clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS015A11 | Sequence | 459 | 000868 (5) | ref|XP_009594520.1| | 3e-15 | PREDICTED: sialidase isoform X2 [Nicotiana tomentosiformis] | |||||
JMSF015O18 | Sequence | 251 | 000868 (5) | ref|XP_009772873.1| | 1e-04 | PREDICTED: cell wall protein RBR3 isoform X2 [Nicotiana sylvestris] | 751 | 012566 (3) | ref|XP_009594511.1| | 3e-75 | PREDICTED: cell wall protein RBR3 isoform X1 [Nicotiana tomentosiformis] |
JMSF036A11 | Sequence | 646 | 000868 (5) | ref|XP_009594520.1| | 1e-36 | PREDICTED: sialidase isoform X2 [Nicotiana tomentosiformis] | 764 | 023580 | ref|XP_009594511.1| | 4e-78 | PREDICTED: cell wall protein RBR3 isoform X1 [Nicotiana tomentosiformis] |
JMSF044G21 | Sequence | 790 | 000868 (5) | ref|XP_006353835.1| | 3e-47 | PREDICTED: putative GPI-anchored protein PB15E9.01c-like [Solanum tuberosum] | 732 | 012566 (3) | ref|XP_009594511.1| | 1e-75 | PREDICTED: cell wall protein RBR3 isoform X1 [Nicotiana tomentosiformis] |
JMSF051G18 | Sequence | 714 | 000868 (5) | ref|XP_006353835.1| | 3e-36 | PREDICTED: putative GPI-anchored protein PB15E9.01c-like [Solanum tuberosum] | 709 | 012566 (3) | ref|XP_009594520.1| | 3e-74 | PREDICTED: sialidase isoform X2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF044G21+ GAAGATG
____________________________________________________________
consensus GAAGATG
. : . : . : . : . : . :
JMSF044G21+ AAGAGCGACTTGAAGGGGTAGAGGACCGAATATAGGATGACACAGAAGCAGAGCTCGTGT
JMSF051G18+ TCGTGT
____________________________________________________________
consensus AAGAGCGACTTGAAGGGGTAGAGGACCGAATATAGGATGACACAGAAGCAGAGCTCGTGT
. : . : . : . : . : . :
JMSF044G21+ TTAGAATATTAGTTGATTTATTTGAGTAAGTACTAAACTGGTTGCTAGAGACAGAGGAAC
JMSF051G18+ TTAGAATATTAGTTGATTTATTTGAGTAAGTACTAAACTGGTTGCTAGAGACAGAGGAAC
____________________________________________________________
consensus TTAGAATATTAGTTGATTTATTTGAGTAAGTACTAAACTGGTTGCTAGAGACAGAGGAAC
. : . : . : . : . : . :
JMSF044G21+ GAGTTACTGAACTGCTGCGTGCTGGTCTTGCATTATGGTTGCTCTCTGAATGTGAAACTG
JMSF051G18+ GAGTTACTGAACTGCTGCGTGCTGGTCTTGCATTATGGTTGCTCTCTGAATGTGAAACTG
____________________________________________________________
consensus GAGTTACTGAACTGCTGCGTGCTGGTCTTGCATTATGGTTGCTCTCTGAATGTGAAACTG
. : . : . : . : . : . :
JMSF044G21+ AAAGCCTTGAAGCCTTAGTTGTGGAGACTGATCTGGCCAAGGAGCTACTTCTTGGAGCTA
JMSF051G18+ AAAGCCTTGAAGCCTTAGTTGTGGAGACTGATCTGGCCAAGGAGCTACTTCTTGGAGCTA
JMSF036A11+ TTAGTTGTGGAGACTGATCTGGCCAAGGAGCTACTTCTTGGAGCTA
____________________________________________________________
consensus AAAGCCTTGAAGCCTTAGTTGTGGAGACTGATCTGGCCAAGGAGCTACTTCTTGGAGCTA
. : . : . : . : . : . :
JMSF044G21+ CTTGGACCCGTTGAGGTTCATTTCCGATCAATGAAGGAACTAGAGGAGTCTCTGGAGGAG
JMSF051G18+ CTTGGACCCGTTGAGGTTCATTTCCGATCAATGAAGGAACTAGAGGAGTCTCTGGAGGAG
JMSF036A11+ CTTGGACCCGTTGAGGTTCATTTCCGATCAATGAAGGAACTAGAGGAGTCTCTGGAGGAG
____________________________________________________________
consensus CTTGGACCCGTTGAGGTTCATTTCCGATCAATGAAGGAACTAGAGGAGTCTCTGGAGGAG
. : . : . : . : . : . :
JMSF044G21+ TTAGAAGCCAATCATAATCATTCTTTCCTCCCTCAGTAGATGATAACAGATCATCCAATC
JMSF051G18+ TTAGAAGCCAATCATAATCATTCTTTCCTCCCTCAGTAGATGATAACAGATCATCCAATC
JMSF036A11+ TTAGAAGCCAATCATAATCATTCTTTCCTCCCTCAGTAGATGATAACAGATCATCCAATC
____________________________________________________________
consensus TTAGAAGCCAATCATAATCATTCTTTCCTCCCTCAGTAGATGATAACAGATCATCCAATC
. : . : . : . : . : . :
JMSF044G21+ AATTCTTCCCCACCTTTGCTGATCCAACTGAAAGTCTTCCCAGTTTAACGGAAACGTCGG
JMSF051G18+ CATTCTTCCCCACCTTTGCTGATCCAACTGAAAGT-------------------CGTCGG
JMFS015A11+ CGTCGG
JMSF036A11+ CATTCTTCCCCACCTTTGCTGATCCAACTGAAAGTCTTCCCAGTTTAACGGAAACGTCGG
____________________________________________________________
consensus CATTCTTCCCCACCTTTGCTGATCCAACTGAAAGTCTTCCCAGTTTAACGGAAACGTCGG
. : . : . : . : . : . :
JMSF044G21+ ACTCGTCGGAGTTGACAACGGAGACGCTGCGGCGAGTTCTGGAGAAGAGATCCAAGGAGT
JMSF051G18+ ACTCGTCGGAGTTGACAACGGAGACGCTGCGGCGAGTTCTGGAGAAGAGATCCAAGGAGT
JMFS015A11+ ACTCGTCGGAGTTGACAACGGAGACGCTGCGGCGAGTTCTGGAGAAGAGATCCAAGGAGT
JMSF036A11+ ACTCGTCGGAGTTGACAACGGAGACGCTGCGGCGAGTTCTGGAGAAGAGATCCAAGGAGT
____________________________________________________________
consensus ACTCGTCGGAGTTGACAACGGAGACGCTGCGGCGAGTTCTGGAGAAGAGATCCAAGGAGT
. : . : . : . : . : . :
JMSF044G21+ CATCGGAGGGGTCTTGGTTGGAGGCTCCATTGACGCTAAGGCCACGCCGGAGCTGCGGTG
JMSF051G18+ CATCGGAGGGGTCTTGGTTGGAGGCTCCATTGACGCTAAGGCCACGCCGGAGCTGCGGTG
JMFS015A11+ CATCGGAGGGGTCTTGGTTGGAGGCTCCATTGACGCTAAGGCCACGCCGGAGCTGCGGTG
JMSF015O18+ GGGTCTTGGTTGGAGGCTCCATTGACGCTAAGGCCACGCCGGAGCTGCGGTG
JMSF036A11+ CATCGGAGGGGTCTTGGTTGGAGGCTCCATTGACGCTAAGGCCACGCCGGAGCTGCGGTG
____________________________________________________________
consensus CATCGGAGGGGTCTTGGTTGGAGGCTCCATTGACGCTAAGGCCACGCCGGAGCTGCGGTG
. : . : . : . : . : . :
JMSF044G21+ CCACCGGAAAACTCTTCCCGCCTCCGATCATAGAGTCCCTAAAGCTCCGATTCATCTCGT
JMSF051G18+ CCACCGGAAAACTCTTCCCGCCTCCGATCATAGAGTCCCTAAAGCTCCGATTCATCTCGT
JMFS015A11+ CCACCGGAAAACTCTTCCCGCCTCCGATCATAGAGTCCCTAAAGCTCCGATTCATCTCGT
JMSF015O18+ CCACCGGAAAACTCTTCCCGCCTCCGATCATAGAGTCCCTAAAGCTCCGATTCATCTCGT
JMSF036A11+ CCACCGGAAAACTCTTCCCGCCTCCGATCATAGAGTCCCTAAAGCTCCGATTCATCTCGT
____________________________________________________________
consensus CCACCGGAAAACTCTTCCCGCCTCCGATCATAGAGTCCCTAAAGCTCCGATTCATCTCGT
. : . : . : . : . : . :
JMSF044G21+ ATCAATCAGTGGCGGTAATCACTCCAGCATTATGAGTAATAGAAGAATTTGTGAGGCTCG
JMSF051G18+ ATCAATCAGTGGCGGTAATCACTCCAGCATTATGAGTAATAGAAGAATTTGTGAGGCTCG
JMFS015A11+ ATCAATCAGTGGCGGTAATCACTCCAGCATTATGAGTAATAGAAGAATTTGTGAGGCTCG
JMSF015O18+ ATCAATCAGTGGCGGTAATCACTCCAGCATTATGAGTAATAGAAGAATTTGTGAGGCTCG
JMSF036A11+ ATCAATCAGTGGCGGTAATCACTCCAGCATTATGAGTAATAGAAGAATTTGTGAGGCTCG
____________________________________________________________
consensus ATCAATCAGTGGCGGTAATCACTCCAGCATTATGAGTAATAGAAGAATTTGTGAGGCTCG
. : . : . : . : . : . :
JMSF044G21+ GCTAGTGCGCCGAACGGACCGGGAAGCCCGAGTCTCCGGCGAGGTTGTAGATTGGATCTG
JMSF051G18+ GCTAGTGCGCCGAACGGACCGGGAAGCCCGAGTCTCCGGCGAGGTTGTAGATTGGATCTG
JMFS015A11+ GCTAGTGCGCCGAACGGACCGGGAAGCCCGAGTCTCCGGCGAGGTTGTAGATTGGATCTG
JMSF015O18+ GCTAGTGCGCCGAACGGACCGGGAAGCCCGAGTCTCCGGCGAGGTTGTAGATTGGATCTG
JMSF036A11+ GCTAGTGCGCCGAACGGACCGGGAAGCCCGAGTCTCCGGCGAGGTTGTAGATTGGATCTG
____________________________________________________________
consensus GCTAGTGCGCCGAACGGACCGGGAAGCCCGAGTCTCCGGCGAGGTTGTAGATTGGATCTG
. : . : . : . : . : . :
JMSF044G21+ TGAGAATGAGAAAAATGTGAGGGAGCTTGGAAAGAGGAAGGGGAAGGAGGCAAAAGCATG
JMSF051G18+ TGAGAATGAGAAAAATGTGAGGGAGCTTGGAAAGAGGAAGGGGAAGGAGGCAAAAGCATG
JMFS015A11+ TGAGAATGAGAAAAATGTGAGGGAGCTTGGAAAGAGGAAGGGGAAGGAGGCAAAAGCATG
JMSF015O18+ TGAGAATGAGAAAAATGT
JMSF036A11+ TGAGAATGAGAAAAATGTGAGGGAGCTTGGAAAGAGGAAGGGGAAGGAGGCAAAAGCATG
____________________________________________________________
consensus TGAGAATGAGAAAAATGTGAGGGAGCTTGGAAAGAGGAAGGGGAAGGAGGCAAAAGCATG
. : . : . : . : . : . :
JMSF044G21+ T
JMSF051G18+ T
JMFS015A11+ T
JMSF036A11+ TTACGCATACTAACAACTGACAGGCAGGTAAGGAAGACAACTCTCTTTCTCTCTCTCTCC
____________________________________________________________
consensus TTACGCATACTAACAACTGACAGGCAGGTAAGGAAGACAACTCTCTTTCTCTCTCTCTCC