| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019F13 | Sequence | 574 | 000886 (9) | ref|XP_009621404.1| | 236 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana tomentosiformis] | 737 | 000886 (9) | ref|XP_011093779.1| | 224 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Sesamum indicum] |
| JMFF046M19 | Sequence | 611 | 000886 (9) | ref|XP_009621404.1| | 235 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana tomentosiformis] | 600 | 000886 (9) | ref|XP_011093779.1| | 127 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Sesamum indicum] |
| JMFN029J12 | Sequence | 590 | 000886 (9) | ref|XP_011093779.1| | 130 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Sesamum indicum] | |||||
| JMSF005N23 | Sequence | 372 | 000886 (9) | ref|XP_009621404.1| | 154 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana tomentosiformis] | 353 | 000886 (9) | ref|XP_007012378.1| | 7e-18 | Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao] gb|EOY |
| JMSF038A17 | Sequence | 619 | 000886 (9) | ref|XP_009621404.1| | 235 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana tomentosiformis] | 889 | 000886 (9) | ref|XP_006582918.1| | 4e-86 | PREDICTED: uncharacterized protein LOC100794662 isoform X3 [Glycine max] |
This contig is upended
. : . : . : . : . : . :
JMFN029J12+ TTTCAAGTTAAATCATTAATCACAGAAACA
rJMFF046M19- GGGGCGTTTCAAGTTAAATCATTAATCACAGAAACA
____________________________________________________________
consensus GGGGCGTTTCAAGTTAAATCATTAATCACAGAAACA
. : . : . : . : . : . :
JMFN029J12+ TGCATATCCATCCTTACAAGACTAAAGGGAAGTATGTCCAAGTTTGAAAAGCTACTACAT
rJMFF046M19- TGCATATCCATCCTTACAAGACTAAAGGGAAGTATGTCCAAGTTTGAAAAGCTACTACAT
rJMFF019F13- AGACTAAAGGGAAGTATGTCCAAGTTTGAAAAGCTACTACAT
rJMSF038A17- GACTAAAGGGAAGTATGTCCAAGTTTGAAAAGCTACTACAT
____________________________________________________________
consensus TGCATATCCATCCTTACAAGACTAAAGGGAAGTATGTCCAAGTTTGAAAAGCTACTACAT
. : . : . : . : . : . :
JMFN029J12+ AGTAAATTATCCCTTCCTGATAAAAACAAGACCAAAAGGCCAGAGAGAAACTTCAATACA
rJMFF046M19- AGTAAATTATCCCTTCCTGATAAAAACAAGACCAAAAGGCCAGAGAGAAACTTCAATACA
rJMFF019F13- AGTAAATTATCCCTTCCTGATAAAAACAAGACCAAAAGGCCAGAGAGAAACTTCAATACA
rJMSF038A17- AGTAAATTATCCCTTCCTGATAAAAACAAGACCAAAAGGCCAGAGAGAAACTTCAATACA
____________________________________________________________
consensus AGTAAATTATCCCTTCCTGATAAAAACAAGACCAAAAGGCCAGAGAGAAACTTCAATACA
. : . : . : . : . : . :
JMFN029J12+ CATGCCTGCCTAGCTGATTGATATGGCGAGATGGACAATAGCTGAGCTCAACGCGGGTGG
rJMFF046M19- CATGCCTGCCTAGCTGATTGATATGGCGAGATGGACAATAGCTGAGCTCAACGCGGGTGG
rJMFF019F13- CATGCCTGCCTAGCTGATTGATATGGCGAGATGGACAATAGCTGAGCTCAACGCGGGTGG
