Contig 000938:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040D05Sequence689000938 (2)ref|XP_009592652.1|4e-17PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Nicotiana tome889004789 (3)ref|XP_009793255.1|6e-69PREDICTED: uncharacterized protein LOC104240177 isoform X1 [Nicotiana sylvestri
JMSF043M02Sequence743000938 (2)ref|XP_009592652.1|3e-22PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Nicotiana tome673004789 (3)ref|XP_009793255.1|6e-52PREDICTED: uncharacterized protein LOC104240177 isoform X1 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF043M02+                                                TTACAACACTTTGCACTGTAGGA
                      ____________________________________________________________
consensus                                                  TTACAACACTTTGCACTGTAGGA
 
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JMSF040D05+                            GGTCAATGACATGTTCCCACTTCTCATTACAGTGGAGCTTCTC
JMSF043M02+           AAAAAGATCATCTCCTCGGTCAATGACATGTTCCCACTTCTCATTACAGTGGAGCTTCTC
                      ____________________________________________________________
consensus             AAAAAGATCATCTCCTCGGTCAATGACATGTTCCCACTTCTCATTACAGTGGAGCTTCTC
 
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JMSF040D05+           ATCCAAGTTTTCTATCAAATCCTTCAGGTCCAAATCAGATATAATTGTAGAAACCCTAGG
JMSF043M02+           ATCCAAGTTTTCTATCAAATCCTTCAGGTCCAAATCAGATATAATTGTAGAAACCCTAGG
                      ____________________________________________________________
consensus             ATCCAAGTTTTCTATCAAATCCTTCAGGTCCAAATCAGATATAATTGTAGAAACCCTAGG
 
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JMSF040D05+           TTGGGGGAGAAGGGGTGAAGAAATGTGTGCATCAGGATCGCAGTTAGTGCCGGAACATGG
JMSF043M02+           TTGGGGGAGAAGGGGTGAAGAAATGTGTGCATCAGGATCGCAGTTAGTGCCGGAACATGG
                      ____________________________________________________________
consensus             TTGGGGGAGAAGGGGTGAAGAAATGTGTGCATCAGGATCGCAGTTAGTGCCGGAACATGG
 
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JMSF040D05+           AGGTGCAACATCTCCTTTACCGGCGGATTTGCATAAAAAGGAAGAAGAAGAAAACCACGA
JMSF043M02+           AGGTGCAACATCTCCTTTACCGGCGGATTTGCATAAAAAGGAAGAAGAAGAAAACCACGA
                      ____________________________________________________________
consensus             AGGTGCAACATCTCCTTTACCGGCGGATTTGCATAAAAAGGAAGAAGAAGAAAACCACGA
 
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JMSF040D05+           TAATCGGAGACGGGAAGAGCGAATTCTGTTGAGCAAGTGGCAAGTTAGTATGATGAGCAC
JMSF043M02+           TAATCGGAGACGGGAAGAGCGAATTCTGTTGAGCAAGTGGCAAGTTAGTATGATGAGCAC
                      ____________________________________________________________
consensus             TAATCGGAGACGGGAAGAGCGAATTCTGTTGAGCAAGTGGCAAGTTAGTATGATGAGCAC
 
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JMSF040D05+           GACCCCCATAGTATAGGTATATGAACAGCCGCTCAGAATCCATCCCCTTGCTCCTCCTCC
JMSF043M02+           GACCCCCATAGTATAGGTATATGAACAGCCGCTCAGAATCCATCCCCTTGCTCCTCCTCC
                      ____________________________________________________________
consensus             GACCCCCATAGTATAGGTATATGAACAGCCGCTCAGAATCCATCCCCTTGCTCCTCCTCC
 
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JMSF040D05+           ATCAACCCTTTCTTCCCAGAACTTTCCCGGCGACGAAACCAGCAATCCAATTCCCGATTC
JMSF043M02+           ATCAACCCTTTCTTCCCAGAACTTTCCCGGCGACGAAACCAGCAATCCAATTCCCGATTC
                      ____________________________________________________________
consensus             ATCAACCCTTTCTTCCCAGAACTTTCCCGGCGACGAAACCAGCAATCCAATTCCCGATTC
 
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JMSF040D05+           CGACGGCCACATCCCGCCCCAATATTTCATTTCTCCGATGATGAT-AAATGATCGCTACA
JMSF043M02+           CGACGGCCACATCCCGCCCCAATATTTCATTTCTCCGATGATGATAAAATGATCGCTACA
                      ____________________________________________________________
consensus             CGACGGCCACATCCCGCCCCAATATTTCATTTCTCCGATGATGATAAAATGATCGCTACA
 
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JMSF040D05+           CTGATTTACCTTACTTCCAGAAATGCGAGCACATATGAATGGACCTCCGCCGTGTTCTTC
JMSF043M02+           CTGATTTACCTTACTTCCAGAAATGCGAGCACATATGAATGGACCTCCGCCGTGTTCTTC
                      ____________________________________________________________
consensus             CTGATTTACCTTACTTCCAGAAATGCGAGCACATATGAATGGACCTCCGCCGTGTTCTTC
 
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JMSF040D05+           CCCTTTCTCTACCCTTTCTTCTCTGTTCCTCCGGGAAATCTAGCCGCTCCGGCTAAGGCG
JMSF043M02+           CCCTTTCTCTACCCTTTCTTCTCTGTTCCTCCGGGAAATCTAGCCGCTCCGGCTAAGGCG
                      ____________________________________________________________
consensus             CCCTTTCTCTACCCTTTCTTCTCTGTTCCTCCGGGAAATCTAGCCGCTCCGGCTAAGGCG
 
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JMSF040D05+           CGAAGCGTATGCATTCAATATTCGAGTTGAGTTTGGGTTACAATCCCAATTCCCAAGGAG
JMSF043M02+           CGAAGCGTATGCATTCAATATTCGAGTTGAGTTTGGGTTACAATCCCAATTCCCAAGGAG
                      ____________________________________________________________
consensus             CGAAGCGTATGCATTCAATATTCGAGTTGAGTTTGGGTTACAATCCCAATTCCCAAGGAG
 
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JMSF040D05+           GCATCGATTGCACGTATCGAGGTTTCGGGTTTGGTTGACAGCTTGC              
JMSF043M02+           GCATCGATTGCACGTATCGAGGTTTCGGGTTTGGTTGACAGCTTGCAGGTATGGCGGGTC
                      ____________________________________________________________
consensus             GCATCGATTGCACGTATCGAGGTTTCGGGTTTGGTTGACAGCTTGCAGGTATGGCGGGTC