Contig 000917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051M08Sequence644000917 (11)ref|XP_006366801.1|4e-74PREDICTED: oligoribonuclease-like [Solanum tuberosum]379000917 (11)
JMFN041O24Sequence512000917 (11)emb|CDP04008.1|6e-53unnamed protein product [Coffea canephora]
JMSF019D23Sequence208000917 (11)743000917 (11)ref|XP_009766088.1|8e-98PREDICTED: oligoribonuclease-like [Nicotiana sylvestris] ref|XP_009766089.1| PRE
JMSF042A11Sequence360000917 (11)305000917 (11)
JMSF042B11Sequence360000917 (11)305000917 (11)
JMSF043B11Sequence360000917 (11)306000917 (11)

Alignment

This contig is upended


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rJMFF051M08-                                       ACCCTGGAGAGTTTTTTTTTTTTTTTTGAAA
                      ____________________________________________________________
consensus                                          ACCCTGGAGAGTTTTTTTTTTTTTTTTGAAA
 
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rJMFF051M08-          TACTGAAATGCAATACACTTAGTTAAAATACTGAAATTCACACTGTTAGGGGAATCTAGC
rJMSF019D23-                                                      GTTAGGGGAATCTAGC
                      ____________________________________________________________
consensus             TACTGAAATGCAATACACTTAGTTAAAATACTGAAATTCACACTGTTAGGGGAATCTAGC
 
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rJMFF051M08-          AAAGCAAATGTTGGCAGCAACCAGCATAAATACTACAGCATATTAGAGAAATGATGTATG
JMFN041O24+                       GGCAGCAACCAGCATAAATACTACAGCATATTAGAGAAATGATGTATG
rJMSF019D23-          AAAGCAAATGTTGGCAGCAACCAGCATAAATACTACAGCATATTAGAGAAATGATGTATG
                      ____________________________________________________________
consensus             AAAGCAAATGTTGGCAGCAACCAGCATAAATACTACAGCATATTAGAGAAATGATGTATG
 
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rJMFF051M08-          CCTTGTCCACTTGCCACAGCAAAGCATAGTAGCATGATAGGTTATGGAGAGGTCGATGTT
JMFN041O24+           CCTTGTCCACTTGCCACAGCAAAGCATAGTAGCATGATAGGTTATGGAGAGGTCGATGTT
rJMSF019D23-          CCTTGTCCACTTGCCACAGCAAAGCATAGTAGCATGATAGGTTATGGAGAGGTCGATGTT
                      ____________________________________________________________
consensus             CCTTGTCCACTTGCCACAGCAAAGCATAGTAGCATGATAGGTTATGGAGAGGTCGATGTT
 
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rJMFF051M08-          AAGAAGTCTGTACCACTATACAGGGAAGGGAATACCATATTTCTGAGAAGGGGCATCGCG
JMFN041O24+           AAGAAGTCTGTACCACTATACAGGGAAGGGAATACCATATTTCTGAGAAGGGGCATCGCG
rJMSF019D23-          AAGAAGTCTGTACCACTATACAGGGAAGGGAATACCATATTTCTGAGAAGGGGCATCGCG
                      ____________________________________________________________
consensus             AAGAAGTCTGTACCACTATACAGGGAAGGGAATACCATATTTCTGAGAAGGGGCATCGCG
 
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rJMFF051M08-          CAATACCATACTTTCGCCATTACATAGTTGATAACCTTACGTAATTACCTCCTAGACTTG
JMFN041O24+           CAATACCATACTTTCGCCATTACATAGTTGATAACCTTACGTAATTACCTCCTAGACTTG
rJMSF019D23-          CAATACCATACTTTCGCCATTACATAGTTGATAACCTTACGTAATTACCTCCTAGACTTG
                      ____________________________________________________________
consensus             CAATACCATACTTTCGCCATTACATAGTTGATAACCTTACGTAATTACCTCCTAGACTTG
 
