Contig 000865:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035L20Sequence658000865 (2)emb|CDP01863.1|2e-29unnamed protein product [Coffea canephora]758023577ref|XP_009611040.1|105PREDICTED: uncharacterized protein LOC104104610 [Nicotiana tomentosiformis]
JMSF040B07Sequence661000865 (2)emb|CDP01863.1|2e-29unnamed protein product [Coffea canephora]492017235ref|XP_011071503.1|2e-48PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich SC35-like splicing factor

Alignment

This contig is upended


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JMSF040B07+                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMSF040B07+           GTGTCAACAGAGCTTTTGGTCCAAAATGCAAATATATATGAATCCAATACCTCCCATCTT
JMSF035L20+             GTCAACAGAGCTTTTGGTCCAAAATGCAAATATATATGAATCCAATACCTCCCATCTT
                      ____________________________________________________________
consensus             GTGTCAACAGAGCTTTTGGTCCAAAATGCAAATATATATGAATCCAATACCTCCCATCTT
 
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JMSF040B07+           GCCACATTATCAAGTTGATATATCTTTAGAGTTCTGCTTGTAGCAGGCTCAAGTATTCTA
JMSF035L20+           GCCACATTATCAAGTTGATATATCTTTAGAGTTCTGCTTGTAGCAGGCTCAAGTATTCTA
                      ____________________________________________________________
consensus             GCCACATTATCAAGTTGATATATCTTTAGAGTTCTGCTTGTAGCAGGCTCAAGTATTCTA
 
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JMSF040B07+           ATCCCATCAAGTCCAATCTGACATAGCACGTCCATGTCAGTCTGGCCATGGAAAACTCTC
JMSF035L20+           ATCCCATCAAGTCCAATCTGACATAGCACGTCCATGTCAGTCTGGCCATGGAAAACTCTC
                      ____________________________________________________________
consensus             ATCCCATCAAGTCCAATCTGACATAGCACGTCCATGTCAGTCTGGCCATGGAAAACTCTC
 
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JMSF040B07+           AGAACCCTTCTATTCCTTCCCACCTGGAATATTAATAGGTCGTCCATAATCATCAAATAA
JMSF035L20+           AGAACCCTTCTATTCCTTCCCACCTGGAATATTAATAGGTCGTCCATAATCATCAAATAA
                      ____________________________________________________________
consensus             AGAACCCTTCTATTCCTTCCCACCTGGAATATTAATAGGTCGTCCATAATCATCAAATAA
 
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JMSF040B07+           CACTTCACTGGATAACTCCGATCTACTACCACCATATGTATCGGCTTTTCCCAGCCGGTG
JMSF035L20+           CACTTCACTGGATAACTCCGATCTACTACCACCATATGTATCGGCTTTTCCCAGCCGGTG
                      ____________________________________________________________
consensus             CACTTCACTGGATAACTCCGATCTACTACCACCATATGTATCGGCTTTTCCCAGCCGGTG
 
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JMSF040B07+           CCTTTTTAGAATTACTCCACTGATTGCTCATCTGAAATCAACACAGAAAAAAGTCAAGAA
JMSF035L20+           CCTTTTTAGAATTACTCCACTGATTGCTCATCTGAAATCAACACAGAAAAAAGTCAAGAA
                      ____________________________________________________________
consensus             CCTTTTTAGAATTACTCCACTGATTGCTCATCTGAAATCAACACAGAAAAAAGTCAAGAA
 
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JMSF040B07+           CTCCACACTAACACTTACGAACCTATACATCCGCACAGGTGCGTAAAAATAACTATCACA
JMSF035L20+           CTCCACACTAACACTTACGAACCTATACATCCGCACAGGTGCGTAAAAATAACTATCACA
                      ____________________________________________________________
consensus             CTCCACACTAACACTTACGAACCTATACATCCGCACAGGTGCGTAAAAATAACTATCACA
 
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JMSF040B07+           TAAAGAATTTAGGGATTAATGAAATTATGATTTAGGGATAAATAGAATTAAGATTTTAGG
JMSF035L20+           TAAAGAATTTAGGGATTAATGAAATTATGATTTAGGGATAAATAGAATTAAGATTTTAGG
                      ____________________________________________________________
consensus             TAAAGAATTTAGGGATTAATGAAATTATGATTTAGGGATAAATAGAATTAAGATTTTAGG
 
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JMSF040B07+           GATTAGGGTTTAAGATTTGAGTAATAGAACTTGTAGCGCAGCAGAGACGGCGATGTCGAC
JMSF035L20+           GATTAGGGTTTAAGATTTGAGTAATAGAACTTGTAGCGCAGCAGAGACGGCGATGTCGAC
                      ____________________________________________________________
consensus             GATTAGGGTTTAAGATTTGAGTAATAGAACTTGTAGCGCAGCAGAGACGGCGATGTCGAC
 
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JMSF040B07+           GAGCGATTTTGACGGCAAACACCCAGGCGTTGGGAATGATTGTCGCGACGTTGGAGTCTT
JMSF035L20+           GAGCGATTTTGACGGCAAACACCCAGGCGTTGGGAATGATTGTCGCGACGTTGGAGTCTT
                      ____________________________________________________________
consensus             GAGCGATTTTGACGGCAAACACCCAGGCGTTGGGAATGATTGTCGCGACGTTGGAGTCTT
 
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JMSF040B07+           GGGCATTTTTCTTGTAGTAAGCGGTAGGCGACGGATTTAGGTTTTGGAGATGGAGGA   
JMSF035L20+           GGGCATTTTTCTTGTAGTAAGCGGTAGGCGACGGATTTAGGTTTTGGAGATGGAGGAGCC
                      ____________________________________________________________
consensus             GGGCATTTTTCTTGTAGTAAGCGGTAGGCGACGGATTTAGGTTTTGGAGATGGAGGAGCC