| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS042B05 | Sequence | 513 | 000916 (5) | ref|XP_006372859.1| | 8e-86 | asparaginyl-tRNA synthetase family protein [Populus trichocarpa] gb|ERP50656.1| | |||||
| JMSF025D04 | Sequence | 669 | 000916 (5) | ref|XP_004234328.1| | 1e-78 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 776 | 005735 (4) | ref|XP_009592734.1| | 3e-81 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
| JMSF028I04 | Sequence | 329 | 000916 (5) | ref|XP_004234328.1| | 1e-11 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 752 | 005735 (4) | ref|XP_009592734.1| | 9e-86 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
| JMSF032O09 | Sequence | 669 | 000916 (5) | ref|XP_004234328.1| | 1e-78 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 734 | 005735 (4) | ref|XP_009592734.1| | 6e-80 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
| JMSF041P22 | Sequence | 797 | 000916 (5) | ref|XP_004234328.1| | 4e-102 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 855 | 005735 (4) | ref|XP_009592734.1| | 2e-100 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
This contig is upended
. : . : . : . : . : . :
JMFS042B05+ TGAATGTAGGACCAAATGTGTAGACATCATTGAGGGCAGTAGCATATGTTTCAGC
____________________________________________________________
consensus TGAATGTAGGACCAAATGTGTAGACATCATTGAGGGCAGTAGCATATGTTTCAGC
. : . : . : . : . : . :
JMFS042B05+ ATTGAGTTGTCCAGAAACTGTTAAGAAGGCTGGTTTCCCAAAAAAGTCTTGAGACCAGTC
____________________________________________________________
consensus ATTGAGTTGTCCAGAAACTGTTAAGAAGGCTGGTTTCCCAAAAAAGTCTTGAGACCAGTC
. : . : . : . : . : . :
JMFS042B05+ AATAGAACCAGATACAGTTTTTGGGATTTCGTTCACTGGAGAATTTGCAGGTTCTTTGGA
____________________________________________________________
consensus AATAGAACCAGATACAGTTTTTGGGATTTCGTTCACTGGAGAATTTGCAGGTTCTTTGGA
. : . : . : . : . : . :
JMFS042B05+ GTTTGGAATCAAGGTTGTCACACAAAATTGTTCGCCAGCACCTTCACAATCAGAGGCAGT
____________________________________________________________
consensus GTTTGGAATCAAGGTTGTCACACAAAATTGTTCGCCAGCACCTTCACAATCAGAGGCAGT
. : . : . : . : . : . :
JMFS042B05+ GACAATAGGACTTGAGACCCAAACAAAACCATTTTCTTGGAAAAACTTGTGTGTAGCAAA
JMSF041P22+ AAACCATTTTCTTGGAAAAACTTGTGTGTAGCAAA
____________________________________________________________
consensus GACAATAGGACTTGAGACCCAAACAAAACCATTTTCTTGGAAAAACTTGTGTGTAGCAAA
. : . : . : . : . : . :
JMFS042B05+ GGCCAAAGCGTTCCTCACCCTTGCAACCGCACCAAAAGTATTTGTTCTAGGACGAAGATG
JMSF041P22+ GGCCAAAGCGTTCCTCACCCTTGCAACCGCACTAAAAGTATTTGTTCTAGGACGAAGATG
____________________________________________________________
consensus GGCCAAAGCGTTCCTCACCCTTGCAACCGCACTAAAAGTATTTGTTCTAGGACGAAGATG
. : . : . : . : . : . :
JMFS042B05+ TGCTTTGGTTCTCAAAAATTCTCTGCTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
JMSF025D04+ CTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
JMSF032O09+ CTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
JMSF041P22+ TGCTTTGGTTCTCAAAAATTCTCTGCTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
____________________________________________________________
consensus TGCTTTGGTTCTCAAAAATTCTCTGCTGACTCGCTTCTTCTGAATTGGGAAGGAAGGATC
. : . : . : . : . : . :
JMFS042B05+ ACTTTTACCAACC
JMSF025D04+ ACTTTTACCAACCAGTATGAGCTTCTCAACTTTCAGTTCTATTTTCTGTTTAGATCCTTG
JMSF032O09+ ACTTTTACCAACCAGTATGAGCTTCTCAACTTTCAGTTCTATTTTCTGTTTAGATCCTTG
JMSF041P22+ ACTTTTACCAACCAGTACGAGCTTCACAACTTTCAGTTCTATTTTCTGTTTTGATCCTTG
____________________________________________________________
consensus ACTTTTACCAACCAGTATGAGCTTCTCAACTTTCAGTTCTATTTTCTGTTTAGATCCTTG
. : . : . : . : . : . :
JMSF025D04+ GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCTCCAGTTACAATCAGACCATTCTC
JMSF032O09+ GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCTCCAGTTACAATCAGACCATTCTC
JMSF041P22+ GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCCCCTGTTATAATCAAACCATTCTC
____________________________________________________________
consensus GCTGCTCGCTATAGTGCCTTGTATCCATACTGATGCTCCAGTTACAATCAGACCATTCTC
. : . : . : . : . : . :
JMSF025D04+ CACCTGATCATAACCCTCGGCATCCTGGCTCATAACACATTGCATATTCGAAAGACAGGA
JMSF032O09+ CACCTGATCATAACCCTCGGCATCCTGGCTCATAACACATTGCATATTCGAAAGACAGGA
JMSF041P22+ CACCTGATCATAACCCTCAGCATCCTGGCTCATAACACATTGCATATTCGAAAGACACGA
____________________________________________________________
consensus CACCTGATCATAACCCTCGGCATCCTGGCTCATAACACATTGCATATTCGAAAGACAGGA
. : . : . : . : . : . :
JMSF025D04+ CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTGCTCGCAAAGTCCGAACCCAACC
JMSF032O09+ CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTGCTCGCAAAGTCCGAACCCAACC
JMSF041P22+ CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTACTCGCAAAGTCCGAACCCAACC
____________________________________________________________
consensus CCCATCATTAACCTCTATAAATGTAACGCTGCTCTGTGCTCGCAAAGTCCGAACCCAACC
. : . : . : . : . : . :
JMSF025D04+ TCGAACCACTAAAGTCTCACCCAATCGATCCAACCCCTCATTAGGCCCTCCTTTTATGTC
JMSF032O09+ TCGAACCACTAAAGTCTCACCCAATCGATCCAACCCCTCATTAGGCCCTCCTTTTATGTC
JMSF041P22+ TCGAACCACTAAAGTCTCACCTAATCGATCCAAACCCTCATCAGGCCCTCCTTTTATGTC
____________________________________________________________
consensus TCGAACCACTAAAGTCTCACCCAATCGATCCAACCCCTCATTAGGCCCTCCTTTTATGTC
. : . : . : . : . : . :
JMSF025D04+ TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
JMSF032O09+ TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
JMSF028I04+ TTCTCAATCTTCTCCGGAATTCCCCGATTTTCNTGCTTTCTTCAACTTCCTTTGT
JMSF041P22+ TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
____________________________________________________________
consensus TGCGATTCTCAATCTTCTCCGGAATTCCCCGATTTTCCTGCTTTCTTCAACTTCCTTTGT
. : . : . : . : . : . :
JMSF025D04+ CCCAAAGTCGCCTGATAAAGGCCTTTCCACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
JMSF032O09+ CCCAAAGTCGCCTGATAAAGGCCTTTCCACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
JMSF028I04+ CCCGAAGTCCCCTGATAAAGGCCTTTGGACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
JMSF041P22+ CCCGAAGTCCCCTGATAAAGGCCTTTGGACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
____________________________________________________________
consensus CCCGAAGTCGCCTGATAAAGGCCTTTGGACAGCTTCGCCAGACGAAACAGCGGAGCAAAC
. : . : . : . : . : . :
JMSF025D04+ TACAGAGCAGAAGCTGCGGCTGCGGCGGCAGACGGAATATGATGGTATGGAATGTGTTGG
JMSF032O09+ TACAGAGCAGAAGCTGCGGCTGCGGCGGCAGACGGAATATGATGGTATGGAATGTGTTGG
JMSF028I04+ TACAGAGCAGAAGTTGCGGNGGAGGCAG------------------ACGGAATGTNTTGG
JMSF041P22+ TACAGAGCAGAAGCTGCGGCGGAGGCAG------------------ACGGAATGTGTTGG
____________________________________________________________
consensus TACAGAGCAGAAGCTGCGGCTGCGGCGGCAGACGGAATATGATGGTATGGAATGTGTTGG
. : . : . : . : . : . :
JMSF025D04+ AGGCTTCGGCAAGAAGCAGGGGTAGCTATTGGGGACTGCCGTGGTTTTGGTGGTTTTGTG
JMSF032O09+ AGGCTTCGGCAAGAAGCAGGGGTAGCTATTGGGGACTGCCGTGGTTTTGGTGGTTTTGTG
JMSF028I04+ AGGCTTCGGCAAGAAGTAGAGGTAGCTATTAGGGACTGCCGCGGTTTTGGTGGTTNTGTG
JMSF041P22+ AGGCTTCGGCAAGAAGTAGAGGTAGCTATTAGGGACTGCCGCGGTTTTGGTGGTTTTGTG
____________________________________________________________
consensus AGGCTTCGGCAAGAAGTAGGGGTAGCTATTGGGGACTGCCGTGGTTTTGGTGGTTTTGTG
. : . : . : . : . : . :
JMSF025D04+ GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
JMSF032O09+ GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
JMSF028I04+ GTAGAGAGAGAGGANGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
JMSF041P22+ GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
____________________________________________________________
consensus GTAGAGAGAGAGGAGGCGGACGGCAGAGAAGGGTTTTAGGCGGAGGGAAGTGGTGGCTGG
. : . : . : . : . : . :
JMSF025D04+ CGACAAAGCCGCGGCCGCCATTTCAGTGTGAACA
JMSF032O09+ CGACAAAGCCGCGGCCGCCATTTCAGTGTGAACA
JMSF028I04+ CGACAGANCCGCGGCCGCCATTTCAGTGTGAACACGTTTGTGACCACTGGC
JMSF041P22+ CGACAGAGCCGCGGCCGCCATTTCAGTGTGAACACGTTTGTGACCACTGGCAGTGGCTTC
____________________________________________________________
consensus CGACAGAGCCGCGGCCGCCATTTCAGTGTGAACACGTTTGTGACCACTGGCAGTGGCTTC