| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034N05 | Sequence | 568 | 000925 (5) | ref|XP_009589996.1| | 1e-28 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 752 | 012754 (5) | ref|XP_009341654.1| | 2e-91 | PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri] |
| JMSF022G20 | Sequence | 666 | 000925 (5) | ref|XP_009589996.1| | 3e-40 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 779 | 012754 (5) | ref|XP_006350341.1| | 1e-93 | PREDICTED: protein TIC 40, chloroplastic-like [Solanum tuberosum] |
| JMSF035E20 | Sequence | 651 | 000925 (5) | ref|XP_009589996.1| | 3e-41 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 719 | 012754 (5) | ref|XP_009341654.1| | 2e-92 | PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri] |
| JMSF042M01 | Sequence | 772 | 000925 (5) | ref|XP_009589996.1| | 2e-40 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 735 | 012754 (5) | ref|XP_009341654.1| | 6e-91 | PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri] |
| JMSF046O19 | Sequence | 756 | 000925 (5) | ref|XP_009589996.1| | 2e-40 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 702 | 012754 (5) | ref|XP_011074953.1| | 5e-50 | PREDICTED: protein TIC 40, chloroplastic-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF046O19+ ACAGAGGAAGGCGATGGGG
____________________________________________________________
consensus ACAGAGGAAGGCGATGGGG
. : . : . : . : . : . :
JMSF046O19+ TAGCTTCACTAGACGCAGTAGGGTATGAAGGAAACGAGCTAGCTGGACCTGAGGTTGGTG
JMSF042M01+ CTAGACGCAGTAGGGTATGAAGGAAACGAGCTAGCTGGACCTGAGGTTGGTG
____________________________________________________________
consensus TAGCTTCACTAGACGCAGTAGGGTATGAAGGAAACGAGCTAGCTGGACCTGAGGTTGGTG
. : . : . : . : . : . :
JMSF035E20+ AAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
JMSF046O19+ GCGGTGGTGGTGGAAAAGGGAAAGGGAAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
JMSF022G20+ AAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
JMSF042M01+ GCGGTGGTGGTGGAAAAGGGAAAGGGAAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
____________________________________________________________
consensus GCGGTGGTGGTGGAAAAGGGAAAGGGAAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
. : . : . : . : . : . :
JMSF035E20+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
JMSF046O19+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
JMSF022G20+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCACTGCAT
JMSF042M01+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
____________________________________________________________
consensus ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
. : . : . : . : . : . :
JMSF035E20+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
JMSF046O19+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
JMSF022G20+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
JMSF042M01+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
____________________________________________________________
consensus AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
. : . : . : . : . : . :
JMSF035E20+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
JMSF046O19+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
JMSF022G20+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
JMSF042M01+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
____________________________________________________________
consensus TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
. : . : . : . : . : . :
JMSF035E20+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMSF046O19+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMFF034N05+ CTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMSF022G20+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMSF042M01+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
____________________________________________________________
consensus CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
. : . : . : . : . : . :
JMSF035E20+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMSF046O19+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMFF034N05+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMSF022G20+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMSF042M01+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
____________________________________________________________
consensus GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
. : . : . : . : . : . :
JMSF035E20+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMSF046O19+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMFF034N05+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMSF022G20+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMSF042M01+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
____________________________________________________________
consensus AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
. : . : . : . : . : . :
JMSF035E20+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMSF046O19+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMFF034N05+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMSF022G20+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMSF042M01+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
____________________________________________________________
consensus GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
. : . : . : . : . : . :
JMSF035E20+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMSF046O19+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMFF034N05+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMSF022G20+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMSF042M01+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAGACAAGTTTTTTAAA
____________________________________________________________
consensus AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
. : . : . : . : . : . :
JMSF035E20+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMSF046O19+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMFF034N05+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMSF022G20+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMSF042M01+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
____________________________________________________________
consensus AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
. : . : . : . : . : . :
JMSF035E20+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMSF046O19+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMFF034N05+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMSF022G20+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMSF042M01+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
____________________________________________________________
consensus GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
. : . : . : . : . : . :
JMSF035E20+ GACACTAAACTACTG
JMSF046O19+ GACACTAAACTACTGT
JMFF034N05+ GACACTAAACTACTGT
JMSF022G20+ GACACTAAACTACTGTGATATC
JMSF042M01+ GACACTAAACTACTGTGATATCGGCAGCAAGAACTCGAGAAGATGGAGTGTTGAAGATTC
____________________________________________________________
consensus GACACTAAACTACTGTGATATCGGCAGCAAGAACTCGAGAAGATGGAGTGTTGAAGATTC