Contig 000878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009I18Sequence368000878 (7)ref|XP_009604694.1|6e-20PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis]739002960 (7)ref|XP_007051457.1|8e-80Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF016E14Sequence547000878 (7)ref|XP_009604694.1|1e-44PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis]794002960 (7)ref|XP_007051457.1|9e-80Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF035C04Sequence666000878 (7)ref|XP_007051457.1|6e-68Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614730002960 (7)ref|XP_007219048.1|8e-74hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti
JMSF037C11Sequence669000878 (7)ref|XP_007051457.1|3e-68Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614770002960 (7)ref|XP_007051457.1|6e-80Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF040G14Sequence641000878 (7)ref|XP_007051457.1|2e-63Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614864002960 (7)ref|XP_007051457.1|3e-81Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF042P24Sequence729000878 (7)ref|XP_007051457.1|7e-78Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614719002960 (7)ref|XP_007219048.1|5e-66hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti
JMSF047O15Sequence593000878 (7)ref|XP_007051457.1|4e-53Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042P24+ TTCAGGGAA
                      ____________________________________________________________
consensus TTCAGGGAA
 
. : . : . : . : . : . :
JMSF042P24+ CTGGAACAAAGACTTGACCTGTTGGACTAAGCTCCAGTTTTCTTTAATGATCTCGAGGGA
JMSF035C04+ GAGGGA
JMSF037C11+ GAGGGA
                      ____________________________________________________________
consensus CTGGAACAAAGACTTGACCTGTTGGACTAAGCTCCAGTTTTCTTTAATGATCTCGAGGGA
 
. : . : . : . : . : . :
JMSF042P24+ GCCCAGTTCAACAACTCCGGCGCCGGTCGGGATGCAGACCAGCGTCTGAATACCGTGGAT
JMSF035C04+ GCCCAGTTCAACAACTCCGGCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
JMSF040G14+ GCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
JMSF037C11+ GCCCAGTTCAACAACTCCGGCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
                      ____________________________________________________________
consensus GCCCAGTTCAACAACTCCGGCGCCGGTTGGGATGCAGACCAGCGTCTGAATACCGTGGAT
 
. : . : . : . : . : . :
JMSF042P24+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF035C04+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF040G14+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF047O15+ TCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
JMSF016E14+ TCAACCA
JMSF037C11+ CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
                      ____________________________________________________________
consensus CTGAGCCTCTTTAGCCCTCTCACAGTTATACATCTGGAGGCGATGGGCCCCACTCAACCA
 
. : . : . : . : . : . :
JMSF042P24+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF035C04+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF040G14+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF047O15+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF016E14+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
JMSF037C11+ AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
                      ____________________________________________________________
consensus AACCAAAGAACCCATACTAAATGCCTTTCCCGGAACCCCATCGCCGGCGGAGAAAGACCG
 
. : . : . : . : . : . :
JMSF042P24+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF035C04+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF040G14+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF047O15+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF016E14+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
JMSF037C11+ CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
                      ____________________________________________________________
consensus CGCGAGGGACATCACGTAGAACCACTCCGCATCGGTGATGAGGTCGCCGTTCTCCGAGTT
 
. : . : . : . : . : . :
JMSF042P24+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF035C04+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF040G14+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF047O15+ CTGGGTGCTNCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF016E14+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
JMSF009I18+ GACTGCTG
JMSF037C11+ CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
                      ____________________________________________________________
consensus CTGGGTGCTGCCGATCAGGGCTTGGATTCCACTGATCACTTTCTTCCTCTCCGACTGCTG
 
. : . : . : . : . : . :
JMSF042P24+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF035C04+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF040G14+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF047O15+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF016E14+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF009I18+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
JMSF037C11+ GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
                      ____________________________________________________________
consensus GGTAGAGTGAGAGGTTTGTACGACGACGGGGACGCCGCCGCCTCTGCCGGCTTTTGTCCC
 
. : . : . : . : . : . :
JMSF042P24+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF035C04+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF040G14+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF047O15+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF016E14+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF009I18+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
JMSF037C11+ CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
                      ____________________________________________________________
consensus CTGGAAAAAGCCGTCCCCCCAGGCCAAGAAGAGGCGGCCATCGTCGTCATTTGAGGTCTG
 
. : . : . : . : . : . :
JMSF042P24+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF035C04+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF040G14+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF047O15+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF016E14+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF009I18+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
JMSF037C11+ CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
                      ____________________________________________________________
consensus CCAGAAAATAGCGTAAGCCCAGCTGTCGGTCTGGGTTTTGAGGATGAATTGAAGCCTCTG
 
. : . : . : . : . : . :
JMSF042P24+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF035C04+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF040G14+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF047O15+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF016E14+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF009I18+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
JMSF037C11+ TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
                      ____________________________________________________________
consensus TTGAAGGGTTGAGTGATTGGGTTGAGAAAGAGACGCAGTTATGGAGGACGATGAAGACGA
 
. : . : . : . : . : . :
JMSF042P24+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF035C04+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF040G14+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF047O15+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF016E14+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF009I18+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
JMSF037C11+ GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
                      ____________________________________________________________
consensus GGTCACAATTAGTTCATCCATCAATTCTTGATTAGTTAGGTTTGTGTAGGCTGGGGCAAA
 
. : . : . : . : . : . :
JMSF042P24+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGC
JMSF035C04+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGC
JMSF040G14+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
JMSF047O15+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGC
JMSF016E14+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
JMSF009I18+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
JMSF037C11+ ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC
                      ____________________________________________________________
consensus ACAACAAGAAGAAGAAAATGGAGAAGAAGATAGATGATGAATTGCAAATGGAAGAAGCTC