| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF021C22 | Sequence | 722 | 000930 (3) | gb|KDP27265.1| | 6e-78 | hypothetical protein JCGZ_19964 [Jatropha curcas] | 778 | 004313 (3) | emb|CDP02333.1| | 6e-95 | unnamed protein product [Coffea canephora] |
| JMSF033I09 | Sequence | 687 | 000930 (3) | ref|XP_009793206.1| | 7e-109 | PREDICTED: ABC transporter B family member 27-like, partial [Nicotiana sylvestr | 726 | 004313 (3) | emb|CDP02333.1| | 6e-111 | unnamed protein product [Coffea canephora] |
| JMSF043C05 | Sequence | 780 | 000930 (3) | ref|XP_009793206.1| | 3e-120 | PREDICTED: ABC transporter B family member 27-like, partial [Nicotiana sylvestr | 695 | 004313 (3) | dbj|BAJ86187.1| | 4e-126 | predicted protein [Hordeum vulgare subsp. vulgare] |
This contig is upended
. : . : . : . : . : . :
JMSF021C22+ TTCCAATCATTGATGTTGTCACATTCCGTAGAGCTTCTGATAGATTAGT
____________________________________________________________
consensus TTCCAATCATTGATGTTGTCACATTCCGTAGAGCTTCTGATAGATTAGT
. : . : . : . : . : . :
JMSF021C22+ GGTTGCAGCGCTTTTTATGATTTGGGTGTCTTCTGATAGTCTGCTCAGAAGTTCACCGGT
____________________________________________________________
consensus GGTTGCAGCGCTTTTTATGATTTGGGTGTCTTCTGATAGTCTGCTCAGAAGTTCACCGGT
. : . : . : . : . : . :
JMSF021C22+ CCGAGTAACATCATAGAATGCTATTTCCTACAGAAGAGTTAATTGTAAGAATAGACTTTG
____________________________________________________________
consensus CCGAGTAACATCATAGAATGCTATTTCCTACAGAAGAGTTAATTGTAAGAATAGACTTTG
. : . : . : . : . : . :
JMSF021C22+ TGCTGAACTATTAACTTACAGTGAACAATTAGAATTATAATATGAAATCCTCCTTTTAGG
____________________________________________________________
consensus TGCTGAACTATTAACTTACAGTGAACAATTAGAATTATAATATGAAATCCTCCTTTTAGG
. : . : . : . : . : . :
JMSF021C22+ GAGTTTCCTTCATGGTCTTCAAGAAGAGTTTGCTGTATAAGGTGACTGAACAAATTCTTC
JMSF033I09+ TTGCTGTATAAGGTGACTGAACAAATTCTTC
JMSF043C05+ TTGCTGTATAAGGTGACTGAACAAATTCTTC
____________________________________________________________
consensus GAGTTTCCTTCATGGTCTTCAAGAAGAGTTTGCTGTATAAGGTGACTGAACAAATTCTTC
. : . : . : . : . : . :
JMSF021C22+ CTTAGTCGAGCAACAACCCTTTCACTGGCTGAAGAAAATAACCAAGACCGAAGTGCAGTG
JMSF033I09+ CTTAGTCGAGCAACAACCCTTTCACTGGCTGAAGAAAATAACCAAGACCGAAGTGCAGTG
JMSF043C05+ CTTAGTCGAGCAACAACCCTTTCACTGGCTGAAGAAAATAACCAAGACCGAAGTGCAGTG
____________________________________________________________
consensus CTTAGTCGAGCAACAACCCTTTCACTGGCTGAAGAAAATAACCAAGACCGAAGTGCAGTG
. : . : . : . : . : . :
JMSF021C22+ CAAACCGAGCCTATAACAACTATTAAGACAATAGCCAGCACAGTGTTTTTGACTTCATCT
JMSF033I09+ CAAACCGAGCCTATAACAACTATTAAGACAATAGCCAGCACAGTGTTTTTGACTTCATCT
JMSF043C05+ CAAACCGAGCCTATAACAACTATTAAGACAATAGCCAGCACAGTGTTTTTGACTTCATCT
