Contig 000893:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E11Sequence559000893 (9)gb|KJB20721.1|5e-39hypothetical protein B456_003G161000 [Gossypium raimondii]752004712 (11)ref|XP_010278591.1|2e-55PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera]
JMFF008C21Sequence564000893 (9)gb|KJB20721.1|5e-35hypothetical protein B456_003G161000 [Gossypium raimondii]724004712 (11)ref|XP_010278589.1|8e-73PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X2 [Nelumbo nucifera]
JMFF012I23Sequence536000893 (9)gb|KJB20721.1|3e-37hypothetical protein B456_003G161000 [Gossypium raimondii]732004712 (11)ref|XP_009801536.1|6e-52PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Nicotiana sylvestris]
JMFF012M22Sequence462000893 (9)gb|KJB20721.1|5e-21hypothetical protein B456_003G161000 [Gossypium raimondii]574004712 (11)ref|XP_011463819.1|3e-38PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X2 [Fragaria vesca sub
JMFF013G20Sequence531000893 (9)gb|KHG00577.1|1e-30hypothetical protein F383_17805 [Gossypium arboreum] gb|KHG12148.1| hypothetical799004712 (11)ref|XP_010278591.1|1e-67PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera]
JMFF023A24Sequence369000893 (9)740004712 (11)ref|XP_010278591.1|4e-52PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera]
JMFF040C18Sequence537000893 (9)gb|KJB20721.1|3e-37hypothetical protein B456_003G161000 [Gossypium raimondii]734004712 (11)ref|XP_009801536.1|4e-54PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Nicotiana sylvestris]
JMFF050P15Sequence610000893 (9)gb|KJB20721.1|2e-33hypothetical protein B456_003G161000 [Gossypium raimondii]568004712 (11)gb|KJB39631.1|6e-34hypothetical protein B456_007G022500 [Gossypium raimondii]
JMSF039C14Sequence624000893 (9)gb|KJB20721.1|7e-40hypothetical protein B456_003G161000 [Gossypium raimondii]844004712 (11)ref|XP_009615319.1|2e-74PREDICTED: E3 ubiquitin-protein ligase At1g12760-like isoform X2 [Nicotiana tom

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF007E11+ CCAAACGCNTCATCCGCNGATTGC
JMFF050P15+ AGTAGAAGAGTTCAAACCCTCGCCGCCTTTACCAAACGCTTCATCCGCCGATTGC
JMSF039C14+ CCAAACGCTTCATCCGCCGATTGC
                      ____________________________________________________________
consensus AGTAGAAGAGTTCAAACCCTCGCCGCCTTTACCAAACGCTTCATCCGCCGATTGC
 
. : . : . : . : . : . :
JMFF007E11+ CATNTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF050P15+ CATCTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACA-CGCGTGCAGCACACAC
JMFF008C21+ CAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF040C18+ TGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF012I23+ GATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF013G20+ CTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMSF039C14+ CATCTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
                      ____________________________________________________________
consensus CATCTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
 
. : . : . : . : . : . :
JMFF007E11+ TGCAATGCGTACCNTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF050P15+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF008C21+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF040C18+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF012I23+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF013G20+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF012M22+ GCAATTCCGGNTGCTCATCCCGGNTC
JMSF039C14+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
                      ____________________________________________________________
consensus TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
 
. : . : . : . : . : . :
JMFF007E11+ AACACTAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF050P15+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF008C21+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF040C18+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF012I23+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF013G20+ AACACCAGCACCGCGGCGGCCAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF012M22+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMSF039C14+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
                      ____________________________________________________________
consensus AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
 
. : . : . : . : . : . :
JMFF007E11+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF050P15+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF008C21+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF040C18+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF012I23+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF013G20+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF012M22+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF023A24+ GCTCCGCCGCAGC
JMSF039C14+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
                      ____________________________________________________________
consensus GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
 
. : . : . : . : . : . :
JMFF007E11+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGAAG
JMFF050P15+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF008C21+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF040C18+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF012I23+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF013G20+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF012M22+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF023A24+ CTGGCGCACCAGCGCCGACGGCT-CCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAN
JMSF039C14+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
                      ____________________________________________________________
consensus CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
 
. : . : . : . : . : . :
JMFF007E11+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF050P15+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF008C21+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF040C18+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF012I23+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF013G20+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF012M22+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF023A24+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMSF039C14+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
                      ____________________________________________________________
consensus AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
 
. : . : . : . : . : . :
JMFF007E11+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF050P15+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF008C21+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF040C18+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF012I23+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF013G20+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF012M22+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF023A24+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMSF039C14+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
                      ____________________________________________________________
consensus ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
 
. : . : . : . : . : . :
JMFF007E11+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF050P15+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF008C21+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF040C18+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF012I23+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF013G20+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF012M22+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF023A24+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMSF039C14+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
                      ____________________________________________________________
consensus GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
 
. : . : . : . : . : . :
JMFF007E11+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGC
JMFF050P15+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF008C21+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF040C18+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF012I23+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF013G20+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF012M22+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF023A24+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMSF039C14+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
                      ____________________________________________________________
consensus AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
 
. : . : . : . : . : . :
JMFF050P15+ GTTTCGGATATGAAAAT
JMFF008C21+ GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAAC
JMFF040C18+ GTTTCGGATATGAAAAT
JMFF012I23+ GTTTCGGATATGAAAAT
JMFF013G20+ GTTTCGGATATGAAAAT
JMFF012M22+ GTTTCGGATATGAAAAT
JMFF023A24+ GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAAC
JMSF039C14+ GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAACACTACC
                      ____________________________________________________________
consensus GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAACACTACC