Contig 000927:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042N11Sequence814000927 (2)ref|XP_009793835.1|2e-22PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Nicotiana sylvestris]
JMSF046C15Sequence759000927 (2)ref|XP_009793835.1|2e-21PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Nicotiana sylvestris]717002911 (11)emb|CDP06107.1|2e-112unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046C15+ ACCAAATGCTGATAGTCACTGGCATTTA
JMSF042N11+ TTAGGAACCAAATGCTGATAGTCACTGGCATTTA
                      ____________________________________________________________
consensus TTAGGAACCAAATGCTGATAGTCACTGGCATTTA
 
. : . : . : . : . : . :
JMSF046C15+ ACAGAGCTCTGCAGTTTATTCCAGGGCAAATGACTTCAACCATGTTTGCTTCAACCCTTG
JMSF042N11+ ACAGAGCTNTGCAGTTTATTCCAGGGCAAATGACTTCAACCATGTTTGCTTCAACCCTTG
                      ____________________________________________________________
consensus ACAGAGCTCTGCAGTTTATTCCAGGGCAAATGACTTCAACCATGTTTGCTTCAACCCTTG
 
. : . : . : . : . : . :
JMSF046C15+ CGATGATATGCTTGCTCATGCACTCAGAACAGAATGAGTGAGAACATTCGTCATGTTCTA
JMSF042N11+ CGATGATATGCTTGCTCATGCACTCAGAACAGAATGAGTGAGAACATTCGTCATGTTCTA
                      ____________________________________________________________
consensus CGATGATATGCTTGCTCATGCACTCAGAACAGAATGAGTGAGAACATTCGTCATGTTCTA
 
. : . : . : . : . : . :
JMSF046C15+ TCATCTGCCATTTTCCTTTGTCCTCTAAACAAATCTCGCAGAAGCTTTTAGGAAAGGGTC
JMSF042N11+ TCATCTGCCATTTTCCTTTGTCCTCTAAACAAATCTCGCAGAAGCTTTTAGGAAAGGGTC
                      ____________________________________________________________
consensus TCATCTGCCATTTTCCTTTGTCCTCTAAACAAATCTCGCAGAAGCTTTTAGGAAAGGGTC
 
. : . : . : . : . : . :
JMSF046C15+ CTCCCTGGACAGATGAAGATGCCTCATTAACAGTCGGAGCAGTAGAAAGCAAATCCAATA
JMSF042N11+ CTCCCTGGACAGATGAAGATGCCTCATTAACAGTCGGAGCAGTAGAAAGCAAATCCAATA
                      ____________________________________________________________
consensus CTCCCTGGACAGATGAAGATGCCTCATTAACAGTCGGAGCAGTAGAAAGCAAATCCAATA
 
. : . : . : . : . : . :
JMSF046C15+ CAGATGAAGATGCATCATTAACAGTCGAAGCAGTAGAAAGCAAAGCCAATACAGATGAAG
JMSF042N11+ CAGATGAAGATGCATCATTAACAGTCGAAGCAGTAGAAAGCAAAGCCAATACAGATGAAG
                      ____________________________________________________________
consensus CAGATGAAGATGCATCATTAACAGTCGAAGCAGTAGAAAGCAAAGCCAATACAGATGAAG
 
. : . : . : . : . : . :
JMSF046C15+ ATGCATCATTAATAGTTGGAGCAGTAAAAAGCGAAGCCAATAAAGTTTCTTCAAACTGCA
JMSF042N11+ ATGCATCATTAATAGTTGGAGCAGTAAAAAGCGAAGCCAATAAAGTTTCTTCAAACTGCA
                      ____________________________________________________________
consensus ATGCATCATTAATAGTTGGAGCAGTAAAAAGCGAAGCCAATAAAGTTTCTTCAAACTGCA
 
. : . : . : . : . : . :
JMSF046C15+ GATCTTCAGCAAGTGCAGCATCTAGATCCGGAACATGAACCTTCCTGGTTTTTTCTACTT
JMSF042N11+ GATCTTCAGCAAGTGCAGCATCTAGATCCGGAACATGAACCTTCCTGGTTTTTTCTACTT
                      ____________________________________________________________
consensus GATCTTCAGCAAGTGCAGCATCTAGATCCGGAACATGAACCTTCCTGGTTTTTTCTACTT
 
. : . : . : . : . : . :
JMSF046C15+ CAGTGGAGAAATCGCGGCGAACTCCAAGGCACTTGCTCTTCATCTTCTGCTTAGTCGTCT
JMSF042N11+ CAGTGGAGAAATCGCGGCGAACTCCAAGGCACTTGCTCTTCATCTTCTGCTTAGTCGTCT
                      ____________________________________________________________
consensus CAGTGGAGAAATCGCGGCGAACTCCAAGGCACTTGCTCTTCATCTTCTGCTTAGTCGTCT
 
. : . : . : . : . : . :
JMSF046C15+ GCTTCAAGTCACGCACCATCTCGAGCAAGAGGTGAACGGAGATGATGACCGCTGATACAC
JMSF042N11+ GCTTCAAGTCACGCACCATCTCGAGCAAGAGGTGAACGGAGATGATGACCGCTGATACAC
                      ____________________________________________________________
consensus GCTTCAAGTCACGCACCATCTCGAGCAAGAGGTGAACGGAGATGATGACCGCTGATACAC
 
. : . : . : . : . : . :
JMSF046C15+ CTACGAAGGAAATGATGAGGTCATGGAAATCCAGGGGGGCGATGTAGGCAGTCCACAATT
JMSF042N11+ CTACGAAGGAAATGATGAGGTCATGGAAATCCAGGGGGGCGATGTAGGCAGTCCACAATT
                      ____________________________________________________________
consensus CTACGAAGGAAATGATGAGGTCATGGAAATCCAGGGGGGCGATGTAGGCAGTCCACAATT
 
. : . : . : . : . : . :
JMSF046C15+ CATTGAAGAGAGCTTGAGCAGTCGGCGAAATTGAATTGGAGATATTGGCTAAAAACGATC
JMSF042N11+ CATTGAAGAGAGCTTGAGCAGTCGGCGAAATTGAATTGGAGATATTGGCTAAAAACGATC
                      ____________________________________________________________
consensus CATTGAAGAGAGCTTGAGCAGTCGGCGAAATTGAATTGGAGATATTGGCTAAAAACGATC
 
. : . : . : . : . : . :
JMSF046C15+ CCATGAACGTACGAATGTACGATCCGGAAGAAGAAACAAGGCGACCCGAAGAAAGGGGAA
JMSF042N11+ CCATGAACGTACGAATGTACGATCCGGAAGAAGAAACAAGGCGACCCGAAGAAAGGGGAA
                      ____________________________________________________________
consensus CCATGAACGTACGAATGTACGATCCGGAAGAAGAAACAAGGCGACCCGAAGAAAGGGGAA
 
. : . : . : . : . : . :
JMSF046C15+ ATTGTTTT
JMSF042N11+ ATTGTTTTAACTGAATTTCATAGTATGATGAAGTTGGAAATTGGAATCCTCGGCACCGCC
                      ____________________________________________________________
consensus ATTGTTTTAACTGAATTTCATAGTATGATGAAGTTGGAAATTGGAATCCTCGGCACCGCC