Contig 000896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028L23Sequence610000896 (5)emb|CDP07923.1|7e-61unnamed protein product [Coffea canephora]704010049 (5)emb|CDP07923.1|1e-80unnamed protein product [Coffea canephora]
JMFF036J04Sequence521000896 (5)emb|CDP07923.1|1e-65unnamed protein product [Coffea canephora]710010049 (5)emb|CDP07923.1|6e-81unnamed protein product [Coffea canephora]
JMFS051D11Sequence592000896 (5)emb|CDP07923.1|1e-53unnamed protein product [Coffea canephora]
JMSF007B08Sequence242000896 (5)emb|CDP07923.1|2e-30unnamed protein product [Coffea canephora]773010049 (5)emb|CDP07923.1|4e-99unnamed protein product [Coffea canephora]
JMSF039H16Sequence595000896 (5)emb|CDP07923.1|3e-49unnamed protein product [Coffea canephora]898010049 (5)emb|CDP07923.1|1e-81unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF007B08+ ACATCA
JMFF036J04+ ACTCTAGCAGCATCTTTTGCCTTTTCAAAAGATCCATGGTACATCA
JMFF028L23+ ACATCA
                      ____________________________________________________________
consensus ACTCTAGCAGCATCTTTTGCCTTTTCAAAAGATCCATGGTACATCA
 
. : . : . : . : . : . :
JMSF007B08+ AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTTGTCTG
JMFF036J04+ AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTTGTCTG
JMFF028L23+ AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTNGTCTG
JMFS051D11+ CTGCAGAATTAGATGCTTTGTCTG
                      ____________________________________________________________
consensus AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTTGTCTG
 
. : . : . : . : . : . :
JMSF007B08+ TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMFF036J04+ TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMFF028L23+ TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMFS051D11+ TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMSF039H16+ CACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
                      ____________________________________________________________
consensus TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
 
. : . : . : . : . : . :
JMSF007B08+ GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMFF036J04+ GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMFF028L23+ GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMFS051D11+ GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMSF039H16+ GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
                      ____________________________________________________________
consensus GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
 
. : . : . : . : . : . :
JMSF007B08+ GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACC
JMFF036J04+ GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
JMFF028L23+ GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
JMFS051D11+ GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
JMSF039H16+ GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
                      ____________________________________________________________
consensus GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
 
. : . : . : . : . : . :
JMFF036J04+ TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
JMFF028L23+ TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
JMFS051D11+ TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
JMSF039H16+ TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
                      ____________________________________________________________
consensus TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
 
. : . : . : . : . : . :
JMFF036J04+ GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
JMFF028L23+ GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
JMFS051D11+ GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
JMSF039H16+ GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
                      ____________________________________________________________
consensus GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
 
. : . : . : . : . : . :
JMFF036J04+ CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
JMFF028L23+ CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
JMFS051D11+ CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
JMSF039H16+ CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
                      ____________________________________________________________
consensus CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
 
. : . : . : . : . : . :
JMFF036J04+ CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGATCTG
JMFF028L23+ CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
JMFS051D11+ CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
JMSF039H16+ CGGTATCGGCAGACTGGCCAACTGCGACCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
                      ____________________________________________________________
consensus CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
 
. : . : . : . : . : . :
JMFF028L23+ CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
JMFS051D11+ CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
JMSF039H16+ CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
                      ____________________________________________________________
consensus CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
 
. : . : . : . : . : . :
JMFF028L23+ GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
JMFS051D11+ GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
JMSF039H16+ GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
                      ____________________________________________________________
consensus GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
 
. : . : . : . : . : . :
JMFF028L23+ ACC
JMFS051D11+ ACCGTCTTCTTCCTGCTCGTAAACTCTT
JMSF039H16+ ACCGTCTTCTTCCTGCTCGTAAACTCTTTCTGATAAGGCATTTGTGTTTTTATTTTAGCC
                      ____________________________________________________________
consensus ACCGTCTTCTTCCTGCTCGTAAACTCTTTCTGATAAGGCATTTGTGTTTTTATTTTAGCC