Contig 000921:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D20Sequence580000921 (5)ref|XP_008373693.1|3e-102PREDICTED: AP-2 complex subunit mu-like [Malus domestica]702004058 (4)dbj|BAH20421.1|7e-72AT5G46630 [Arabidopsis thaliana]
JMFF032H06Sequence576000921 (5)ref|XP_008373693.1|3e-101PREDICTED: AP-2 complex subunit mu-like [Malus domestica]799004058 (4)ref|XP_011070241.1|2e-88PREDICTED: AP-2 complex subunit mu-like [Sesamum indicum]
JMFN019F13Sequence601000921 (5)gb|KDO51121.1|7e-130hypothetical protein CISIN_1g013671mg [Citrus sinensis]
JMSF042F12Sequence781000921 (5)gb|KDO51121.1|7e-158hypothetical protein CISIN_1g013671mg [Citrus sinensis]700004058 (4)dbj|BAH20421.1|1e-76AT5G46630 [Arabidopsis thaliana]
JMSF043P18Sequence686000921 (5)gb|KDO51121.1|1e-120hypothetical protein CISIN_1g013671mg [Citrus sinensis]560004058 (4)ref|XP_009377081.1|4e-42PREDICTED: LOW QUALITY PROTEIN: AP-2 complex subunit mu [Pyrus x bretschneideri

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN019F13+ CAGTAA
                      ____________________________________________________________
consensus CAGTAA
 
. : . : . : . : . : . :
JMFN019F13+ TACGATACTTCATCAGTTCAATTCACCATCTGGGGAACAAAGCTGACAGTCTTCTCTGAG
                      ____________________________________________________________
consensus TACGATACTTCATCAGTTCAATTCACCATCTGGGGAACAAAGCTGACAGTCTTCTCTGAG
 
. : . : . : . : . : . :
JMFN019F13+ TTGAATCTTGTCAAATTTACACACTGATGGAAAGTGACATCATCAAGCTCAATAGTTTTT
                      ____________________________________________________________
consensus TTGAATCTTGTCAAATTTACACACTGATGGAAAGTGACATCATCAAGCTCAATAGTTTTT
 
. : . : . : . : . : . :
JMFN019F13+ CCACTCTTAGTTGGGCGGGATTTGAGCTGCGACTCTTTCTCAAGGCCAATTTTATCATTT
JMSF042F12+ T
                      ____________________________________________________________
consensus CCACTCTTAGTTGGGCGGGATTTGAGCTGCGACTCTTTCTCAAGGCCAATTTTATCATTT
 
. : . : . : . : . : . :
JMFN019F13+ AAGCCCAACTTCAGATCAGGCATCCCGGAAAGGAAACACTTCATGAGGACTTTTCCAGTA
JMSF042F12+ AAGCCCAACTTCAGATCAGGCATCCCGGAAAGGAAACACTTCATGAGGACTTTTCCAGTA
                      ____________________________________________________________
consensus AAGCCCAACTTCAGATCAGGCATCCCGGAAAGGAAACACTTCATGAGGACTTTTCCAGTA
 
. : . : . : . : . : . :
JMFN019F13+ ACATCACAACGTAAAACACTACCTTTAGAGGACATGAGAAGATTGACACTTTCCACAATA
JMSF042F12+ ACATCACAACGTAAAACACTACCTTTAGAGGACATGAGAAGATTGACACTTTCCACAATA
                      ____________________________________________________________
consensus ACATCACAACGTAAAACACTACCTTTAGAGGACATGAGAAGATTGACACTTTCCACAATA
 
. : . : . : . : . : . :
JMFN019F13+ TCCAGAAACACCTCATTCTTCTTGTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
JMSF043P18+ GTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
JMSF042F12+ TCCAGAAACACCTCATTCTTCTTGTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
                      ____________________________________________________________
consensus TCCAGAAACACCTCATTCTTCTTGTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
 
. : . : . : . : . : . :
JMFN019F13+ GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
JMSF043P18+ GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
JMFF001D20+ ACAGGTTTTGACGAAAATGGGGAG
JMFF032H06+ GTTTTGACGAAAATGGGGAG
JMSF042F12+ GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
                      ____________________________________________________________
consensus GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
 
. : . : . : . : . : . :
JMFN019F13+ CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMSF043P18+ CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMFF001D20+ CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMFF032H06+ CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMSF042F12+ CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
                      ____________________________________________________________
consensus CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
 
. : . : . : . : . : . :
JMFN019F13+ CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMSF043P18+ CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMFF001D20+ CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMFF032H06+ CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMSF042F12+ CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
                      ____________________________________________________________
consensus CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
 
. : . : . : . : . : . :
JMFN019F13+ TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAA
JMSF043P18+ TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
JMFF001D20+ TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
JMFF032H06+ TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
JMSF042F12+ TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
                      ____________________________________________________________
consensus TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
 
. : . : . : . : . : . :
JMSF043P18+ TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
JMFF001D20+ TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
JMFF032H06+ TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
JMSF042F12+ TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
                      ____________________________________________________________
consensus TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
 
. : . : . : . : . : . :
JMSF043P18+ ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
JMFF001D20+ ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
JMFF032H06+ ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
JMSF042F12+ ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
                      ____________________________________________________________
consensus ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
 
. : . : . : . : . : . :
JMSF043P18+ TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
JMFF001D20+ TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
JMFF032H06+ TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
JMSF042F12+ TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
                      ____________________________________________________________
consensus TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
 
. : . : . : . : . : . :
JMSF043P18+ TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
JMFF001D20+ TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
JMFF032H06+ TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
JMSF042F12+ TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
                      ____________________________________________________________
consensus TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
 
. : . : . : . : . : . :
JMSF043P18+ ACGGGCATGGCTGCA
JMFF001D20+ ACGGGCATGGCTGCA
JMFF032H06+ ACGGGCATGGCTGCA
JMSF042F12+ ACGGGCATGGCTGCAACCCAGTAGATCTGCCTCCAGATTAATCCGAATAGACTGGATCGG
                      ____________________________________________________________
consensus ACGGGCATGGCTGCAACCCAGTAGATCTGCCTCCAGATTAATCCGAATAGACTGGATCGG
 
. : . : . : . : . : . :
JMSF042F12+ GTCGGATCTACAGTTACAGACAGAGCGGAATCGAGGAATGAGGAATGAGGTTTGAGAGCC
                      ____________________________________________________________
consensus GTCGGATCTACAGTTACAGACAGAGCGGAATCGAGGAATGAGGAATGAGGTTTGAGAGCC