Contig 000918:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014A12Sequence460000918 (2)ref|XP_011078871.1|2e-18PREDICTED: pentatricopeptide repeat-containing protein At5g24830 isoform X2 [Se734012557 (2)ref|XP_007156131.1|3e-06hypothetical protein PHAVU_003G261200g [Phaseolus vulgaris] gb|ESW28125.1| hypot
JMSF042C16Sequence809000918 (2)emb|CDP14455.1|2e-57unnamed protein product [Coffea canephora]736012557 (2)ref|XP_007156131.1|4e-07hypothetical protein PHAVU_003G261200g [Phaseolus vulgaris] gb|ESW28125.1| hypot

Alignment

This contig is upended


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JMSF042C16+                                        TCCGGGGTAATACCATGGTTAGACATTGTTG
                      ____________________________________________________________
consensus                                          TCCGGGGTAATACCATGGTTAGACATTGTTG
 
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JMSF042C16+           AAAATATATCTAGAGCTCTATCCACATTATTATTACGGCAATAACCTTTAATTAAGGTAT
                      ____________________________________________________________
consensus             AAAATATATCTAGAGCTCTATCCACATTATTATTACGGCAATAACCTTTAATTAAGGTAT
 
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JMSF042C16+           TATATGTAGCACAACTAGGAGTAGGGCCCCTGTATAGCATCTCTTTGATAAGCCACTCTG
                      ____________________________________________________________
consensus             TATATGTAGCACAACTAGGAGTAGGGCCCCTGTATAGCATCTCTTTGATAAGCCACTCTG
 
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JMSF042C16+           CCTTCTCCAAATCACCAGCCTTGCTTAGTCCGTTGATAAGATAGTTGTACGTAAATACAT
                      ____________________________________________________________
consensus             CCTTCTCCAAATCACCAGCCTTGCTTAGTCCGTTGATAAGATAGTTGTACGTAAATACAT
 
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JMSF042C16+           CAGGACTGACAAATTTATGTATCATCTTGCTCCAAAGAGACAAAGCAGGCCCCAGTTTAC
                      ____________________________________________________________
consensus             CAGGACTGACAAATTTATGTATCATCTTGCTCCAAAGAGACAAAGCAGGCCCCAGTTTAC
 
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JMSF014A12+                   CACAATGCTCTGATGATGTGTTCGTCATTACGCAACTTTGACTTTGATATGC
JMSF042C16+           CTTCCTTGCACAATGCTCTGATGATGTGTTCGTCATTACGCAACTTTGACTTTGATATGC
                      ____________________________________________________________
consensus             CTTCCTTGCACAATGCTCTGATGATGTGTTCGTCATTACGCAACTTTGACTTTGATATGC
 
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JMSF014A12+           TATCAAAGCCAATGCAAGTCCATGATTTTCTTTCCCTCATAGTCTTTAATCGGTCCAACA
JMSF042C16+           TATCAAAGCCAATGCAAGTCCATGATTTTCTTTCCCTCATAGTCTTTAATCGGTCCAACA
                      ____________________________________________________________
consensus             TATCAAAGCCAATGCAAGTCCATGATTTTCTTTCCCTCATAGTCTTTAATCGGTCCAACA
 
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JMSF014A12+           TGTCCTTCAACATTGAATCCAATACATTGAAGACCGCACCTGTGTCTTCACCCTGATTTG
JMSF042C16+           TGTCCTTCAACATTGAATCCAATACATTGAAGACCGCACCTGTGTCTTCACCCTGAT--G
                      ____________________________________________________________
consensus             TGTCCTTCAACATTGAATCCAATACATTGAAGACCGCACCTGTGTCTTCACCCTGATTTG
 
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JMSF014A12+           GAGGCAACTCATTCCTCTCTGATGGAATTGCACTTCGCATAATGCCA-----TCTTGTAT
JMSF042C16+           GAGGCAACTCATTCCTCTCTGATGGAATTGCACTTCGCATAATGCCATCTTTTCTTGTAT
                      ____________________________________________________________
consensus             GAGGCAACTCATTCCTCTCTGATGGAATTGCACTTCGCATAATGCCATCTTTTCTTGTAT
 
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JMSF014A12+           TGATTAATTTTGAGCTGGGATTGGAGCAGAAAAAATCAGCAAAAAGAATATCAATTTGGT
JMSF042C16+           TGATTAATTTTGAGCTGGGATTGGAGCAGAAAAAATCAGCAAAAAGAATATCAATTTGGT
                      ____________________________________________________________
consensus             TGATTAATTTTGAGCTGGGATTGGAGCAGAAAAAATCAGCAAAAAGAATATCAATTTGGT
 
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JMSF014A12+           ATCTGATAGAGTCTAGGACTTGGAAGCTACCATTCAATATCCGGAGAAGAAAATGAGATT
JMSF042C16+           ATCTGATAGAGTCTAGGACTTGGAAGCTACCATTCAATATCCGGAGAAGAAAATGAGATT
                      ____________________________________________________________
consensus             ATCTGATAGAGTCTAGGACTTGGAAGCTACCATTCAATATCCGGAGAAGAAAATGAGATT
 
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JMSF014A12+           CTGAAGCTACTAACATCATTGTGATTGAGGATCGGAACCAATCTACAGAGCTTCGTCTTG
JMSF042C16+           CTGAAGCTACTAACATCATTGTGATTGAGGATCGGAACCAATCTACAGAGCTTCGTCTTG
                      ____________________________________________________________
consensus             CTGAAGCTACTAACATCATTGTGATTGAGGATCGGAACCAATCTACAGAGCTTCGTCTTG
 
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JMSF014A12+           CTCTGTCGGTCTTTCTTGTCCTCCGCCGCAGACAAGCTTTCGAGCAATCAC         
JMSF042C16+           CTCTGTCGGTCTTTCTTGTCCTCCGCCGCAGACAAGCTTTCGAGCAATCACTGAAGCTCC
                      ____________________________________________________________
consensus             CTCTGTCGGTCTTTCTTGTCCTCCGCCGCAGACAAGCTTTCGAGCAATCACTGAAGCTCC
 
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JMSF042C16+           CTGAATCTGAACTTCCCTGCTGTTCCGTGGCAGGCCGAAAGGGTTTCCTACGCTAAATCC
                      ____________________________________________________________
consensus             CTGAATCTGAACTTCCCTGCTGTTCCGTGGCAGGCCGAAAGGGTTTCCTACGCTAAATCC