Contig 000916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042B05Sequence513000916 (5)ref|XP_006372859.1|8e-86asparaginyl-tRNA synthetase family protein [Populus trichocarpa] gb|ERP50656.1|
JMSF025D04Sequence669000916 (5)ref|XP_004234328.1|1e-78PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope776005735 (4)ref|XP_009592734.1|3e-81PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot
JMSF028I04Sequence329000916 (5)ref|XP_004234328.1|1e-11PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope752005735 (4)ref|XP_009592734.1|9e-86PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot
JMSF032O09Sequence669000916 (5)ref|XP_004234328.1|1e-78PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope734005735 (4)ref|XP_009592734.1|6e-80PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot
JMSF041P22Sequence797000916 (5)ref|XP_004234328.1|4e-102PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope855005735 (4)ref|XP_009592734.1|2e-100PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS042B05+ TGAATGTAGGACCAAATGTGTAGACATCATTGAGGGCAGTAGCATATGTTTCAGC
                      ____________________________________________________________
consensus TGAATGTAGGACCAAATGTGTAGACATCATTGAGGGCAGTAGCATATGTTTCAGC
 
. : . : . : . : . : . :
JMFS042B05+ ATTGAGTTGTCCAGAAACTGTTAAGAAGGCTGGTTTCCCAAAAAAGTCTTGAGACCAGTC
                      ____________________________________________________________
consensus ATTGAGTTGTCCAGAAACTGTTAAGAAGGCTGGTTTCCCAAAAAAGTCTTGAGACCAGTC
 
. : . : . : . : . : . :
JMFS042B05+ AATAGAACCAGATACAGTTTTTGGGATTTCGTTCACTGGAGAATTTGCAGGTTCTTTGGA
                      ____________________________________________________________
consensus AATAGAACCAGATACAGTTTTTGGGATTTCGTTCACTGGAGAATTTGCAGGTTCTTTGGA
 
. : . : . : . : . : . :
JMFS042B05+ GTTTGGAATCAAGGTTGTCACACAAAATTGTTCGCCAGCACCTTCACAATCAGAGGCAGT
                      ____________________________________________________________
consensus GTTTGGAATCAAGGTTGTCACACAAAATTGTTCGCCAGCACCTTCACAATCAGAGGCAGT
 
. : . : . : . : . : . :
JMFS042B05+ GACAATAGGACTTGAGACCCAAACAAAACCATTTTCTTGGAAAAACTTGTGTGTAGCAAA
JMSF041P22+ AAACCATTTTCTTGGAAAAACTTGTGTGTAGCAAA
                      ____________________________________________________________
consensus GACAATAGGACTTGAGACCCAAACAAAACCATTTTCTTGGAAAAACTTGTGTGTAGCAAA
 
. : . : . : . : . : . :
JMFS042B05+ GGCCAAAGCGTTCCTCACCCTTGCAACCGCACCAAAAGTATTTGTTCTAGGACGAAGATG
JMSF041P22+ GGCCAAAGCGTTCCTCACCCTTGCAACCGCACTAAAAGTATTTGTTCTAGGACGAAGATG
                      ____________________________________________________________
consensus GGCCAAAGCGTTCCTCACCCTTGCAACCGCACTAAAAGTATTTGTTCTAGGACGAAGATG
 
. : . : . : . : . : . :
JMFS042B05+ TGCTTTGGTTCTCAAAAATTCTCTGCTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
JMSF025D04+ CTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
JMSF032O09+ CTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
JMSF041P22+ TGCTTTGGTTCTCAAAAATTCTCTGCTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
                      ____________________________________________________________
consensus TGCTTTGGTTCTCAAAAATTCTCTGCTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
 
. : . : . : . : . : . :
JMFS042B05+ ACTTTTACCAACC
JMSF025D04+ ACTTTTACCAACCAGTATGAGCTTCTCAACTTTCAGTTCTATTTTCTGTTTAGATCCTTG
JMSF032O09+ ACTTTTACCAACCAGTATGAGCTTCTCAACTTTCAGTTCTATTTTCTGTTTAGATCCTTG
JMSF041P22+ ACTTTTACCAACCAGTACGAGCTTCACAACTTTCAGTTCTATTTTCTGTTTTGATCCTTG
                      ____________________________________________________________
consensus ACTTTTACCAACCAGTATGAGCTTCTCAACTTTCAGTTCTATTTTCTGTTTAGATCCTTG
 
. : . : . : . : . : . :
JMSF025D04+ GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCTCCAGTTACAATCAGACCATTCTC
JMSF032O09+ GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCTCCAGTTACAATCAGACCATTCTC
JMSF041P22+ GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCCCCTGTTATAATCAAACCATTCTC
                      ____________________________________________________________
consensus GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCTCCAGTTACAATCAGACCATTCTC
 