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rJMFF051M08-          GAGGATTTAAAAATGTGCTCCTTGTAGTATTTGAGCTCTGCTATGCTC            
JMFN041O24+           GAGGATTTAAAAATGTGCTCCTTGTAGTATTTGAGCTCTGCTATGCTCTCCTTAATGTCA
rJMSF019D23-          GAGGATTTAAAAATGTGCTCCTTGTAGTATTTGAGCTCTGCTATGCTCTCCTTAATGTCA
                      ____________________________________________________________
consensus             GAGGATTTAAAAATGTGCTCCTTGTAGTATTTGAGCTCTGCTATGCTCTCCTTAATGTCA
 
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JMFN041O24+           TCCATAGCTCTATGCTTGTTTTCCTTTCGAGGAGCCTTTTTGTTGTCTCTGGGGAACCAC
rJMSF019D23-          TCCATAGCTCTATGCTTGTTTTCCTTTCGAGGAGCCTTTTTGTTGTCTCTGGGGAACCAC
                      ____________________________________________________________
consensus             TCCATAGCTCTATGCTTGTTTTCCTTTCGAGGAGCCTTTTTGTTGTCTCTGGGGAACCAC
 
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JMFN041O24+           CGAACACATAATGCCTTGACACTACTGACATCGACAAGTACATGGGAGAAAAGACTAGCC
rJMSF019D23-          CGAACACATAATGCCTTGACACTACTGACATCGACAAGTACATGGGAGAAAAGACTAGCC
                      ____________________________________________________________
consensus             CGAACACATAATGCCTTGACACTACTGACATCGACAAGTACATGGGAGAAAAGACTAGCC
 
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JMFN041O24+           AGATCGGGCATGTACTTCTTCAAGAAGATGAAATCAACATAAACTGAATTCCCAGCAAGG
rJMSF019D23-          AGATCGGGCATGTACTTCTTCAAGAAGATGAAATCAACATAAACTGAATTCCCAGCAAGG
JMFF051M08+                                  GAAGATGAAATCACCATAAACTGAATTCCCAGCAAGG
                      ____________________________________________________________
consensus             AGATCGGGCATGTACTTCTTCAAGAAGATGAAATCAACATAAACTGAATTCCCAGCAAGG
 
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JMFN041O24+           AGGGGTGAATAAGTGCCAACATTTCTCTTCACAAATTCCACAAC                
rJMSF019D23-          AGGGGTGAATAAGTGCCAACATTTCTCTTCACAAATTCCACAACCTGATTCTCAGCTTCT
JMFF051M08+           AGGGGTGAATAAGTGCCAACATTTCTCTTCACAAATTCCACAACCTGATTCTCAGCTTCT
                      ____________________________________________________________
consensus             AGGGGTGAATAAGTGCCAACATTTCTCTTCACAAATTCCACAACCTGATTCTCAGCTTCT
 
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rJMSF019D23-          TTAACAGTGATTGTACTTTCAAGCACCTTTTCAGTCAGACTGCTTGCTGCATGATGCTCT
JMFF051M08+           TTAACAGTGATTGTACTTTCAAGCACCTTTTCAGTCAGACTGCTTGCTGCATGATGCTCT
                      ____________________________________________________________
consensus             TTAACAGTGATTGTACTTTCAAGCACCTTTTCAGTCAGACTGCTTGCTGCATGATGCTCT
 
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rJMSF019D23-          TGACACCATTCTCCCATATTATCTAGACACTCCTTTGGTTGATGAATAACCAAATCAGGT
JMFF051M08+           TGACACCATTCTCCCATATTATCTAGACACTCCTTTGGTTGATGAATAACCAAATCAGGT
                      ____________________________________________________________
consensus             TGACACCATTCTCCCATATTATCTAGACACTCCTTTGGTTGATGAATAACCAAATCAGGT
 
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rJMSF019D23-          CCCTCAATTGATTTGGTTAAACGTCCATCAGTGATCACACAAGCAATCTCCAATATCCTG
JMFF051M08+           CCCTCAATTGATTTGGTTAAACGTCCATCAGTGATCACACAAGCAATCTCCAATATCCTG
                      ____________________________________________________________
consensus             CCCTCAATTGATTTGGTTAAACGTCCATCAGTGATCACACAAGCAATCTCCAATATCCTG
 
