| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009I18 | Sequence | 368 | 000878 (7) | ref|XP_009604694.1| | 6e-20 | PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis] | 739 | 002960 (7) | ref|XP_007051457.1| | 8e-80 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
| JMSF016E14 | Sequence | 547 | 000878 (7) | ref|XP_009604694.1| | 1e-44 | PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis] | 794 | 002960 (7) | ref|XP_007051457.1| | 9e-80 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
| JMSF035C04 | Sequence | 666 | 000878 (7) | ref|XP_007051457.1| | 6e-68 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 730 | 002960 (7) | ref|XP_007219048.1| | 8e-74 | hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti |
| JMSF037C11 | Sequence | 669 | 000878 (7) | ref|XP_007051457.1| | 3e-68 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 770 | 002960 (7) | ref|XP_007051457.1| | 6e-80 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
| JMSF040G14 | Sequence | 641 | 000878 (7) | ref|XP_007051457.1| | 2e-63 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 864 | 002960 (7) | ref|XP_007051457.1| | 3e-81 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
| JMSF042P24 | Sequence | 729 | 000878 (7) | ref|XP_007051457.1| | 7e-78 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 719 | 002960 (7) | ref|XP_007219048.1| | 5e-66 | hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti |
| JMSF047O15 | Sequence | 593 | 000878 (7) | ref|XP_007051457.1| | 4e-53 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | |||||
This contig is upended
. : . : . : . : . : . :
JMSF042P24+ TTCAGGGAA
____________________________________________________________
consensus TTCAGGGAA
. : . : . : . : . : . :
JMSF042P24+ CTGGAACAAAGACTTGACCTGTTGGACTAAGCTCCAGTTTTCTTTAATGATCTCGAGGGA
JMSF035C04+ GAGGGA
JMSF037C11+ GAGGGA
____________________________________________________________
consensus CTGGAACAAAGACTTGACCTGTTGGACTAAGCTCCAGTTTTCTTTAATGATCTCGAGGGA
. : . : . : . : . : . :
JMSF042P24+ GCCCAGTTCAACAACTCCGGCGCCGGTCGGGATGCAGACCAGCGTCTGAATACCGTGGAT
JMSF035C04+ GCCCAGTTCAACAACTCCGGCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
JMSF040G14+ GCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
JMSF037C11+ GCCCAGTTCAACAACTCCGGCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
____________________________________________________________
consensus GCCCAGTTCAACAACTCCGGCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
. : . : . : . : . : . :
JMSF042P24+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF035C04+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF040G14+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF047O15+ TCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF016E14+ TCAACCA
JMSF037C11+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
____________________________________________________________
consensus CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
. : . : . : . : . : . :
JMSF042P24+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF035C04+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF040G14+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF047O15+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF016E14+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF037C11+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
____________________________________________________________
consensus AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
. : . : . : . : . : . :
JMSF042P24+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF035C04+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF040G14+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF047O15+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF016E14+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF037C11+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
____________________________________________________________
consensus CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
. : . : . : . : . : . :
JMSF042P24+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF035C04+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF040G14+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF047O15+ CTGGGTGCTNCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF016E14+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF009I18+ GACTGCTG
JMSF037C11+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
____________________________________________________________
consensus CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
. : . : . : . : . : . :
JMSF042P24+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF035C04+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF040G14+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF047O15+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF016E14+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF009I18+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF037C11+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
____________________________________________________________
consensus GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
. : . : . : . : . : . :
JMSF042P24+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF035C04+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF040G14+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF047O15+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF016E14+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF009I18+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF037C11+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
____________________________________________________________
consensus CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
. : . : . : . : . : . :
JMSF042P24+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF035C04+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF040G14+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF047O15+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF016E14+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF009I18+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF037C11+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
____________________________________________________________
consensus CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
. : . : . : . : . : . :
JMSF042P24+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF035C04+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF040G14+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF047O15+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF016E14+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF009I18+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF037C11+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
____________________________________________________________
consensus TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
. : . : . : . : . : . :
JMSF042P24+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF035C04+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF040G14+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF047O15+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF016E14+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF009I18+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF037C11+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
____________________________________________________________
consensus GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
. : . : . : . : . : . :
JMSF042P24+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGC
JMSF035C04+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGC
JMSF040G14+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
JMSF047O15+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGC
JMSF016E14+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
JMSF009I18+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
JMSF037C11+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
____________________________________________________________
consensus ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC