Contig 000897:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016N20Sequence521000897 (7)ref|XP_009600020.1|7e-44PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor739011026 (8)ref|XP_009793551.1|8e-105PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF017I20Sequence580000897 (7)ref|XP_009600020.1|4e-43PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor633011026 (8)ref|XP_009600023.1|4e-75PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF043N16Sequence637000897 (7)gb|AHL84161.1|9e-55geranyl pyrophosphate synthase [Nicotiana tabacum]569011026 (8)ref|XP_009600023.1|4e-77PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF051M21Sequence645000897 (7)ref|XP_009600020.1|2e-55PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor610011026 (8)ref|XP_009600023.1|7e-76PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF022F23Sequence692000897 (7)ref|XP_009600020.1|2e-27PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor758011026 (8)ref|XP_009600021.1|2e-114PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF024H08Sequence652000897 (7)ref|XP_009600023.1|8e-19PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor495008148 (5)ref|XP_008371544.1|8e-50PREDICTED: 60S ribosomal protein L44-like [Malus domestica]
JMSF039K08Sequence673000897 (7)ref|XP_009600020.1|2e-20PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor744011026 (8)ref|XP_009793552.1|3e-102PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor

Alignment

This contig is upended


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JMFF016N20+                    TTCTAAAGAAATACTCAGAAGCTGAAGCAAGCTTTGGCACCTCTGCTATTA
JMFF017I20+                      CTAAAGAAATACTCAGAAGCTGAAGCAAGCTTTGGCACCTCTGCTATTA
                      ____________________________________________________________
consensus                      TTCTAAAGAAATACTCAGAAGCTGAAGCAAGCTTTGGCACCTCTGCTATTA
 
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JMFF016N20+           CCATTGCCCTCAGCTTGTTTGCCACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
JMFF017I20+           CCATTGCCCTCAGCTTGTTTGCCACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
JMSF022F23+                                  ACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
JMSF039K08+                                                          AGTGAAAATGGAT
                      ____________________________________________________________
consensus             CCATTGCCCTCAGCTTGTTTGCCACAAGTGATAATTCATCAGCAACAAGTGAAAATGGAT
 
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JMFF016N20+           CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMFF017I20+           CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMFF051M21+                    CCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMFF043N16+                    CCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMSF024H08+                    CCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMSF022F23+           CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
JMSF039K08+           CCAATTGCTCNTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
                      ____________________________________________________________
consensus             CCAATTGCTCCTCGGCTACAGCACTGCTTTGGTGATGAACCTGCTGACCGATACTCTTCA
 
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JMFF016N20+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMFF017I20+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMFF051M21+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMFF043N16+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMSF024H08+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMSF022F23+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
JMSF039K08+           CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
                      ____________________________________________________________
consensus             CAGCATTAGACACCCAATAATAAATTGCTCTCCTACCCAAAACCTGTTGGGAAGCGTCAA
 
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JMFF016N20+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMFF017I20+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMFF051M21+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMFF043N16+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMSF024H08+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMSF022F23+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
JMSF039K08+           AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
                      ____________________________________________________________
consensus             AGGGGGCGGGGAAGATAGAGGAATTTGTAGGGGAAAACAAGTGATGTCGGTGATGCTGCT
 
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JMFF016N20+           GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMFF017I20+           GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMFF051M21+           GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMFF043N16+           GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMSF024H08+           GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMSF022F23+           GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
JMSF039K08+           GCTACTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
                      ____________________________________________________________
consensus             GCTGCTCAACGGGCAAGGATAATAGCCATCTAAATCTATTGAAATTGCCTCTGGAAATCC
 
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JMFF016N20+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMFF017I20+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMFF051M21+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMFF043N16+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMSF024H08+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMSF022F23+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
JMSF039K08+           GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
                      ____________________________________________________________
consensus             GAGATAGTTCTCTTGAGAGTAACATATCTTCTTCTTCTTCTCCTCCTTTTGCTTCTTATT
 
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JMFF016N20+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMFF017I20+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMFF051M21+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMFF043N16+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMSF024H08+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMSF022F23+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
JMSF039K08+           CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
                      ____________________________________________________________
consensus             CTTCTTCTTAGATGTGTAATATACGTATATGTGCGAGCGAGAGAGGGAGGGCTTAGGGCG
 
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JMFF016N20+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGC          
JMFF017I20+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMFF051M21+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMFF043N16+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMSF024H08+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMSF022F23+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
JMSF039K08+           GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
                      ____________________________________________________________
consensus             GCGGTTGAGTCAAAGTAAGGGAGAAGAAGATTAATAGTGATGATTAAAGCGGCGGGCGGC
 
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JMFF017I20+           AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCT         
JMFF051M21+           AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTT  
JMFF043N16+           AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTT  
JMSF024H08+           AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCT         
JMSF022F23+           AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTTAC
JMSF039K08+           AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTTAC
                      ____________________________________________________________
consensus             AGGGAGATGAGTTTGGTTTAGAAAATGCAGTTGAATGACGAAGCCAATTCTGGACCTTAC
 
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JMSF022F23+           GTCCAAACCAAATGCCCCTTTCGCAAGAAAAATTGAGCCGCGTGTACGGGAAGGCGGCGG
JMSF039K08+           GTCCAAACCAAATGCCCCTTTCGCAAGAAAAATTGAGCCGCGTGTACGGGAAGGCGGCGG
                      ____________________________________________________________
consensus             GTCCAAACCAAATGCCCCTTTCGCAAGAAAAATTGAGCCGCGTGTACGGGAAGGCGGCGG
 
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JMSF022F23+           CGGCGAGGGAAATGGCCAAGCAGATCTTGGTGGCTTGGTCTTTAGGGAAGCATGGCGCGT
JMSF039K08+           CGGCGAGGGAAATGGCCAAGCAGATCTTGGTGGCTTGGTCTTTAGGGAAGCATGGCGCGT
                      ____________________________________________________________
consensus             CGGCGAGGGAAATGGCCAAGCAGATCTTGGTGGCTTGGTCTTTAGGGAAGCATGGCGCGT
 
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JMSF022F23+           TGTAGGCTCCTGCAAATCTGGAACTAAAACCGGTGGGTGGGTTGCACCTGGT        
JMSF039K08+           TGTAGGCTCCTGCAAATCTGGAACTAAAACCGGTGGGTGGGTTGCACCTGGTTCGAACCC
                      ____________________________________________________________
consensus             TGTAGGCTCCTGCAAATCTGGAACTAAAACCGGTGGGTGGGTTGCACCTGGTTCGAACCC