Contig 000897:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016N20Sequence521000897 (7)ref|XP_009600020.1|7e-44PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor739011026 (8)ref|XP_009793551.1|8e-105PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF017I20Sequence580000897 (7)ref|XP_009600020.1|4e-43PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor633011026 (8)ref|XP_009600023.1|4e-75PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF043N16Sequence637000897 (7)gb|AHL84161.1|9e-55geranyl pyrophosphate synthase [Nicotiana tabacum]569011026 (8)ref|XP_009600023.1|4e-77PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF051M21Sequence645000897 (7)ref|XP_009600020.1|2e-55PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor610011026 (8)ref|XP_009600023.1|7e-76PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF022F23Sequence692000897 (7)ref|XP_009600020.1|2e-27PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor758011026 (8)ref|XP_009600021.1|2e-114PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF024H08Sequence652000897 (7)ref|XP_009600023.1|8e-19PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor495008148 (5)ref|XP_008371544.1|8e-50PREDICTED: 60S ribosomal protein L44-like [Malus domestica]
JMSF039K08Sequence673000897 (7)ref|XP_009600020.1|2e-20PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor744011026 (8)ref|XP_009793552.1|3e-102PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF016N20+ TTCTAAAGAAATACTCAGAAGCTGAAGCAAGCTTTGGCACCTCTGCTATTA
JMFF017I20+ CTAAAGAAATACTCAGAAGCTGAAGCAAGCTTTGGCACCTCTGCTATTA
                      ____________________________________________________________
consensus TTCTAAAGAAATACTCAGAAGCTGAAGCAAGCTTTGGCACCTCTGCTATTA
 
. : . : . : . : . : . :
JMFF016N20+ CCATTGCCCTCAGCTTGTTTGCCACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
JMFF017I20+ CCATTGCCCTCAGCTTGTTTGCCACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
JMSF022F23+ ACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
JMSF039K08+ AGTGAAAATGGAT
                      ____________________________________________________________
consensus CCATTGCCCTCAGCTTGTTTGCCACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
 
. : . : . : . : . : . :
JMFF016N20+ CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMFF017I20+ CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMFF051M21+ CCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMFF043N16+ CCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMSF024H08+ CCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMSF022F23+ CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMSF039K08+ CCAATTGCTCNTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
                      ____________________________________________________________
consensus CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
 
. : . : . : . : . : . :
JMFF016N20+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMFF017I20+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMFF051M21+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMFF043N16+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMSF024H08+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMSF022F23+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMSF039K08+ CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
                      ____________________________________________________________
consensus CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
 
. : . : . : . : . : . :
JMFF016N20+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMFF017I20+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMFF051M21+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMFF043N16+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMSF024H08+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMSF022F23+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMSF039K08+ AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
                      ____________________________________________________________
consensus AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
 
. : . : . : . : . : . :
JMFF016N20+ GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMFF017I20+ GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMFF051M21+ GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMFF043N16+ GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMSF024H08+ GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMSF022F23+ GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMSF039K08+ GCTACTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
                      ____________________________________________________________
consensus GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
 
. : . : . : . : . : . :
JMFF016N20+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMFF017I20+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMFF051M21+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMFF043N16+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMSF024H08+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMSF022F23+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMSF039K08+ GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
                      ____________________________________________________________
consensus GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
 
. : . : . : . : . : . :
JMFF016N20+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMFF017I20+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMFF051M21+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMFF043N16+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMSF024H08+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMSF022F23+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMSF039K08+ CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
                      ____________________________________________________________
consensus CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
 
. : . : . : . : . : . :
JMFF016N20+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGC
JMFF017I20+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMFF051M21+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMFF043N16+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMSF024H08+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMSF022F23+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMSF039K08+ GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
                      ____________________________________________________________
consensus GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
 
. : . : . : . : . : . :
JMFF017I20+ AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCT
JMFF051M21+ AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTT
JMFF043N16+ AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTT
JMSF024H08+ AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCT
JMSF022F23+ AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTTAC
JMSF039K08+ AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTTAC
                      ____________________________________________________________
consensus AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTTAC
 
. : . : . : . : . : . :
JMSF022F23+ GTCCAAACCAAATGCCCCTTTCGCAAGAAAAATTGAGCCGCGTGTACGGGAAGGCGGCGG
JMSF039K08+ GTCCAAACCAAATGCCCCTTTCGCAAGAAAAATTGAGCCGCGTGTACGGGAAGGCGGCGG
                      ____________________________________________________________
consensus GTCCAAACCAAATGCCCCTTTCGCAAGAAAAATTGAGCCGCGTGTACGGGAAGGCGGCGG
 
. : . : . : . : . : . :
JMSF022F23+ CGGCGAGGGAAATGGCCAAGCAGATCTTGGTGGCTTGGTCTTTAGGGAAGCATGGCGCGT
JMSF039K08+ CGGCGAGGGAAATGGCCAAGCAGATCTTGGTGGCTTGGTCTTTAGGGAAGCATGGCGCGT
                      ____________________________________________________________
consensus CGGCGAGGGAAATGGCCAAGCAGATCTTGGTGGCTTGGTCTTTAGGGAAGCATGGCGCGT
 
. : . : . : . : . : . :
JMSF022F23+ TGTAGGCTCCTGCAAATCTGGAACTAAAACCGGTGGGTGGGTTGCACCTGGT
JMSF039K08+ TGTAGGCTCCTGCAAATCTGGAACTAAAACCGGTGGGTGGGTTGCACCTGGTTCGAACCC
                      ____________________________________________________________
consensus TGTAGGCTCCTGCAAATCTGGAACTAAAACCGGTGGGTGGGTTGCACCTGGTTCGAACCC