Contig 000933:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010N08Sequence242000933 (2)ref|XP_009793696.1|4e-12PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Nicoti711004371 (2)ref|XP_009587113.1|1e-78PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 [Nicoti
JMSF043F09Sequence739000933 (2)ref|XP_009793696.1|4e-61PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Nicoti836004371 (2)ref|XP_009587113.1|4e-113PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 [Nicoti

Alignment

This contig is upended


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JMSF043F09+                                                    ATGGAGTGAACCATATCGG
                      ____________________________________________________________
consensus                                                      ATGGAGTGAACCATATCGG
 
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JMSF043F09+           AGAAGTCGCAATCCCACCAGCATTAGTCGAGACATTTCCACCAATTTGACAGCTTCCTTT
                      ____________________________________________________________
consensus             AGAAGTCGCAATCCCACCAGCATTAGTCGAGACATTTCCACCAATTTGACAGCTTCCTTT
 
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JMSF043F09+           AGCCCCTAGATCTTGTCAAATGAAATTATTTTATTCATTGAACCAAGATTGATAATCACC
                      ____________________________________________________________
consensus             AGCCCCTAGATCTTGTCAAATGAAATTATTTTATTCATTGAACCAAGATTGATAATCACC
 
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JMSF043F09+           TCATCAAAAACAGGAACACTCCCTCCCACAAGACCTGTATTTCCACCTTGAGGAACAACA
                      ____________________________________________________________
consensus             TCATCAAAAACAGGAACACTCCCTCCCACAAGACCTGTATTTCCACCTTGAGGAACAACA
 
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JMSF043F09+           GCAAGGCATCTCCTCTGTACTTCTAGGTTGGAGCATAAGCTTACTTGCACCCTTGTATTT
                      ____________________________________________________________
consensus             GCAAGGCATCTCCTCTGTACTTCTAGGTTGGAGCATAAGCTTACTTGCACCCTTGTATTT
 
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JMSF043F09+           TCGCATCCAGTCCATGTTTACAGCATTAAGAGTGTCCTCATCTTCAACCACACCTCTTTC
                      ____________________________________________________________
consensus             TCGCATCCAGTCCATGTTTACAGCATTAAGAGTGTCCTCATCTTCAACCACACCTCTTTC
 
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JMSF043F09+           ACCTAATATCTTCTTGAAATAGCTAATATCATCTGGGTTGATTGTTGAAAATTTTGGGTT
                      ____________________________________________________________
consensus             ACCTAATATCTTCTTGAAATAGCTAATATCATCTGGGTTGATTGTTGAAAATTTTGGGTT
 
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JMSF043F09+           CCTCTGGATCACAGTGGACTCTGAAGAAAAACGTCTAGAGTGGGCACTCCCACTGTTCCA
                      ____________________________________________________________
consensus             CCTCTGGATCACAGTGGACTCTGAAGAAAAACGTCTAGAGTGGGCACTCCCACTGTTCCA
 
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JMSF010N08+                                     AATGACAAAGTGTATGAATGTTTTCTTGGTAATT
JMSF043F09+           ACAGTTTGTACTAAGGGAAGATACTGAATGACAAAGTGTATGAATGTTTTCTTGGTAATT
                      ____________________________________________________________
consensus             ACAGTTTGTACTAAGGGAAGATACTGAATGACAAAGTGTATGAATGTTTTCTTGGTAATT
 
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JMSF010N08+           CGCAACATAAGGATTTAGTGATCTACATGTTTTGTCAAAATGATATATGCAACCTGAAGC
JMSF043F09+           CGCAACATAAGGATTTAGTGATCTACATGTTTTGTCAAAATGATATATGCAACCTGAAGC
                      ____________________________________________________________
consensus             CGCAACATAAGGATTTAGTGATCTACATGTTTTGTCAAAATGATATATGCAACCTGAAGC
 
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JMSF010N08+           TCGGCAGCGAGTAGAATTGAGGTAATTAGGGCTTGATCGACGATCAAATAGTTTCTTCGA
JMSF043F09+           TCGGCAGCGAGTAGAATTGAGGTAATTAGGGCTTGATCGACGATCAAATAGTTTCTTCGA
                      ____________________________________________________________
consensus             TCGGCAGCGAGTAGAATTGAGGTAATTAGGGCTTGATCGACGATCAAATAGTTTCTTCGA
 
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JMSF010N08+           GCAGTAATTCAGTAGGCGAGTGGTAGCTCTCCAGTTCTCCATGCTCTGAACCCTTCTTCC
JMSF043F09+           GCAGTAATTCAGTAGGCGAGTGGTAGCTCTCCAGTTCTCCATGCTCTGAACCCTTCTTCC
                      ____________________________________________________________
consensus             GCAGTAATTCAGTAGGCGAGTGGTAGCTCTCCAGTTCTCCATGCTCTGAACCCTTCTTCC
 
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JMSF010N08+           TGCCAATCTGATCAGAGAAAGCTGTAT                                 
JMSF043F09+           TGCCAATCTGATCAGAGAAAGCTGTATGGAAGCTGGGATGAGGAGATAGTTTCTTAGACC
                      ____________________________________________________________
consensus             TGCCAATCTGATCAGAGAAAGCTGTATGGAAGCTGGGATGAGGAGATAGTTTCTTAGACC