| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034C04 | Sequence | 397 | 000902 (4) | emb|CDP01287.1| | 6e-06 | unnamed protein product [Coffea canephora] | 697 | 002631 (4) | emb|CDP01287.1| | 2e-12 | unnamed protein product [Coffea canephora] |
| JMSF003F21 | Sequence | 379 | 000902 (4) | 669 | 002631 (4) | ref|XP_011017157.1| | 1e-11 | PREDICTED: cyclin-D3-1-like [Populus euphratica] | |||
| JMSF040D01 | Sequence | 645 | 000902 (4) | ref|XP_011074408.1| | 1e-44 | PREDICTED: cyclin-D3-3-like [Sesamum indicum] | 821 | 002631 (4) | emb|CAB61222.1| | 5e-88 | cyclin D3a [Antirrhinum majus] |
| JMSF047J21 | Sequence | 684 | 000902 (4) | emb|CDP01287.1| | 7e-51 | unnamed protein product [Coffea canephora] | 716 | 002631 (4) | ref|XP_006342647.1| | 7e-29 | PREDICTED: cyclin-D3-3-like isoform X2 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF047J21+ CCTCAAACACATACTCCGATTCCT
____________________________________________________________
consensus CCTCAAACACATACTCCGATTCCT
. : . : . : . : . : . :
JMSF047J21+ CAACTNGGAAATCTAGGAGGAGAGGGACAAAGGTCTCTTCAACTTTAGCAGCAAGAGAGA
JMSF040D01+ GGAGGAGAGGGACAAAGGTCTCTTCAACTTTAGCAGCAAGAGAGA
____________________________________________________________
consensus CAACTNGGAAATCTAGGAGGAGAGGGACAAAGGTCTCTTCAACTTTAGCAGCAAGAGAGA
. : . : . : . : . : . :
JMSF047J21+ GACAAGCCACAGCAGCGAGTTGACTCATCCATGGCTTCTGAGTCTGAGACTCAAGGCTGA
JMSF040D01+ GACAAGCCACAGCAGCGAGTTGACTCATCCATGGCTTCTGAGTCTGAGACTCAAGGCTGA
____________________________________________________________
consensus GACAAGCCACAGCAGCGAGTTGACTCATCCATGGCTTCTGAGTCTGAGACTCAAGGCTGA
. : . : . : . : . : . :
JMSF047J21+ GGAAGAAGAGCCTGTCAAGATAGTTGACTGCAAGAAGGGCAGTTTGGGCTGAGAAGGAGT
JMSF040D01+ GGAAGAAGAGCCTGTCAAGATAGTTGACTGCAAGAAGGGCAGTTTGGGCTGAGAAGGAGT
____________________________________________________________
consensus GGAAGAAGAGCCTGTCAAGATAGTTGACTGCAAGAAGGGCAGTTTGGGCTGAGAAGGAGT
. : . : . : . : . : . :
JMSF047J21+ AATGGCTGGTGACCTTAAGAACCCACTCCACAGCCTCACTTCTGGCCTTAGCCAAATCTG
JMSF040D01+ AATGGCTGGTGACCTTAAGAACCCACTCCACAGCCTCACTTCTGGCCTTAGCCAAATCTG
____________________________________________________________
consensus AATGGCTGGTGACCTTAAGAACCCACTCCACAGCCTCACTTCTGGCCTTAGCCAAATCTG
. : . : . : . : . : . :
JMFF034C04+ CATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
JMSF047J21+ GGTTTTTCTGAACCACATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
JMSF003F21+ TTAGACAACAAAGAGCTCA
JMSF040D01+ GGTTTTTCTGAACCACATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
____________________________________________________________
consensus GGTTTTTCTGAACCACATTAAACAACTCATTTTCTTGTTCCTTAGACAACAAAGAGCTCA
. : . : . : . : . : . :
JMFF034C04+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
JMSF047J21+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
JMSF003F21+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
JMSF040D01+ GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
____________________________________________________________
consensus GCTCACCATCTTCCCACAACAAATCTTGTTCCAGCAAAACCACAGATTCTTCTTCTTCTT
. : . : . : . : . : . :
JMFF034C04+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
JMSF047J21+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
JMSF003F21+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
JMSF040D01+ CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
____________________________________________________________
consensus CTTCTTGTTCTTCAATGGAACAGCTGGGATCTCTGTCTGCTTGTCCCCAGTGCTCTCCTT
. : . : . : . : . : . :
JMFF034C04+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
JMSF047J21+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
JMSF003F21+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
JMSF040D01+ CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
____________________________________________________________
consensus CTTCTTCACAGTACAAAGCATCAAACAAAAATGGAAGCTTTTGTGGTTCTTGAAATGGCA
. : . : . : . : . : . :
JMFF034C04+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
JMSF047J21+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
JMSF003F21+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
JMSF040D01+ TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
____________________________________________________________
consensus TCTTCTTCCGGGAAGAAGAGGTTTAGGCGTGTTTGCATTTATTTCATTTCATTCAAGAAA
. : . : . : . : . : . :
JMFF034C04+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
JMSF047J21+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
JMSF003F21+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
JMSF040D01+ AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATCTCTCTCTCTCCCTCTCGATCTC
____________________________________________________________
consensus AGATAATCAAGAAGCATAATGGCTCAACTTGAGCTATATCTCTCTCTCCCTCTCGATCTC
. : . : . : . : . : . :
JMFF034C04+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTT
JMSF047J21+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC
JMSF003F21+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC
JMSF040D01+ TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC
____________________________________________________________
consensus TCTGTCTCTCTCTAGAATTGGAACTTGGATGGAAAAAACTTGGGGGAGAGTTGGGGACCC