Contig 000896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028L23Sequence610000896 (5)emb|CDP07923.1|7e-61unnamed protein product [Coffea canephora]704010049 (5)emb|CDP07923.1|1e-80unnamed protein product [Coffea canephora]
JMFF036J04Sequence521000896 (5)emb|CDP07923.1|1e-65unnamed protein product [Coffea canephora]710010049 (5)emb|CDP07923.1|6e-81unnamed protein product [Coffea canephora]
JMFS051D11Sequence592000896 (5)emb|CDP07923.1|1e-53unnamed protein product [Coffea canephora]
JMSF007B08Sequence242000896 (5)emb|CDP07923.1|2e-30unnamed protein product [Coffea canephora]773010049 (5)emb|CDP07923.1|4e-99unnamed protein product [Coffea canephora]
JMSF039H16Sequence595000896 (5)emb|CDP07923.1|3e-49unnamed protein product [Coffea canephora]898010049 (5)emb|CDP07923.1|1e-81unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF007B08+                                                                 ACATCA
JMFF036J04+                         ACTCTAGCAGCATCTTTTGCCTTTTCAAAAGATCCATGGTACATCA
JMFF028L23+                                                                 ACATCA
                      ____________________________________________________________
consensus                           ACTCTAGCAGCATCTTTTGCCTTTTCAAAAGATCCATGGTACATCA
 
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JMSF007B08+           AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTTGTCTG
JMFF036J04+           AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTTGTCTG
JMFF028L23+           AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTNGTCTG
JMFS051D11+                                               CTGCAGAATTAGATGCTTTGTCTG
                      ____________________________________________________________
consensus             AAGCAAAAGGTGGGCGATACAAAGAAGCAAGATTGTCTGCAGAATTAGATGCTTTGTCTG
 
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JMSF007B08+           TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMFF036J04+           TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMFF028L23+           TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMFS051D11+           TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
JMSF039H16+                CACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
                      ____________________________________________________________
consensus             TTTCCCACACTCCAGGGTGTTTCATTTCCTGCTCAAAATTGCGGAAGGGAACCACTGAAC
 
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JMSF007B08+           GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMFF036J04+           GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMFF028L23+           GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMFS051D11+           GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
JMSF039H16+           GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
                      ____________________________________________________________
consensus             GTGCTTCATGTGCTGAACCTCCCATTGCGGGTAGTCCACGAATCACTGCAGTGTCATAAA
 
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JMSF007B08+           GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACC           
JMFF036J04+           GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
JMFF028L23+           GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
JMFS051D11+           GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
JMSF039H16+           GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
                      ____________________________________________________________
consensus             GAACATCCCTTATTACAGGCAAAGGTGGCCGTACTTCATCTCTATCACCTTGCTTTTCAC
 
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JMFF036J04+           TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
JMFF028L23+           TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
JMFS051D11+           TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
JMSF039H16+           TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
                      ____________________________________________________________
consensus             TTTCATCTCCCGAGCCTTTTATAGATCCACTGATCGAACTCAAGCTGGGATCAGGCAGAG
 
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JMFF036J04+           GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
JMFF028L23+           GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
JMFS051D11+           GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
JMSF039H16+           GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
                      ____________________________________________________________
consensus             GTGCAGTGTTCTCCAGTGGGGAATATGAAGATGGTGCTGCCACCCCTCCATCATTTCCAA
 
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JMFF036J04+           CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
JMFF028L23+           CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
JMFS051D11+           CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
JMSF039H16+           CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
                      ____________________________________________________________
consensus             CATAAAAAAGCTGAAGTGCTTCCTCAAGCTTCCAACTTGTAGCCTGAAGGAACTGACGCG
 
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JMFF036J04+           CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGATCTG     
JMFF028L23+           CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
JMFS051D11+           CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
JMSF039H16+           CGGTATCGGCAGACTGGCCAACTGCGACCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
                      ____________________________________________________________
consensus             CGGTATCGGCAGACTGGCCAACTGCGATCTCGAGGAAGGAAGCGACCAAGGTCTGCTGTT
 
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JMFF028L23+           CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
JMFS051D11+           CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
JMSF039H16+           CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
                      ____________________________________________________________
consensus             CGGACGCCGACAACGCGCCGTCCATTCTCGGGAGGCTGAAAGCCGAGGTTTATAGTAGTG
 
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JMFF028L23+           GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
JMFS051D11+           GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
JMSF039H16+           GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
                      ____________________________________________________________
consensus             GGTACTACTCCTAAGTCCTAACTGGGTCGGATCAGAGTGTTTCTTCTTCTACTCTTCTTC
 
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JMFF028L23+           ACC                                                         
JMFS051D11+           ACCGTCTTCTTCCTGCTCGTAAACTCTT                                
JMSF039H16+           ACCGTCTTCTTCCTGCTCGTAAACTCTTTCTGATAAGGCATTTGTGTTTTTATTTTAGCC
                      ____________________________________________________________
consensus             ACCGTCTTCTTCCTGCTCGTAAACTCTTTCTGATAAGGCATTTGTGTTTTTATTTTAGCC