Contig 000876:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031P17Sequence649000876 (4)602011353 (4)ref|XP_009598306.1|3e-07PREDICTED: la-related protein 6B [Nicotiana tomentosiformis]
JMSF036M08Sequence680000876 (4)746011353 (4)ref|XP_007026488.1|1e-32RNA-binding protein, putative isoform 2 [Theobroma cacao] gb|EOY06990.1| RNA-bin
JMSF048M20Sequence675000876 (4)767011353 (4)ref|XP_009598306.1|2e-16PREDICTED: la-related protein 6B [Nicotiana tomentosiformis]
JMSF052E05Sequence730000876 (4)967011353 (4)ref|XP_007026488.1|3e-88RNA-binding protein, putative isoform 2 [Theobroma cacao] gb|EOY06990.1| RNA-bin

Alignment

This contig is upended


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JMSF052E05+                                                             GAGGGGCATA
                      ____________________________________________________________
consensus                                                               GAGGGGCATA
 
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JMSF052E05+           GAGATAGTGACTCTGGACTGGCACGTGGGCGGGGATTTGGTGGAAGGCACTACCTCCCGG
JMSF048M20+                                                          CACTACCTCCCGG
JMSF036M08+                                                          CACTACCTCCCGG
                      ____________________________________________________________
consensus             GAGATAGTGACTCTGGACTGGCACGTGGGCGGGGATTTGGTGGAAGGCACTACCTCCCGG
 
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JMSF052E05+           TGTGGTGTAAACGTGTAGCAACGTTTGGTTATGCTGAGGAATCACGAGCCCTGGTAAAGC
JMSF048M20+           TGTGGTGTAAACGTGTAGCAACGTTTGGTTATGCTGAGGAATCACGAGCCCTGGTAAAGC
JMSF031P17+                      CGTGTAGCAACGTTTGGTTATGCTGAGGAATCACGAGCCCTGGTAAAGC
JMSF036M08+           TGTGGTGTAAACGTGTAGCAACGTTTGGTTATGCTGAGGAATCACGAGCCCTGGTAAAGC
                      ____________________________________________________________
consensus             TGTGGTGTAAACGTGTAGCAACGTTTGGTTATGCTGAGGAATCACGAGCCCTGGTAAAGC
 
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JMSF052E05+           CGATGACGACGAAGACGGAGAAAGCGCTGGAGGAGCCGGAGATGGTGGCAGAGACCCCGA
JMSF048M20+           CGATGACGACGAAGACGGAGAAAGCGCTGGAGGAGCCGGAGATGGTGGCAGAGACCCCGA
JMSF031P17+           CGATGACGACGAAGACGGAGAAAGCGCTGGAGGAGCCGGAGATGGTGGCAGAGACCCCGA
JMSF036M08+           CGATGACGACGAAGACGGAGAAAGCGCTGGAGGAGCCGGAGATGGTGGCAGAGACCCCGA
                      ____________________________________________________________
consensus             CGATGACGACGAAGACGGAGAAAGCGCTGGAGGAGCCGGAGATGGTGGCAGAGACCCCGA
 
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JMSF052E05+           TGCCGCAGACGTCAGCGAAGGAGAAGTCGCACTTCTAGGGACAAATGCAGGAGCTCCGGC
JMSF048M20+           TGCCGCAGACGTCAGCGAAGGAGAAGTCGCACTTCTAGGGACAAATGCAGGAGCTCCGGC
JMSF031P17+           TGCCGCAGACGTCAGCGAAGGAGAAGTCGCACTTCTAGGGACAAATGCAGGAGCTCCGGC
JMSF036M08+           TGCCGCAGACGTCAGCGAAGGAGAAGTCGCACTTCTAGGGACAAATGCAGGAGCTCCGGC
                      ____________________________________________________________
consensus             TGCCGCAGACGTCAGCGAAGGAGAAGTCGCACTTCTAGGGACAAATGCAGGAGCTCCGGC
 
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JMSF052E05+           GTTCAGCTTGCTGAGGGAGAGGTTCCTGGAGAGGGACGGCGGCAACTGATCGGACGGTGG
JMSF048M20+           GTTCAGCTTGCTGAGGGAGAGGTTCCTGGAGAGGGACGGCGGCAACTGATCGGACGGTGG
JMSF031P17+           GTTCAGCTTGCTGAGGGAGAGGTTCCTGGAGAGGGACGGCGGCAACTGATCGGACGGTGG
JMSF036M08+           GTTCAGCTTGCTGAGGGAGAGGTTCCTGGAGAGGGACGGCGGCAACTGATCGGACGGTGG
                      ____________________________________________________________
consensus             GTTCAGCTTGCTGAGGGAGAGGTTCCTGGAGAGGGACGGCGGCAACTGATCGGACGGTGG
 
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JMSF052E05+           AGAAACAGAGGTGGATGACTCTACCGGAAGATCGAGCGGCGGCGGCGACGACGACGGCGC
JMSF048M20+           AGAAACAGAGGTGGATGACTCTACCGGAAGATCGAGCGGCGGCGGCGACGACGACGGCGC
JMSF031P17+           AGAAACAGAGGTGGATGACTCTACCGGAAGATCGAGCGGCGGCGGCGACGACGACGGCGC
JMSF036M08+           AGAAACAGAGGTGGATGACTCTACCGGAAGATCGAGCGGCGGCGGCGACGACGACGGCGC
                      ____________________________________________________________
consensus             AGAAACAGAGGTGGATGACTCTACCGGAAGATCGAGCGGCGGCGGCGACGACGACGGCGC
 
