| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007E11 | Sequence | 559 | 000893 (9) | gb|KJB20721.1| | 5e-39 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 752 | 004712 (11) | ref|XP_010278591.1| | 2e-55 | PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera] |
| JMFF008C21 | Sequence | 564 | 000893 (9) | gb|KJB20721.1| | 5e-35 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 724 | 004712 (11) | ref|XP_010278589.1| | 8e-73 | PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X2 [Nelumbo nucifera] |
| JMFF012I23 | Sequence | 536 | 000893 (9) | gb|KJB20721.1| | 3e-37 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 732 | 004712 (11) | ref|XP_009801536.1| | 6e-52 | PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Nicotiana sylvestris] |
| JMFF012M22 | Sequence | 462 | 000893 (9) | gb|KJB20721.1| | 5e-21 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 574 | 004712 (11) | ref|XP_011463819.1| | 3e-38 | PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X2 [Fragaria vesca sub |
| JMFF013G20 | Sequence | 531 | 000893 (9) | gb|KHG00577.1| | 1e-30 | hypothetical protein F383_17805 [Gossypium arboreum] gb|KHG12148.1| hypothetical | 799 | 004712 (11) | ref|XP_010278591.1| | 1e-67 | PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera] |
| JMFF023A24 | Sequence | 369 | 000893 (9) | 740 | 004712 (11) | ref|XP_010278591.1| | 4e-52 | PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera] | |||
| JMFF040C18 | Sequence | 537 | 000893 (9) | gb|KJB20721.1| | 3e-37 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 734 | 004712 (11) | ref|XP_009801536.1| | 4e-54 | PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Nicotiana sylvestris] |
| JMFF050P15 | Sequence | 610 | 000893 (9) | gb|KJB20721.1| | 2e-33 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 568 | 004712 (11) | gb|KJB39631.1| | 6e-34 | hypothetical protein B456_007G022500 [Gossypium raimondii] |
| JMSF039C14 | Sequence | 624 | 000893 (9) | gb|KJB20721.1| | 7e-40 | hypothetical protein B456_003G161000 [Gossypium raimondii] | 844 | 004712 (11) | ref|XP_009615319.1| | 2e-74 | PREDICTED: E3 ubiquitin-protein ligase At1g12760-like isoform X2 [Nicotiana tom |
This contig is upended
. : . : . : . : . : . :
JMFF007E11+ CCAAACGCNTCATCCGCNGATTGC
JMFF050P15+ AGTAGAAGAGTTCAAACCCTCGCCGCCTTTACCAAACGCTTCATCCGCCGATTGC
JMSF039C14+ CCAAACGCTTCATCCGCCGATTGC
____________________________________________________________
consensus AGTAGAAGAGTTCAAACCCTCGCCGCCTTTACCAAACGCTTCATCCGCCGATTGC
. : . : . : . : . : . :
JMFF007E11+ CATNTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF050P15+ CATCTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACA-CGCGTGCAGCACACAC
JMFF008C21+ CAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF040C18+ TGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF012I23+ GATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMFF013G20+ CTCCAGAGAAACAGACACCGCGTGCAGCACACAC
JMSF039C14+ CATCTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
____________________________________________________________
consensus CATCTCCGCCGCCTCCTCTTGCGATACTCCAGAGAAACAGACACCGCGTGCAGCACACAC
. : . : . : . : . : . :
JMFF007E11+ TGCAATGCGTACCNTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF050P15+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF008C21+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF040C18+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF012I23+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF013G20+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
JMFF012M22+ GCAATTCCGGNTGCTCATCCCGGNTC
JMSF039C14+ TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
____________________________________________________________
consensus TGCAATGCGTACCCTACAATCCAAAGCCTGAGCGGCAATTCCGGCTGCTCATCCCGGCTC
. : . : . : . : . : . :
JMFF007E11+ AACACTAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF050P15+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF008C21+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF040C18+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF012I23+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF013G20+ AACACCAGCACCGCGGCGGCCAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMFF012M22+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
JMSF039C14+ AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
____________________________________________________________
consensus AACACCAGCACCGCGGCGG-CAATCAGCACGAACGCCAAGTTCCAAACGAGGTCGAGAAT
. : . : . : . : . : . :
JMFF007E11+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF050P15+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF008C21+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF040C18+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF012I23+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF013G20+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF012M22+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
JMFF023A24+ GCTCCGCCGCAGC
JMSF039C14+ GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
____________________________________________________________
consensus GACGACGGGCTTCGAGTACGCCCAATCGCTCTGCCGCTCGTCCATCTGCTCCGCCGCAGC
. : . : . : . : . : . :
JMFF007E11+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGAAG
JMFF050P15+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF008C21+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF040C18+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF012I23+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF013G20+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF012M22+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
JMFF023A24+ CTGGCGCACCAGCGCCGACGGCT-CCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAN
JMSF039C14+ CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
____________________________________________________________
consensus CTGGCGCACCAGCGCCGACGGCTCCCGCATCACCATCCCGCGACTGCCGGCTCGCCGGAG
. : . : . : . : . : . :
JMFF007E11+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF050P15+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF008C21+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF040C18+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF012I23+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF013G20+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF012M22+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMFF023A24+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
JMSF039C14+ AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
____________________________________________________________
consensus AACCCAGACGACGTCGCGGATGCTGTGTCGGCGCAGTGATGGGCGGGTTCCGGCATAGCC
. : . : . : . : . : . :
JMFF007E11+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF050P15+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF008C21+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF040C18+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF012I23+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF013G20+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF012M22+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMFF023A24+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
JMSF039C14+ ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
____________________________________________________________
consensus ATCGGCAGCGGCGGGAGTCATTAAAGGTGAGTTGGTGTAAGTAGGTGAAAACATTTTCAG
. : . : . : . : . : . :
JMFF007E11+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF050P15+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF008C21+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF040C18+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF012I23+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF013G20+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF012M22+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMFF023A24+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
JMSF039C14+ GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
____________________________________________________________
consensus GCGAATTTTGGATACAGTAAAATGCAGTACAACAAGAATGGAAAGATTATGATCCAGTGG
. : . : . : . : . : . :
JMFF007E11+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGC
JMFF050P15+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF008C21+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF040C18+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF012I23+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF013G20+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF012M22+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMFF023A24+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
JMSF039C14+ AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
____________________________________________________________
consensus AGTAGGCCGTACAGTAGCCAACTACTCCATGGTCGCAGGGAACAAGGAGATTGCAAGATT
. : . : . : . : . : . :
JMFF050P15+ GTTTCGGATATGAAAAT
JMFF008C21+ GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAAC
JMFF040C18+ GTTTCGGATATGAAAAT
JMFF012I23+ GTTTCGGATATGAAAAT
JMFF013G20+ GTTTCGGATATGAAAAT
JMFF012M22+ GTTTCGGATATGAAAAT
JMFF023A24+ GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAAC
JMSF039C14+ GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAACACTACC
____________________________________________________________
consensus GTTTCGGATATGAAAATGAGGGCTGAAATGAACAACGACACACAGATAGCAAACACTACC