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rJMSF019D23-          TCTACTT                                                     
JMFF051M08+           TCTACTTCAACATTCAAACCAGTCATTTCAAGGTCAATCCATACAAGCGGCAACTTGTAC
                      ____________________________________________________________
consensus             TCTACTTCAACATTCAAACCAGTCATTTCAAGGTCAATCCATACAAGCGGCAACTTGTAC
 
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JMFF051M08+           TCCTCACCGCTATCATCATCTTTTAGCTTTGTCACCTCTCCTGAGCAGTTTTCTTCTTTA
                      ____________________________________________________________
consensus             TCCTCACCGCTATCATCATCTTTTAGCTTTGTCACCTCTCCTGAGCAGTTTTCTTCTTTA
 
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JMFF051M08+           TTTTCTTTTCCATTTTCTTTGGACACTACTGCTGTATCCTCTTGACTATCAGCAACATCC
JMSF043B11+              TTTTTTCCATTTTCTTTGGACACTACTGCTGTATCCTCTTGACTATCAGCAACATCC
rJMSF042A11-                                                                ACATCC
rJMSF042B11-                                                                ACATCC
rJMSF043B11-                                                                ACATCC
JMSF019D23+                                                       ACTATCAGCAACATCC
JMSF042B11+              TTTTTTCCATTTTCTTTGGACACTACTGCTGTATCCTCTTGACTATCAGCAACATCC
JMSF042A11+                TTTTCCATTTTCTTTGGACACTNCNGCTGTATCCTCTTGACTATCAGCAACATCC
                      ____________________________________________________________
consensus             TTTTTTTTTCCATTTTCTTTGGACACTACTGCTGTATCCTCTTGACTATCAGCAACATCC
 
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JMFF051M08+           AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
JMSF043B11+           AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
rJMSF042A11-          AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
rJMSF042B11-          AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
rJMSF043B11-          AAATTCAGCAACGAAAAGGTATTAGCGAGCTTCATTCATTTTCAAAGCAGTGGCTGAACA
JMSF019D23+           AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
JMSF042B11+           AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
JMSF042A11+           AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
                      ____________________________________________________________
consensus             AAATTCAGCAACGAAAAGGTATTAGCGAG-TTCATTCATTTTCAAAGCAGTGGCTGAACA
 
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JMFF051M08+           TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
JMSF043B11+           TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
rJMSF042A11-          TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
rJMSF042B11-          TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
rJMSF043B11-          TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
JMSF019D23+           TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
JMSF042B11+           TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
JMSF042A11+           TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTNTTCAATACCTGCAAGC
                      ____________________________________________________________
consensus             TTAAGCTCCCCGAAAATTCACATCCACCAGATCACCAATGACTCTTCAATACCTGCAAGC
 
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JMFF051M08+           ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
JMSF043B11+           ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
rJMSF042A11-          ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
rJMSF042B11-          ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
rJMSF043B11-          ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
JMSF019D23+           ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
JMSF042B11+           ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
JMSF042A11+           ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
                      ____________________________________________________________
consensus             ACCAGCCAAGCCGTCGGTGGTGGTGCGAGGGGCGGAGGAGAGATGCAGCGGAGCCGGAAG
 
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JMFF051M08+           TGTCGAAT                                                    
JMSF043B11+           TGTCGAATGCTTCGAATCTTTGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
rJMSF042A11-          TGTCGAATGCTTCGAATCTTTGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
rJMSF042B11-          TGTCGAATGCTTCGAATCTTTGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
rJMSF043B11-          TGTCGAATGCTTCGAATCTTTGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
JMSF019D23+           TGTCGAATGCTTC                                               
JMSF042B11+           TGTCGAATGCTTCGAATCTTTGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
JMSF042A11+           TGTCGAATGCTTCGAATCTTCGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
                      ____________________________________________________________
consensus             TGTCGAATGCTTCGAATCTTTGGACAGATAATTTCTGTTTTATACTGTACTACAATTAGT
 
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JMSF043B11+           GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC
rJMSF042A11-          GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC
rJMSF042B11-          GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC
rJMSF043B11-          GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC
JMSF042B11+           GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC
JMSF042A11+           GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC
                      ____________________________________________________________
consensus             GAGTCAGTTTTACTTTCGCCGGATTTTTCGCCCCATTTCTATCCTTTACGAAAGTTCTGC