rJMSF038A17- CATGCCTGCCTAGCTGATTGATATGGCGAGATGGACAATAGCTGAGCTCAACGCGGGTGG
____________________________________________________________
consensus CATGCCTGCCTAGCTGATTGATATGGCGAGATGGACAATAGCTGAGCTCAACGCGGGTGG
. : . : . : . : . : . :
JMFN029J12+ CAAATACAATAAGTTAAACCCAGCTCACACGTTGAGCTGAGCATCAGGGCCGTGCCCTCT
rJMFF046M19- CAAATACAATAAGTTAAACCCAGCTCACACGTTGAGCTGAGCATCAGGGCCGTGCCCTCT
rJMSF005N23- CTCT
rJMFF019F13- CAAATACAATAAGTTAAACCCAGCTCACACGTTGAGCTGAGCATCAGGGCCGTGCCCTCT
rJMSF038A17- CAAATACAATAAGTTAAACCCAGCTCACACGTTGAGCTGAGCATCAGGGCCGTGCCCTCT
____________________________________________________________
consensus CAAATACAATAAGTTAAACCCAGCTCACACGTTGAGCTGAGCATCAGGGCCGTGCCCTCT
. : . : . : . : . : . :
JMFN029J12+ TGTTACTGCACGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCTAGCGGGTGTGATTT
rJMFF046M19- TGTTACTGCACGATGGGCATTAGTACTGCTTTATGTGTTCAGCCCTAGCGGGTGTGATTT
rJMSF005N23- TGTTACTGCACGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCTAGCGGGTGTGATTT
rJMFF019F13- TGTTACTGCACGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCTAGCGGGTGTGATTT
rJMSF038A17- TGTTACTGCACGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCTAGCGGGTGTGATTT
____________________________________________________________
consensus TGTTACTGCACGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCTAGCGGGTGTGATTT
. : . : . : . : . : . :
JMFN029J12+ TCACGCACTTGCCATGGAACCACCTCTCGCATATGTCACAGCAAATCCAGAATACATCTG
rJMFF046M19- TCACGCACTTGCCATGGAACCACCTCTCGCATATGTCACAGCAAATCCAGAATACATCTG
rJMSF005N23- TCACGCACTTGNCATGGAACCACCTCTCGCATATGTCACAGCA
rJMFF019F13- TCACGCACTTGCCATGGAACCACCTCTCGCATATGTCACAGCAAATCCAGAATACATCTG
rJMSF038A17- TCACGCACTTGCCATGGAACCACCTCTCGCATATGTCACAGCAAATCCAGAATACATCTG
____________________________________________________________
consensus TCACGCACTTGCCATGGAACCACCTCTCGCATATGTCACAGCAAATCCAGAATACATCTG
. : . : . : . : . : . :
JMFN029J12+ TACCATAGTTCTCGCCACATGCCCCGCACAAGGTATCCCCGTGCTCATCCTCTTCCTCCT
rJMFF046M19- TACCATAGTTCTCGCCACATGCCCCGCACAAGGTATCCCCGTGCTCATCCTCTTCCTCCT
rJMFF019F13- TACCATAGTTCTCGCCACATGCCCCGCACAAGGTATCCCCGTGCTCATCCTCTTCCTCCT
rJMSF038A17- TACCATAGTTCTCGCCACATGCCCCGCACAAGGTATCCCCGTGCTCATCCTCTTCCTCCT
____________________________________________________________
consensus TACCATAGTTCTCGCCACATGCCCCGCACAAGGTATCCCCGTGCTCATCCTCTTCCTCCT
. : . : . : . : . : . :
JMFN029J12+ CCTCCTCCTCTTCTTCAAATCCATCCGCCTCTTCATCCTTCGGTTGAACCTTATTAGAGT
rJMFF046M19- CCTCCTCCTCTTCTTCAAATCCATCCGCCTCTTCATCCTTCGGTTGAACCTTATTAGAGT
rJMFF019F13- CCTCCTCCTCTTCTTCAAATCCATCCGCCTCTTCATCCTTCGGTTGAACCTTATTAGAGT
rJMSF038A17- CCTCCTCCTCTTCTTCAAATCCATCCGCCTCTTCATCCTTCGGTTGAACCTTATTAGAGT
JMFF019F13+ TAGAGT
JMFF046M19+ TCGGTTGAACCTTATNAGAGT