. : . : . : . : . : . :
JMSF025D04+ CACCTGATCATAACCCTCGGCATCCTGGCTCATAACACATTGCATATTCGAAAGACAGGA
JMSF032O09+ CACCTGATCATAACCCTCGGCATCCTGGCTCATAACACATTGCATATTCGAAAGACAGGA
JMSF041P22+ CACCTGATCATAACCCTCAGCATCCTGGCTCATAACACATTGCATATTCGAAAGACACGA
                      ____________________________________________________________
consensus CACCTGATCATAACCCTCGGCATCCTGGCTCATAACACATTGCATATTCGAAAGACAGGA
 
. : . : . : . : . : . :
JMSF025D04+ CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTGCTCGCAAAGTCCGAACCCAACC
JMSF032O09+ CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTGCTCGCAAAGTCCGAACCCAACC
JMSF041P22+ CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTACTCGCAAAGTCCGAACCCAACC
                      ____________________________________________________________
consensus CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTGCTCGCAAAGTCCGAACCCAACC
 
. : . : . : . : . : . :
JMSF025D04+ TCGAACCACTAAAGTCTCACCCAATCGATCCAACCCCTCATTAGGCCCTCCTTTTATGTC
JMSF032O09+ TCGAACCACTAAAGTCTCACCCAATCGATCCAACCCCTCATTAGGCCCTCCTTTTATGTC
JMSF041P22+ TCGAACCACTAAAGTCTCACCTAATCGATCCAAACCCTCATCAGGCCCTCCTTTTATGTC
                      ____________________________________________________________
consensus TCGAACCACTAAAGTCTCACCCAATCGATCCAACCCCTCATTAGGCCCTCCTTTTATGTC
 
. : . : . : . : . : . :
JMSF025D04+ TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
JMSF032O09+ TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
JMSF028I04+ TTCTCAATCTTCTCCGGAATTCCCCGATTTTCNTGCTTTCTTCAACTTCCTTTGT
JMSF041P22+ TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
                      ____________________________________________________________
consensus TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
 
. : . : . : . : . : . :
JMSF025D04+ CCCAAAGTCGCCTGATAAAGGCCTTTCCACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
JMSF032O09+ CCCAAAGTCGCCTGATAAAGGCCTTTCCACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
JMSF028I04+ CCCGAAGTCCCCTGATAAAGGCCTTTGGACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
JMSF041P22+ CCCGAAGTCCCCTGATAAAGGCCTTTGGACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
                      ____________________________________________________________
consensus CCCGAAGTCGCCTGATAAAGGCCTTTGGACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
 
. : . : . : . : . : . :
JMSF025D04+ TACAGAGCAGAAGCTGCGGCTGCGGCGGCAGACGGAATATGATGGTATGGAATGTGTTGG
JMSF032O09+ TACAGAGCAGAAGCTGCGGCTGCGGCGGCAGACGGAATATGATGGTATGGAATGTGTTGG
JMSF028I04+ TACAGAGCAGAAGTTGCGGNGGAGGCAG------------------ACGGAATGTNTTGG
JMSF041P22+ TACAGAGCAGAAGCTGCGGCGGAGGCAG------------------ACGGAATGTGTTGG
                      ____________________________________________________________
consensus TACAGAGCAGAAGCTGCGGCTGCGGCGGCAGACGGAATATGATGGTATGGAATGTGTTGG
 
. : . : . : . : . : . :
JMSF025D04+ AGGCTTCGGCAAGAAGCAGGGGTAGCTATTGGGGACTGCCGTGGTTTTGGTGGTTTTGTG
JMSF032O09+ AGGCTTCGGCAAGAAGCAGGGGTAGCTATTGGGGACTGCCGTGGTTTTGGTGGTTTTGTG
JMSF028I04+ AGGCTTCGGCAAGAAGTAGAGGTAGCTATTAGGGACTGCCGCGGTTTTGGTGGTTNTGTG
JMSF041P22+ AGGCTTCGGCAAGAAGTAGAGGTAGCTATTAGGGACTGCCGCGGTTTTGGTGGTTTTGTG
                      ____________________________________________________________
consensus AGGCTTCGGCAAGAAGTAGGGGTAGCTATTGGGGACTGCCGTGGTTTTGGTGGTTTTGTG
 
. : . : . : . : . : . :
JMSF025D04+ GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
JMSF032O09+ GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
JMSF028I04+ GTAGAGAGAGAGGANGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
JMSF041P22+ GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
                      ____________________________________________________________
consensus GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
 
. : . : . : . : . : . :
JMSF025D04+ CGACAAAGCCGCGGCCGCCATTTCAGTGTGAACA
JMSF032O09+ CGACAAAGCCGCGGCCGCCATTTCAGTGTGAACA
JMSF028I04+ CGACAGANCCGCGGCCGCCATTTCAGTGTGAACACGTTTGTGACCACTGGC
JMSF041P22+ CGACAGAGCCGCGGCCGCCATTTCAGTGTGAACACGTTTGTGACCACTGGCAGTGGCTTC
                      ____________________________________________________________
consensus CGACAGAGCCGCGGCCGCCATTTCAGTGTGAACACGTTTGTGACCACTGGCAGTGGCTTC