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JMSF052E05+           TACTGTTGAACTTAGGGCTCCAATTACTGATTCCTGTGAATCTCCAGCTGCGTCCAGTGC
JMSF048M20+           TACTGTTGAACTTAGGGCTCCAATTACTGATTCCTGTGAATCTCCAGCTGCGTCCAGTGC
JMSF031P17+           TACTGTTGAACTTAGGGCTCCAATTACTGATTCCTGTGAATCTCCAGCTGCGTCCAGTGC
JMSF036M08+           TACTGTTGAACTTAGGGCTCCAATTACTGATTCCTGTGAATCTCCAGCTGCGTCCAGTGC
                      ____________________________________________________________
consensus             TACTGTTGAACTTAGGGCTCCAATTACTGATTCCTGTGAATCTCCAGCTGCGTCCAGTGC
 
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JMSF052E05+           TGATGATGATACAGACAACTCATCTTGAGCCACCTTTTCTGATAATTCGAATCGAACGTT
JMSF048M20+           TGATGATGATACAGACAACTCATCTTGAGCCATCTTTTCTGATAATTCGAATCGAACGTT
JMSF031P17+           TGATGATGATACAGACAACTCATCTTGAGCCATCTTTTCTGATAATTCGAATCGAACGTT
JMSF036M08+           TGATGATGATACAGACAACTCATCTTGAGCCATCTTTTCTGATAATTCGAATCGAACGTT
                      ____________________________________________________________
consensus             TGATGATGATACAGACAACTCATCTTGAGCCATCTTTTCTGATAATTCGAATCGAACGTT
 
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JMSF052E05+           TTTGTTTTTAGTAACTTTTATTTTTCCTTCTTTGTGTCTTTCTCGGAGGTGGATCGACGA
JMSF048M20+           TTTGTTTTTAGTAACTTTTATTTTTCCTTCTTTGTGTCTTTCTCGGAGGTGGATCGACGA
JMSF031P17+           TTTGTTTTTAGTAACTTTTATTTTTCCTTCTTTGTGTCTTTCTCGGAGGTGGATCGACGA
JMSF036M08+           TTTGTTTTTAGTAACTTTTATTTTTCCTTCTTTGTGTCTTTCTCGGAGGTGGATCGACGA
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consensus             TTTGTTTTTAGTAACTTTTATTTTTCCTTCTTTGTGTCTTTCTCGGAGGTGGATCGACGA
 
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JMSF052E05+           CCAACAGATCCAACAGTAATAGTAAAAGTAGTAAATCCTAGGGTTTAGCACCAGGGATAG
JMSF048M20+           CCAACAGATCCAACAGTAATAGTAAAAGTAGTAAATCCTAGGGTTTAGCACCAGGGATAG
JMSF031P17+           CCAACAGATCCAACAGTAATAGTAAAAGTAGTAAATCCTAGGGTTTAGCACCAGGGATAG
JMSF036M08+           CCAACAGATCCAACAGTAATAGTAAAAGTAGTAAATCCTAGGGTTTAGCACCAGGGATAG
                      ____________________________________________________________
consensus             CCAACAGATCCAACAGTAATAGTAAAAGTAGTAAATCCTAGGGTTTAGCACCAGGGATAG
 
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JMSF052E05+           GGGAGATTAAGGCGGAGAAGGGGATATCTTCCCTGCGATTTTCCCTTGAGTAGCGGTGAG
JMSF048M20+           GGGAGATTAAGGCGGAGAAGGGGATATCTTCCCTGCGATTTTCCCTTGAGTAGCGGTGAG
JMSF031P17+           GGGAGATTAAGGCGGAGAAGGGGATATCTTCCCTGCGATTTTCCCTTGAGTAGCGGTTAG
JMSF036M08+           GGGAGATTAAGGCGGAGAAGGGGATATCTTCCCTGCGATTTTCCCTTGAGTAGCGGTGAG
                      ____________________________________________________________
consensus             GGGAGATTAAGGCGGAGAAGGGGATATCTTCCCTGCGATTTTCCCTTGAGTAGCGGTGAG
 
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JMSF052E05+           AGCTGACTGAGCTGATCAGAGACACTGGGACAGGGAGAAGACGATGGAGAGAAATTC   
JMSF048M20+           AGCTGACTGAGCTGATCAGAGACACTGGGACAGGGAGAAGACGATGGAGAGAAATTC   
JMSF031P17+           AGCTGACTGAGCTGATCAGAGACACTGGGACAGGGAGAAGACGATGGAGAGAAATTC   
JMSF036M08+           AGCTGACTGAGCTGATCAGAGACACTGGGACAGGGAGAAGACGATGGAGAGAAATTCTCC
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consensus             AGCTGACTGAGCTGATCAGAGACACTGGGACAGGGAGAAGACGATGGAGAGAAATTCTCC