Contig 000877:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005G16Sequence353000877 (4)ref|XP_009797306.1|1e-42PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv415011245 (4)ref|XP_009797306.1|7e-09PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv
JMSF017J15Sequence523000877 (4)ref|XP_009797306.1|6e-65PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv796011245 (4)ref|XP_009632053.1|9e-119PREDICTED: probable sphingolipid transporter spinster homolog 2, partial [Nicot
JMSF036N19Sequence642000877 (4)ref|XP_009797306.1|3e-95PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv643011245 (4)ref|XP_009797306.1|2e-47PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv
JMSF040H11Sequence671000877 (4)ref|XP_009797306.1|1e-95PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv925011245 (4)ref|XP_009632053.1|3e-96PREDICTED: probable sphingolipid transporter spinster homolog 2, partial [Nicot

Alignment

This contig is upended


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JMSF040H11+                                     AAAGCTTCAATCCAAAATGCCCAATGCCAAGTAA
                      ____________________________________________________________
consensus                                       AAAGCTTCAATCCAAAATGCCCAATGCCAAGTAA
 
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JMSF040H11+           GATAAGATCCAACCAATCCACCATAGACATAGCCAACTGCAATCCCAGATGGAATGCACA
JMSF036N19+                             CACCATAGACATAGCCAACTGCAATCCCAGATGGAATGCACA
                      ____________________________________________________________
consensus             GATAAGATCCAACCAATCCACCATAGACATAGCCAACTGCAATCCCAGATGGAATGCACA
 
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JMSF040H11+           TGTAGAATATTCCCAGCCATGCTGTTTTCTGCTCAACTGGGGCATTATCATCAATGAATG
JMSF036N19+           TGTAGAATATTCCCAGCCATGCTGTTTTCTGCTCAACTGGGGCATTATCATCAATGAATG
                      ____________________________________________________________
consensus             TGTAGAATATTCCCAGCCATGCTGTTTTCTGCTCAACTGGGGCATTATCATCAATGAATG
 
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JMSF040H11+           GAGCGGCAAGACTAATAAAAGAAGCTTCACCAACACCTACAAACATCCTGAATATTGTAA
JMSF017J15+                            AAAGAAGCTTCACCAACACCTACAAACATCCTGAATATTGTAA
JMSF036N19+           GAGCGGCAAGACTAATAAAAGAAGCTTCACCAACACCTACAAACATCCTGAATATTGTAA
                      ____________________________________________________________
consensus             GAGCGGCAAGACTAATAAAAGAAGCTTCACCAACACCTACAAACATCCTGAATATTGTAA
 
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JMSF040H11+           TTGACCAGAAGTTAAACGAAAATCCACAACCGGCAGTTGCCAAGGTCCAGACTGTCAGTC
JMSF017J15+           TTGACCAGAAGTTAAACGAAAATCCACAACCGGCAGTTGCCAAGGTCCAGACTGTCAGTC
JMSF036N19+           TTGACCAGAAGTTAAACGAAAATCCACAACCGGCAGTTGCCAAGGTCCAGACTGTCAGTC
                      ____________________________________________________________
consensus             TTGACCAGAAGTTAAACGAAAATCCACAACCGGCAGTTGCCAAGGTCCAGACTGTCAGTC
 
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JMSF040H11+           CAACTCCAATAAGCCTAAATGGATTTACACTTTTCGCCAAGGATGCAAATATTGGAGATG
JMSF017J15+           CAACTCCAATAAGCCTAAATGGATTTACACTTTTCGCCAAGGATGCAAATATTGGAGATG
JMSF005G16+                      AGCCTAAATGGATTTACACTTTTCGCCAAGGATGCAAATATTGGAGATG
JMSF036N19+           CAACTCCAATAAGCCTAAATGGATTTACACTTTTCGCCAAGGATGCAAATATTGGAGATG
                      ____________________________________________________________
consensus             CAACTCCAATAAGCCTAAATGGATTTACACTTTTCGCCAAGGATGCAAATATTGGAGATG
 