JMSF038A17+ TCGGTTGAACCTTATTAGAGT
____________________________________________________________
consensus CCTCCTCCTCTTCTTCAAATCCATCCGCCTCTTCATCCTTCGGTTGAACCTTATTAGAGT
. : . : . : . : . : . :
JMFN029J12+ ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
rJMFF046M19- ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
rJMFF019F13- ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
rJMSF038A17- ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
JMFF019F13+ ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
JMFF046M19+ ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
JMSF038A17+ ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
____________________________________________________________
consensus ATTTGCCCACTTTAGAGTTTGACTTCGATTTGCTGCTGCTATTGTTGGTGACTGATGATT
. : . : . : . : . : . :
JMFN029J12+ TGTCCTTGACTTGCTTTTTG
rJMFF046M19- TGTCCTTGACTTGCTTTTTGGCAG
rJMFF019F13- TGTCCTTGACTTGCTTTTTGGCAGCTCCAGTTACAACTTCAAAAAGTGTTGGAATTTCAT
rJMSF038A17- TGTCCTTGACTTGCTTTTTGGCAGCTCCAGTTACAACTTCAAAAAGTGTTGGAATTTCAT
JMFF019F13+ TGTCCTTGACTTGCTTTTTGGCAGCTCCAGTTACAACTTCAAAAAGTGTTGGAATTTCAT
JMFF046M19+ TGTCCTTGACTTGCTTTTTGGCAGCTCCAGTTACAACTTCAAAAAGTGTTGGAATTTCAT
JMSF038A17+ TGTCCTTGACTTGCTTTTTGGCAGCTCCAGTTACAACTTCAAAAAGTGTTGGAATTTCAT
____________________________________________________________
consensus TGTCCTTGACTTGCTTTTTGGCAGCTCCAGTTACAACTTCAAAAAGTGTTGGAATTTCAT
. : . : . : . : . : . :
rJMFF019F13- TTATCATACAGAAGAGACGTTTCCTCTCAGATTTGTCAAAACCGAATCTGGCACCAAAAT
rJMSF038A17- TTATCATACAGAAGAGACGTTTCCTCTCAGATTTGTCAAAACCGAATCTGGCACCAAAAT
JMFF019F13+ TTATCATACAGAAGAGACGTTTCCTCTCAGATTTGTCAAAACCGAATCTGGCACCAAAAT
JMFF046M19+ TTATCATACAGAAGAGACGTTTCCTCTCAGATTTGTCAAAACCGAATCTGGCACCAAAAT
JMSF038A17+ TTATCATACAGAAGAGACGTTTCCTCTCAGATTTGTCAAAACCGAATCTGGCACCAAAAT
____________________________________________________________
consensus TTATCATACAGAAGAGACGTTTCCTCTCAGATTTGTCAAAACCGAATCTGGCACCAAAAT
. : . : . : . : . : . :
rJMFF019F13- AGAAAGCAACTGAAAGTAGCCATGCGTCACTGTGGACAGCAACAAGAGCCAACCAGTCCC
rJMSF038A17- AGAAAGCAACTGAAAGTAGCCATGCGTCACTGTGGACAGCAACAAGAGCCAACCAGT-CC
JMFF019F13+ AGAAAGCAACTGAAAGTAGCCATGCGTCACTGTGGACAGCAACAAGAGCCAACCAGT-CC
JMFF046M19+ AGAAAGCAACTGAAAGTAGCCATGCGTCACTGTGGACAGCAACAAGAGCCAACCAGT-CC
JMSF005N23+ TGCGTCACTGTGGACAGCAACAAGAGCCAACCAGT-CC
JMSF038A17+ AGAAAGCAACTGAAAGTAGCCATGCGTCACTGTGGACAGCAACAAGAGCCAACCAGT-CC
____________________________________________________________
consensus AGAAAGCAACTGAAAGTAGCCATGCGTCACTGTGGACAGCAACAAGAGCCAACCAGT-CC
. : . : . : . : . : . :
rJMFF019F13- TTGTCTTGCATCCCATCTCTGG
rJMSF038A17- TTGTCTTGCATCCCATCTCTGGCAAAGTTAATACCTAATGCTGGCTCTGGAAGCTCAGGA
JMFF019F13+ TTGTCTTGCATCCCATCTCTGGCAAAGTTAATACCTAATGCTGGCTCTGGAAGCTCAGGA
JMFF046M19+ TTGTCTTGCATCCCATCTCTGGCAAAGTTAATACCTAATGCTGGCTCTGGAAGCTCAGGA
JMSF005N23+ TTGTCTTGCATCCCATCTCTGGCAAAGTTAATACCTAATGCTGGCTCTGGAAGCTCAGGA
JMSF038A17+ TTGTCTTGCATCCCATCTCTGGCAAAGTTAATACCTAATGCTGGCTCTGGAAGCTCAGGA
____________________________________________________________
consensus TTGTCTTGCATCCCATCTCTGGCAAAGTTAATACCTAATGCTGGCTCTGGAAGCTCAGGA
. : . : . : . : . : . :
rJMSF038A17- GGCACCTCTTCAGCAGGCAAATTAACTTCCCACTGTTCATTAGGAAATCCATAAAGGCAC
JMFF019F13+ GGCACCTCTTCAGCAGGCAAATTAACTTCCCACTGTTCATTAGGAAATCCATAAAGGCAC
JMFF046M19+ GGCACCTCTTCAGCAGGCAAATTAACTTCCCACTGTTCATTAGGAAATCCATAAAGGCAC
JMSF005N23+ GGCACCTCTTCAGCAGGCAAATTAACTTCCCACTGTTCATTAGGAAATCCATAAAGGCAC
JMSF038A17+ GGCACCTCTTCAGCAGGCAAATTAACTTCCCACTGTTCATTAGGAAATCCATAAAGGCAC
____________________________________________________________
consensus GGCACCTCTTCAGCAGGCAAATTAACTTCCCACTGTTCATTAGGAAATCCATAAAGGCAC
. : . : . : . : . : . :
rJMSF038A17- AGGTTTTCTTTCTCCGGGGTCACACTGCTGATAAAAATCCTCCACATCGG
JMFF019F13+ AGGTTTTCTTTCTCC-GGGTCACACTGCTGATAAAAATCCTCCACATCGGTAGTGAGGGC
JMFF046M19+ AGGTTTTCTTTCTCC-GGGTCACACTGCTGATAAAAATCCTCCACATCGGTAGTGAGGGC
JMSF005N23+ AGGTTTTCTTTCTCC-GGGTCACACTGCTGATAAAAATCCTCCACATCGGTAGTGAGGGC
JMSF038A17+ AGGTTTTCTTTCTCC-GGGTCACACTGCTGATAAAAATCCTCCACATCGGTAGTGAGGGC
____________________________________________________________
consensus AGGTTTTCTTTCTCC-GGGTCACACTGCTGATAAAAATCCTCCACATCGGTAGTGAGGGC
. : . : . : . : . : . :
JMFF019F13+ TTTGATCATTCCTTTACGGCGGCCCGTGTAATCCTTAAACACCTCCTCTACAGTTCGAGG
JMFF046M19+ TTTGATCATTCCTTTACGGCGGCCCGTGTAATCCTTAAACACCTCCTCTACAGTTCGAGG
JMSF005N23+ TTTGATCATTCCTTTACGGCGGCCCGTGTAATCCTTAAACACCTCCTCTACAGTTCGATG
JMSF038A17+ TTTGATCATTCCTTTACGGCGGCCCGTGTAATCCTTAAACACCTCCTCTACAGTTCGAGG
____________________________________________________________
consensus TTTGATCATTCCTTTACGGCGGCCCGTGTAATCCTTAAACACCTCCTCTACAGTTCGAGG
. : . : . : . : . : . :
JMFF019F13+ ATTATACTGTCCGCCTCCGTCCATTCCTCTCAACTCTGAAGAAAGAGAGCAGTGAGAGAG
JMFF046M19+ ATTATACTGTCCGCCTCCGTCCATT
JMSF005N23+ ATTATACTGTCCGCCTCCGTCCATTCCTCTCAACTCTGAAGAAAGAGAGCAGTGAGAGAG
JMSF038A17+ ATTATACTGTCCGCCTCCGTCCATTCCTCTCAACTCTGAAGAAAGAGAGCAGTGAGAGAG
____________________________________________________________
consensus ATTATACTGTCCGCCTCCGTCCATTCCTCTCAACTCTGAAGAAAGAGAGCAGTGAGAGAG
. : . : . : . : . : . :
JMFF019F13+ AAACTGTCACAAAACGAGAGCTTTTCCGTC
JMSF005N23+ AAACTGTCACAAAACGAGAGCTTTTCCGTC
JMSF038A17+ AAACTGTCACAAAACGAGAGCTTTTCCGTCGCTGAAGGCTGAAGCGGAACGAATATTTTC
____________________________________________________________
consensus AAACTGTCACAAAACGAGAGCTTTTCCGTCGCTGAAGGCTGAAGCGGAACGAATATTTTC