____________________________________________________________
consensus CAAACCGAGCCTATAACAACTATTAAGACAATAGCCAGCACAGTGTTTTTGACTTCATCT
. : . : . : . : . : . :
JMSF021C22+ AATGCTTCAGCTTGCTGCTCAGGAGTCCTCGTGTCTCTTGATACAATGTCAATTATTGTG
JMSF033I09+ AATGCTTCAGCTTGCTGCTCAGGAGTCCTCGTGTCTCTTGATACAATGTCAATTATTGTG
JMSF043C05+ AATGCTTCAGCTTGCTGCTCAGGAGTCCTCGTGTCTCTTGATACAATGTCAATTATTGTG
____________________________________________________________
consensus AATGCTTCAGCTTGCTGCTCAGGAGTCCTCGTGTCTCTTGATACAATGTCAATTATTGTG
. : . : . : . : . : . :
JMSF021C22+ CCACCATATTTTGGTATGAGAAGATTTGAGGTTGATGCTATCAGCAGAGCAACAGTAGCA
JMSF033I09+ CCACCATATTTTGGTATGAGAAGATTTGAGGTTGATGCTATCAGCAGAGCAACAGTAGCA
JMSF043C05+ CCACCATATTTTGGTATGAGAAGATTTGAGGTTGATGCTATCAGCAGAGCAACAGTAGCA
____________________________________________________________
consensus CCACCATATTTTGGTATGAGAAGATTTGAGGTTGATGCTATCAGCAGAGCAACAGTAGCA
. : . : . : . : . : . :
JMSF021C22+ ATAATTATCTTCCCCGCATCTTCCTTTGCTAGAAGGAATATTCTGGAAAACCGAACATTC
JMSF033I09+ ATAATTATCTTCCCCGCATCTTCCTTTGCTAGAAGGAATATTCTGGAAAACCGAACATTC
JMSF043C05+ ATAATTATCTTCCCCGCATCTTCCTTTGCTAGAAGGAATATTCTGGAAAACCGAACATTC
____________________________________________________________
consensus ATAATTATCTTCCCCGCATCTTCCTTTGCTAGAAGGAATATTCTGGAAAACCGAACATTC
. : . : . : . : . : . :
JMSF021C22+ GCAGCCTCTACTGCATTTCCATCCTCTAAGTCTGTCACGGGACCATTCGAGGAACCATCC
JMSF033I09+ GCAGCCTCTACTGCATTTCCATCCTCTAAGTCTGTCACGGGACCATTCGAGGAACCATCC
JMSF043C05+ GCAGCCTCTACTGCATTTCCATCCTCTAAGTCTGTCACGGGACCATTCGAGGAACCATCC
____________________________________________________________
consensus GCAGCCTCTACTGCATTTCCATCCTCTAAGTCTGTCACGGGACCATTCGAGGAACCATCC
. : . : . : . : . : . :
JMSF021C22+ TCACTTGTCTTCTTCTTAGCCTCTTTGTTCAAGAGTGAGACTCGCTCGCTGCCTGTGGAC
JMSF033I09+ TCACTTGTCTTCTTCTTAGCCTCTTTGTTCAAGAGTGAGACTCGCTCGCTGCCTGTGGAC
JMSF043C05+ TCACTTGTCTTCTTCTTAGCCTCTTTGTTCAAGAGTGAGACTCGCTCGCTGCCTGTGGAC
____________________________________________________________
consensus TCACTTGTCTTCTTCTTAGCCTCTTTGTTCAAGAGTGAGACTCGCTCGCTGCCTGTGGAC
. : . : . : . : . : . :
JMSF021C22+ ATGATCGATCGT
JMSF033I09+ ATGATCGATCGTGTCGTCCAATCCAAATGTTGTTTCTTCCCCATTTAACAGAAGATAATT
JMSF043C05+ ATGATCGATCGTGTCGTCCAATCCAAATGTTGTTTCTTCCCCATTTAACAGAAGATAATT
____________________________________________________________
consensus ATGATCGATCGTGTCGTCCAATCCAAATGTTGTTTCTTCCCCATTTAACAGAAGATAATT
. : . : . : . : . : . :
JMSF033I09+ CTCTGAGAAAATGAAGACATTGACAGAGAATATAAGCTAATAAGCTACTACAAGTC
JMSF043C05+ CTCTGAGAAAATGAAGACATTGACAGAGAATATAAGCTAATAAGCTACTACAAGTCTACC
____________________________________________________________
consensus CTCTGAGAAAATGAAGACATTGACAGAGAATATAAGCTAATAAGCTACTACAAGTCTACC