
rJMSF045G14+                                                       GACTCTCCCCTGATG
rJMSF043M22+                                                       GACTCTCCCCTGATG
JMSF043M22-                                                        GACTCTCCCCTGATG
                      ____________________________________________________________
consensus             GGGAAAAGTCCTGTGAGTCTCAGGAGGATTGGGATTTTCCATATTGACTCTCCCCTGATG
 
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JMSF004J22-           ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
JMSF045G14-           ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
rJMSF045G14+          ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
rJMSF043M22+          ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
JMSF043M22-           ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
                      ____________________________________________________________
consensus             ACTTAGAAAGAAATAAAGAAAGACAGATTCATCATGCTGATATCTGCTATAAACTATGTT
 
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JMSF004J22-           TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACA-GAAGA
JMSF045G14-           TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
rJMSF045G14+          TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
rJMSF043M22+          TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
JMSF043M22-           TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
                      ____________________________________________________________
consensus             TCAGGAGCACTATATGTAAAGGGAGCAGACACCCGAGAAAGACGAAACATTACAGGAAGA
 
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JMSF004J22-           GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
rJMSF004J22+                                                 TTAGCAGCNGTNGAAATCAGT
rJMSF004J24+                                             GACATTAGCAGCTGTCGAAATCAGT
JMSF045G14-           GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
rJMSF045G14+          GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
rJMSF043M22+          GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
JMSF043M22-           GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
                      ____________________________________________________________
consensus             GTGAAGGCGCAAGGCAGGAGAGAGCTTCTCTTTTCGACATTAGCAGCTGTCGAAATCAGT
 
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JMSF004J22-           GACTCCNAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF004J22+          GACTCCANAACCGAGCTTCTTNACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF004J24+          GNCTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
JMSF045G14-           GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF045G14+          GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
rJMSF043M22+          GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
JMSF043M22-           GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
                      ____________________________________________________________
consensus             GACTCCAAAACCGAGCTTCTTAACAAGTTTTTAAAGAAATCTGAAGAGAACAAGGAGAAA
 
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JMSF004J22-           AATGACNAGGAGAGGCTGGAGAGCTACTATNAGCGCA                       
rJMSF004J22+          AATGACAAGGAGAGGCTGGAGAGCTCCTATANGCGCAACTACAAAGACTATTTTGGTGTG
rJMSF004J24+          AATGACAAGGAGAGGCTGGAGAGCTNCTATAAGCGCAACTACAAAGACTATTTTGGTGTG
JMSF045G14-           AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
rJMSF045G14+          AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
rJMSF043M22+          AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
JMSF043M22-           AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
                      ____________________________________________________________
consensus             AATGACAAGGAGAGGCTGGAGAGCTACTATAAGCGCAACTACAAAGACTATTTTGGTGTG
 
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rJMSF004J22+          TTAGAAGGGACTCTGAGGCAAAANTTGGAAAACAAAGATGCAAATTTCTGAATCAGAGCA
rJMSF004J24+          TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGATGCAAATTTCTGAATCAGAGCA
JMSF045G14-           TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
rJMSF045G14+          TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
rJMSF043M22+          TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
JMSF043M22-           TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
                      ____________________________________________________________
consensus             TTAGAAGGGACTCTGAGGCAAAAGTTGGAAAACAAAGA-GCAAATTTCTGAATCAGAGCA
 
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rJMSF004J22+          GAAGATTCTTGAATGGC                                           
rJMSF004J24+          GAAGATTCNTGAATGGCTTGACAAAAACAAGTAAATTACCTATGCCTAGACGTAAGGGAA
JMSF045G14-           GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
rJMSF045G14+          GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
rJMSF043M22+          GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
JMSF043M22-           GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
                      ____________________________________________________________
consensus             GAAGATTCTTGAATGGCTTGACAAAAACAAGTAAATTA-CTATGACTAGATGTAAGGGAA
 
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rJMSF004J24+          TATGTCTGTTCAGATAAATCT                                       
JMSF045G14-           TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
rJMSF045G14+          TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
rJMSF043M22+          TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
JMSF043M22-           TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
                      ____________________________________________________________
consensus             TATGTCTGTTCAGATAAATCTTGTGTTTCGAAGCAAAGTTAAAGCATTTGAAATGCAGAG
 
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JMSF045G14-           ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
rJMSF045G14+          ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
rJMSF043M22+          ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTC 
JMSF043M22-           ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
                      ____________________________________________________________
consensus             ATAGAGCAATCAAGAACATTGGCACCCACGGTTTTTCCCTCATTCTGCTACTTCATTTCA
 
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JMSF045G14-           ATCTGTGTATTTGCTTTAATTTCGGGTTGGGTATTGATGAACTACAAGCTAAAAAAAAAA
rJMSF045G14+          ATCTGTGTATTTGCTT                                            
JMSF043M22-           ATCTGTGTATTTGCTTTAATTTCGGGTTGGGTATTGATGAACTACAAGCTAAAAAAAAAA
                      ____________________________________________________________
consensus             ATCTGTGTATTTGCTTTAATTTCGGGTTGGGTATTGATGAACTACAAGCTAAAAAAAAAA