| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035F16 | Sequence | 495 | 000928 (3) | ref|XP_009624799.1| | 2e-18 | PREDICTED: outer envelope protein 64, mitochondrial [Nicotiana tomentosiformis] | 229 | 012730 (3) | |||
| JMSF042O10 | Sequence | 747 | 000928 (3) | ref|XP_009624799.1| | 6e-50 | PREDICTED: outer envelope protein 64, mitochondrial [Nicotiana tomentosiformis] | 561 | 012730 (3) | ref|XP_009624799.1| | 4e-07 | PREDICTED: outer envelope protein 64, mitochondrial [Nicotiana tomentosiformis] |
| JMSF049B23 | Sequence | 687 | 000928 (3) | ref|XP_009776046.1| | 5e-37 | PREDICTED: outer envelope protein 64, mitochondrial [Nicotiana sylvestris] | 701 | 012730 (3) | ref|XP_009624799.1| | 1e-80 | PREDICTED: outer envelope protein 64, mitochondrial [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF042O10+ TGGTATCAGTAGCAAGAGCAAAGTCAAC
____________________________________________________________
consensus TGGTATCAGTAGCAAGAGCAAAGTCAAC
. : . : . : . : . : . :
JMSF049B23+ CTAGATGAGCCTCCAGGAACATGAAATGG
JMSF042O10+ AAGATTGGATGCAACAGCAACCGCTGAACCACTAGATGAGCCTCCAGGAACATGAAATGG
____________________________________________________________
consensus AAGATTGGATGCAACAGCAACCGCTGAACCACTAGATGAGCCTCCAGGAACATGAAATGG
. : . : . : . : . : . :
JMSF049B23+ CAATTTGGGGTTAGTTGGTGTTCCATAGTGCACATTTCTTCCAGTGATCCCCAAACCAAG
JMSF042O10+ CAATTTGGGGTTAGTTGGTGTTCCATAGTGCACATTTCTTCCAGTGATCCCCAAACCAAG
____________________________________________________________
consensus CAATTTGGGGTTAGTTGGTGTTCCATAGTGCACATTTCTTCCAGTGATCCCCAAACCAAG
. : . : . : . : . : . :
JMSF049B23+ TTCATCCATAATCGTCTTGCCAATGCAAGTAGCTCCACTCTTCAGTAGAGCGTAGACTAC
JMSF042O10+ TTCATCCATAATCGTCTTGCCAATGCAAGTAGCTCCACTCTTCAGTAGAGCGTAGACTAC
____________________________________________________________
consensus TTCATCCATAATCGTCTTGCCAATGCAAGTAGCTCCACTCTTCAGTAGAGCGTAGACTAC
. : . : . : . : . : . :
JMSF049B23+ CGCCGCCGTCTCTGCAGCCGCTTCATGTGTCCGTTTCCACTCTGGGCTCCCAAGCCCCGT
JMFF035F16+ CTGGGCTCCCAAGCCCCGT
JMSF042O10+ CGCCGCCGTCTCTGCAGCCGCTTCATGTGTCCGTTTCCACTCTGGGCTCCCAAGCCCCGT
____________________________________________________________
consensus CGCCGCCGTCTCTGCAGCCGCTTCATGTGTCCGTTTCCACTCTGGGCTCCCAAGCCCCGT
. : . : . : . : . : . :
JMSF049B23+ TACGTACCCCTTCACATCAATATTGTCTTTGATGGCAAACGTGAGGCCGGCGAGGAGGAG
JMFF035F16+ TACGTACCCCTTCACATCAATATTGTCTTTGATGGCAAACGTGAGGCCGGCGAGGAGGAG
JMSF042O10+ TACGTACCCCTTCACATCAATATTGTCTTTGATGGCAAACGTGAGGCCGGCGAGGAGGAG
____________________________________________________________
consensus TACGTACCCCTTCACATCAATATTGTCTTTGATGGCAAACGTGAGGCCGGCGAGGAGGAG
. : . : . : . : . : . :
