Contig 000921:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D20Sequence580000921 (5)ref|XP_008373693.1|3e-102PREDICTED: AP-2 complex subunit mu-like [Malus domestica]702004058 (4)dbj|BAH20421.1|7e-72AT5G46630 [Arabidopsis thaliana]
JMFF032H06Sequence576000921 (5)ref|XP_008373693.1|3e-101PREDICTED: AP-2 complex subunit mu-like [Malus domestica]799004058 (4)ref|XP_011070241.1|2e-88PREDICTED: AP-2 complex subunit mu-like [Sesamum indicum]
JMFN019F13Sequence601000921 (5)gb|KDO51121.1|7e-130hypothetical protein CISIN_1g013671mg [Citrus sinensis]
JMSF042F12Sequence781000921 (5)gb|KDO51121.1|7e-158hypothetical protein CISIN_1g013671mg [Citrus sinensis]700004058 (4)dbj|BAH20421.1|1e-76AT5G46630 [Arabidopsis thaliana]
JMSF043P18Sequence686000921 (5)gb|KDO51121.1|1e-120hypothetical protein CISIN_1g013671mg [Citrus sinensis]560004058 (4)ref|XP_009377081.1|4e-42PREDICTED: LOW QUALITY PROTEIN: AP-2 complex subunit mu [Pyrus x bretschneideri

Alignment

This contig is upended


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JMFN019F13+                                                                 CAGTAA
                      ____________________________________________________________
consensus                                                                   CAGTAA
 
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JMFN019F13+           TACGATACTTCATCAGTTCAATTCACCATCTGGGGAACAAAGCTGACAGTCTTCTCTGAG
                      ____________________________________________________________
consensus             TACGATACTTCATCAGTTCAATTCACCATCTGGGGAACAAAGCTGACAGTCTTCTCTGAG
 
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JMFN019F13+           TTGAATCTTGTCAAATTTACACACTGATGGAAAGTGACATCATCAAGCTCAATAGTTTTT
                      ____________________________________________________________
consensus             TTGAATCTTGTCAAATTTACACACTGATGGAAAGTGACATCATCAAGCTCAATAGTTTTT
 
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JMFN019F13+           CCACTCTTAGTTGGGCGGGATTTGAGCTGCGACTCTTTCTCAAGGCCAATTTTATCATTT
JMSF042F12+                                                                      T
                      ____________________________________________________________
consensus             CCACTCTTAGTTGGGCGGGATTTGAGCTGCGACTCTTTCTCAAGGCCAATTTTATCATTT
 
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JMFN019F13+           AAGCCCAACTTCAGATCAGGCATCCCGGAAAGGAAACACTTCATGAGGACTTTTCCAGTA
JMSF042F12+           AAGCCCAACTTCAGATCAGGCATCCCGGAAAGGAAACACTTCATGAGGACTTTTCCAGTA
                      ____________________________________________________________
consensus             AAGCCCAACTTCAGATCAGGCATCCCGGAAAGGAAACACTTCATGAGGACTTTTCCAGTA
 
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JMFN019F13+           ACATCACAACGTAAAACACTACCTTTAGAGGACATGAGAAGATTGACACTTTCCACAATA
JMSF042F12+           ACATCACAACGTAAAACACTACCTTTAGAGGACATGAGAAGATTGACACTTTCCACAATA
                      ____________________________________________________________
consensus             ACATCACAACGTAAAACACTACCTTTAGAGGACATGAGAAGATTGACACTTTCCACAATA
 
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JMFN019F13+           TCCAGAAACACCTCATTCTTCTTGTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
JMSF043P18+                                  GTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
JMSF042F12+           TCCAGAAACACCTCATTCTTCTTGTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
                      ____________________________________________________________
consensus             TCCAGAAACACCTCATTCTTCTTGTATACAAGACCCTCCCTCCGCCAGCCAACAGCACCA
 
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JMFN019F13+           GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
JMSF043P18+           GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
JMFF001D20+                                               ACAGGTTTTGACGAAAATGGGGAG
JMFF032H06+                                                   GTTTTGACGAAAATGGGGAG
JMSF042F12+           GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
                      ____________________________________________________________
consensus             GTGACTTGTAATGTTGCATTAGGAACTGGTCTATCAACAGGTTTTGACGAAAATGGGGAG
 
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JMFN019F13+           CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMSF043P18+           CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMFF001D20+           CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMFF032H06+           CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
JMSF042F12+           CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
                      ____________________________________________________________
consensus             CGCACACCTTCTTGAGTAATGTAGAGCTTCAAAATTTCAGGCGAAAGATTTTGGGGGTAA
 
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JMFN019F13+           CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMSF043P18+           CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMFF001D20+           CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMFF032H06+           CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
JMSF042F12+           CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
                      ____________________________________________________________
consensus             CCAAAGTCCATAATTTCATCCAAAAGTTCATAAATTAAAACAAAATTATTGCGAATGGCA
 
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JMFN019F13+           TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAA     
JMSF043P18+           TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
JMFF001D20+           TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
JMFF032H06+           TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
JMSF042F12+           TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
                      ____________________________________________________________
consensus             TCTTCATCAAAAGCTCCACCAAAATATGATTTGAACAAGGCAACTGCCTCAACAACAAAC
 
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JMSF043P18+           TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
JMFF001D20+           TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
JMFF032H06+           TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
JMSF042F12+           TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
                      ____________________________________________________________
consensus             TTGAAAGCACAAGCAACATTAGCATTGGTGCTGACAACAATCACTATATAGACATTACTA
 
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JMSF043P18+           ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
JMFF001D20+           ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
JMFF032H06+           ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
JMSF042F12+           ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
                      ____________________________________________________________
consensus             ATTCTCATATACAAGAAAGAGCAGCCTCCTATCTGTCTCACAGGACATGTCCCCAGTTCT
 
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JMSF043P18+           TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
JMFF001D20+           TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
JMFF032H06+           TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
JMSF042F12+           TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
                      ____________________________________________________________
consensus             TTTGTCTGCATTATATGTGTACGGAAGGCATCTACCATATTTCCCCCGACGTCATCGCGG
 
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JMSF043P18+           TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
JMFF001D20+           TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
JMFF032H06+           TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
JMSF042F12+           TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
                      ____________________________________________________________
consensus             TAGAGGCGGTTAATGAGGACGTCGCCCCGGAGATTTAAGAAGTATATAGCAGAAGCTGCC
 
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JMSF043P18+           ACGGGCATGGCTGCA                                             
JMFF001D20+           ACGGGCATGGCTGCA                                             
JMFF032H06+           ACGGGCATGGCTGCA                                             
JMSF042F12+           ACGGGCATGGCTGCAACCCAGTAGATCTGCCTCCAGATTAATCCGAATAGACTGGATCGG
                      ____________________________________________________________
consensus             ACGGGCATGGCTGCAACCCAGTAGATCTGCCTCCAGATTAATCCGAATAGACTGGATCGG
 
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JMSF042F12+           GTCGGATCTACAGTTACAGACAGAGCGGAATCGAGGAATGAGGAATGAGGTTTGAGAGCC
                      ____________________________________________________________
consensus             GTCGGATCTACAGTTACAGACAGAGCGGAATCGAGGAATGAGGAATGAGGTTTGAGAGCC