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JMSF040H11+           CCACAAGTAGCCCAACCATGAAAGCAGATGATATGACACCATCCTGAAAATTGTTCAAGT
JMSF017J15+           CCACAAGTAGCCCAACCATGAAAGCAGATGATATGACACCATCCTGAAAATTGTTCAAGT
JMSF005G16+           CCACAAGTAGCCCAACCATGAAAGCAGATGATATGACACCATCCTGAAAATTGTTCAAGT
JMSF036N19+           CCACAAGTAGCCCAACCATGAAAGCAGATGATATGACACCATCCTGAAAATTGTTCAAGT
                      ____________________________________________________________
consensus             CCACAAGTAGCCCAACCATGAAAGCAGATGATATGACACCATCCTGAAAATTGTTCAAGT
 
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JMSF040H11+           TAAAATCGCCCTGAATTCCACTGCCAGATGAACATGTACCACTATCACTACAACTTCTAG
JMSF017J15+           TAAAATCGCCCTGAATTCCACTGCCAGATGAACATGTACCACTATCGCTACAACTTCTAG
JMSF005G16+           TAAAATCGCCCTGAATTCCACTGCCAGATGAACATGTACCACTATCACTACAACTTCTAG
JMSF036N19+           TAAAATCGCCCTGAATTCCACTGCCAGATGAACATGTACCACTATCACTACAACTTCTAG
                      ____________________________________________________________
consensus             TAAAATCGCCCTGAATTCCACTGCCAGATGAACATGTACCACTATCACTACAACTTCTAG
 
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JMSF040H11+           GGCTCCCATTGACACCATTGCTTGCTATAGCTCCACGGTCCACATAATTTAGTAAGTTGA
JMSF017J15+           GGCTCCCATTGACACCATTGCTTGCTATAGCTCCACGGTCCACATAATTTAGTAAGTTGA
JMSF005G16+           GGCTCCCATTGACACCATTGCTTGCTATAGCTCCACGGTCCACATAATTTAGTAAGTTGA
JMSF036N19+           GGCTCCCATTGACACCATTGCTTGCTATAGCTCCACGGTCCACATAATTTAGTAAGTTGA
                      ____________________________________________________________
consensus             GGCTCCCATTGACACCATTGCTTGCTATAGCTCCACGGTCCACATAATTTAGTAAGTTGA
 
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JMSF040H11+           TTAAGCAGAAAATTGCAAGCAACCTTTTGGGAGTGAACCAGGAAGGTTGGGGAGCTAG  
JMSF017J15+           TTAAGCAGAAAATTGCAAGCAACCTTTTGGGAGTGAACCAGGAAGGTTGGGGAGCTAGTA
JMSF005G16+           TTAAGCAGAAAATTGCAAGCAACCTTTTGGGAGTGAACCAGGAAGGTTGGGGAGCTAGTA
JMSF036N19+           TTAAGCAGAAAATTGCAAGCAACCTTTTGGGAGTGAACCAGGAAGGTTGGGGAGCTAGTA
                      ____________________________________________________________
consensus             TTAAGCAGAAAATTGCAAGCAACCTTTTGGGAGTGAACCAGGAAGGTTGGGGAGCTAGTA
 
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JMSF017J15+           ACGAAGGTGTTGGAGCTAAAGCCATATCTGAATTCTGATGACTCCAGGCCTAGACAGAGC
JMSF005G16+           ACGAAGGTGTTGGAGCTAAAGCCATATCTGAATTCTGATGACTCCAGGCCTAGACAGAGC
JMSF036N19+           ACGAAGGTGTTGGAGCTAAAGCCATATCTGAATTCTGATGACTCCAGGCCTAGACAGAGC
                      ____________________________________________________________
consensus             ACGAAGGTGTTGGAGCTAAAGCCATATCTGAATTCTGATGACTCCAGGCCTAGACAGAGC
 
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JMSF017J15+           TATAGTTGGACTTAGCCTGATTTCCACTTTTGATTCGTCTACGGGCATTCTTCTAAC   
JMSF005G16+           TAT                                                         
JMSF036N19+           TATAGTTGGACTTAGCCTGATTTCCACTTTTGATTCGTCTACGGGCATTCTTCTAACCCC
                      ____________________________________________________________
consensus             TATAGTTGGACTTAGCCTGATTTCCACTTTTGATTCGTCTACGGGCATTCTTCTAACCCC