JMSF049B23+ CGGAGCAGCGGGAGGAGGGGGTTGAGGAAAAAGGAAGCAACTCGAAACGCTCGATGAAGG
JMFF035F16+ CGGAGCAGCGGGAGGAGGGGGTTGAGG-AAAAGGAAGCAACTCGAAACGCTCGATGAAGG
JMSF042O10+ CGGAGCAGCGGGAGGAGGGGGTTGAGG-AAAAGGAAGCAACTCGAAACGCTCGATGAAGG
____________________________________________________________
consensus CGGAGCAGCGGGAGGAGGGGGTTGAGG-AAAAGGAAGCAACTCGAAACGCTCGATGAAGG
. : . : . : . : . : . :
JMSF049B23+ CCCCAAAATCTTCCTTAATCGCGTCACTGGCACTCAGCCGGCGGCGGCGGTGGACCTCGG
JMFF035F16+ CCCCAAAATCTTCCTTAATCGCGTCACTGGCACTCAGCCGGCGGCGGCGGTGGACCTCGG
JMSF042O10+ CCCCAAAATCTTCCTTAATCGCGTCACTGGCACTCAGCCGGCGGCGGCGGTGGACCTCGG
____________________________________________________________
consensus CCCCAAAATCTTCCTTAATCGCGTCACTGGCACTCAGCCGGCGGCGGCGGTGGACCTCGG
. : . : . : . : . : . :
JMSF049B23+ CTAGAATCACGATCCCGGCGACTCCAACGCCTATCACCACCCAAAGCTTGGGATTCGAGG
JMFF035F16+ CTAGAATCACGATCCCGGCGACTCCAACGCCTATCACCACCCAAAGCTTGGGATTCGAGG
JMSF042O10+ CTAGAATCACGATCCCGGCGACTCCAACGCCTATCACCACCCAAAGCTTGGGATTCGAGG
____________________________________________________________
consensus CTAGAATCACGATCCCGGCGACTCCAACGCCTATCACCACCCAAAGCTTGGGATTCGAGG
. : . : . : . : . : . :
JMSF049B23+ CGCTGAGCTTCGACAGCTTTGTCATGGCCGGAAATGTCCGCCGGTTGGTGGGCTAAATTT
JMFF035F16+ CGCTGAGCTTCGACAGCTTTGTCATGGCCGGAAATGTCCGCCGGTTGGTGGGCTAAATTT
JMSF042O10+ CGCTGAGCTTCGACAGCTTTGTCATGGCCGGAAATGTCCGCCGGTTGGTGGGCTAAATTT
____________________________________________________________
consensus CGCTGAGCTTCGACAGCTTTGTCATGGCCGGAAATGTCCGCCGGTTGGTGGGCTAAATTT
. : . : . : . : . : . :
JMSF049B23+ AGGGTTTTTGAAGGGTTTAAGAGAGTTTTCTAAAACTCAGAAAGGGGATTGCAATTTGCA
JMFF035F16+ AGGGTTTTTGAAGGGTTTAAGAGAGTTTTCTAAAACTCAGAAAGGGGATTGCAATTTGCA
JMSF042O10+ AGGGTTTTTGAAGGGTTTAAGAGAGTTTTCTAAAACTCAGAAAGGGGATTGCAATTTGCA
____________________________________________________________
consensus AGGGTTTTTGAAGGGTTTAAGAGAGTTTTCTAAAACTCAGAAAGGGGATTGCAATTTGCA
. : . : . : . : . : . :
JMSF049B23+ ACCTCGCAACAGTGTAAACCATCAAAGGATGCGCGCGCGTTGTCTAGACTCGATAAACTT
JMFF035F16+ ACCTCGCAACAGTGTAAACCATCAAAGGATGCGCGCGCGTTGTCTAGACTCGATAAACTT
JMSF042O10+ ACCTCGCAACAGTGTAAACCATCAAAGGATGCGCGCGCGTTGTCTAGACTCGATAAACTT
____________________________________________________________
consensus ACCTCGCAACAGTGTAAACCATCAAAGGATGCGCGCGCGTTGTCTAGACTCGATAAACTT
. : . : . : . : . : . :
JMSF049B23+ CCTCCTTTCTCCCCACACCGAATCACAATGAAAAGTTGGCAAAAACCAAAAGATCAT
JMFF035F16+ CCTCCTTTCTCCCCACACCGAATCACAATGAAAAGTTGGCAAAAACCAAAAGATCAT
JMSF042O10+ CCTCCTTTCTCCCCACACCGAATCACAATGAAAAGTTGGCAAAAACCAAAAGATCATACC
____________________________________________________________
consensus CCTCCTTTCTCCCCACACCGAATCACAATGAAAAGTTGGCAAAAACCAAAAGATCATACC