Contig 000902:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034C04Sequence397000902 (4)emb|CDP01287.1|6e-06unnamed protein product [Coffea canephora]697002631 (4)emb|CDP01287.1|2e-12unnamed protein product [Coffea canephora]
JMSF003F21Sequence379000902 (4)669002631 (4)ref|XP_011017157.1|1e-11PREDICTED: cyclin-D3-1-like [Populus euphratica]
JMSF040D01Sequence645000902 (4)ref|XP_011074408.1|1e-44PREDICTED: cyclin-D3-3-like [Sesamum indicum]821002631 (4)emb|CAB61222.1|5e-88cyclin D3a [Antirrhinum majus]
JMSF047J21Sequence684000902 (4)emb|CDP01287.1|7e-51unnamed protein product [Coffea canephora]716002631 (4)ref|XP_006342647.1|7e-29PREDICTED: cyclin-D3-3-like isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047J21+ CCTCAAACACATACTCCGATTCCT
                      ____________________________________________________________
consensus CCTCAAACACATACTCCGATTCCT
 
. : . : . : . : . : . :
JMSF047J21+ CAACTNGGAAATCTAGGAGGAGAGGGACAAAGGTCTCTTCAACTTTAGCAGCAAGAGAGA
JMSF040D01+ GGAGGAGAGGGACAAAGGTCTCTTCAACTTTAGCAGCAAGAGAGA
                      ____________________________________________________________
consensus CAACTNGGAAATCTAGGAGGAGAGGGACAAAGGTCTCTTCAACTTTAGCAGCAAGAGAGA
 
. : . : . : . : . : . :
JMSF047J21+ GACAAGCCACAGCAGCGAGTTGACTCATCCATGGCTTCTGAGTCTGAGACTCAAGGCTGA
JMSF040D01+ GACAAGCCACAGCAGCGAGTTGACTCATCCATGGCTTCTGAGTCTGAGACTCAAGGCTGA
                      ____________________________________________________________
consensus GACAAGCCACAGCAGCGAGTTGACTCATCCATGGCTTCTGAGTCTGAGACTCAAGGCTGA
 
. : . : . : . : . : . :
JMSF047J21+ GGAAGAAGAGCCTGTCAAGATAGTTGACTGCAAGAAGGGCAGTTTGGGCTGAGAAGGAGT
JMSF040D01+ GGAAGAAGAGCCTGTCAAGATAGTTGACTGCAAGAAGGGCAGTTTGGGCTGAGAAGGAGT
                      ____________________________________________________________
consensus GGAAGAAGAGCCTGTCAAGATAGTTGACTGCAAGAAGGGCAGTTTGGGCTGAGAAGGAGT
 
. : . : . : . : . : . :
JMSF047J21+ AATGGCTGGTGACCTTAAGAACCCACTCCACAGCCTCACTTCTGGCCTTAGCCAAATCTG
JMSF040D01+ AATGGCTGGTGACCTTAAGAACCCACTCCACAGCCTCACTTCTGGCCTTAGCCAAATCTG
                      ____________________________________________________________
consensus AATGGCTGGTGACCTTAAGAACCCACTCCACAGCCTCACTTCTGGCCTTAGCCAAATCTG
 
. : . : . : . : . : . :
JMFF034C04+ CATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
JMSF047J21+ GGTTTTTCTGAACCACATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
JMSF003F21+ TTAGACAACAAAGAGCTCA
JMSF040D01+ GGTTTTTCTGAACCACATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
                      ____________________________________________________________
consensus GGTTTTTCTGAACCACATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
 
. : . : . : . : . : . :
JMFF034C04+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
JMSF047J21+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
JMSF003F21+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
JMSF040D01+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
                      ____________________________________________________________
consensus GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
 
. : . : . : . : . : . :
JMFF034C04+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
JMSF047J21+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
JMSF003F21+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
JMSF040D01+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
                      ____________________________________________________________
consensus CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
 
. : . : . : . : . : . :
JMFF034C04+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
JMSF047J21+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
JMSF003F21+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
JMSF040D01+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
                      ____________________________________________________________
consensus CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
 
. : . : . : . : . : . :
JMFF034C04+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
JMSF047J21+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
JMSF003F21+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
JMSF040D01+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
                      ____________________________________________________________
consensus TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
 
. : . : . : . : . : . :
JMFF034C04+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
JMSF047J21+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
JMSF003F21+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
JMSF040D01+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATCTCTCTCTCTCCCTCTCGATCTC
                      ____________________________________________________________
consensus AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
 
. : . : . : . : . : . :
JMFF034C04+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTT
JMSF047J21+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC
JMSF003F21+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC
JMSF040D01+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC
                      ____________________________________________________________
consensus TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC