Contig 000864:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050D16Sequence645000864 (4)ref|XP_010258034.1|1e-79PREDICTED: putative G3BP-like protein [Nelumbo nucifera]596002734 (2)
JMSF012C21Sequence254000864 (4)gb|EYU44203.1|3e-15hypothetical protein MIMGU_mgv1a010963mg [Erythranthe guttata]592008506 (7)ref|XP_006397961.1|3e-58hypothetical protein EUTSA_v10001688mg [Eutrema salsugineum] ref|XP_009116946.1|
JMSF035K24Sequence672000864 (4)ref|XP_010258034.1|1e-80PREDICTED: putative G3BP-like protein [Nelumbo nucifera]605002734 (2)
JMSF044A09Sequence725000864 (4)ref|XP_010258034.1|3e-87PREDICTED: putative G3BP-like protein [Nelumbo nucifera]618023618gb|EMT28647.1|5e-2460S ribosomal protein L9 [Aegilops tauschii]

Alignment

This contig is upended


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JMSF044A09+                                                TTGTCAACAGCACTTGTTTCATT
                      ____________________________________________________________
consensus                                                  TTGTCAACAGCACTTGTTTCATT
 
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JMSF044A09+           TTGACTTTGATGAGCCTGAGGCTCATTAACAACCTCCTCTTCGATAACTGATCCTTCTTC
                      ____________________________________________________________
consensus             TTGACTTTGATGAGCCTGAGGCTCATTAACAACCTCCTCTTCGATAACTGATCCTTCTTC
 
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JMSF044A09+           CTCATTGTCAGAAGGATCACAAACTTCTGCACCATTCTGTTCCTCAGATGGAGCAGTAGT
                      ____________________________________________________________
consensus             CTCATTGTCAGAAGGATCACAAACTTCTGCACCATTCTGTTCCTCAGATGGAGCAGTAGT
 
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JMSF044A09+           TGCAGGATCAAATGTAGAATGATCAGGAACATGGATGGGCTCTGGATCAGATGGCAAAAC
                      ____________________________________________________________
consensus             TGCAGGATCAAATGTAGAATGATCAGGAACATGGATGGGCTCTGGATCAGATGGCAAAAC
 
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JMSF044A09+           TGCTGGAGGAGCATCATTTATACCATTTACTGATGTAGAGTTATTCTCCAGTGATTCATT
JMFF050D16+                                                                 TTCATT
JMSF035K24+                                                                 TTCATT
                      ____________________________________________________________
consensus             TGCTGGAGGAGCATCATTTATACCATTTACTGATGTAGAGTTATTCTCCAGTGATTCATT
 
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JMSF044A09+           CTCCTCAACATATCGAAAAATGTCATTTAGGACAAAGTAACCCTTCTCTTGTGGAGCTAA
JMFF050D16+           CTCTTCAATATATCTAAAAATATCATTCAAGACAAAGTATCCCTTCTCTTGTGGAGCTAG
JMSF035K24+           CTCTTCAATATATCTAAAAATATCATTCAAGACAAAGTATCCCTTCTCTTGTGGAGCTAG
                      ____________________________________________________________
consensus             CTCTTCAATATATCTAAAAATATCATTCAAGACAAAGTATCCCTTCTCTTGTGGAGCTAG
 
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JMSF044A09+           AAAGAATGTTTGTGTAAATTTCTTGCTCACGTTGTCCTTTCCAGTTAAGCATCCTGTTAC
JMFF050D16+           AAAAAATGTTTGAGTAAACTTCTTTCTCACATTATCCCTTCCGGTCAAACACCCCGTCAC
JMSF035K24+           AAAAAATGTTTGAGTAAACTTCTTTCTCACATTATCCCTTCCGGTCAAACACCCCGTCAC
                      ____________________________________________________________
consensus             AAAAAATGTTTGAGTAAACTTCTTTCTCACATTATCCCTTCCGGTCAAACACCCCGTCAC
 
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JMSF044A09+           TAAAAGAATAACCCCTGCCTGGTGAGAGTCCTGAGCATCCGCAGTTTTTATCTCTGCCTT
JMFF050D16+           TAAAAGAATCACCCCAGCCTGGTGAGAATCCTGAGCATCTGCAGTTTTAATCTCTGCTTT
JMSF035K24+           TAAAAGAATCACCCCAGCCTGGTGAGAATCCTGAGCATCTGCAGTTTTAATCTCTGCTTT
                      ____________________________________________________________
consensus             TAAAAGAATCACCCCAGCCTGGTGAGAATCCTGAGCATCTGCAGTTTTAATCTCTGCTTT
 
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JMSF044A09+           GTAGTTCTTCGAATCCAAGGACAAAATTTTTTCATTGATTGCTTGCATAGTTGTCACAGA
JMFF050D16+           GTAGTTCTTCGAATCCAGGGACAATATCTTTTCATTGATTGCTTCCATTGTTGTCACAGA
JMSF035K24+           GTAGTTCTTCGAATCCAGGGACAATATCTTTTCATTGATTGCTTCCATTGTTGTCACAGA
                      ____________________________________________________________
consensus             GTAGTTCTTCGAATCCAGGGACAATATCTTTTCATTGATTGCTTCCATTGTTGTCACAGA
 
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JMSF044A09+           TGATATCATGCCATTTGGTTCTTGCCTGCTTAGGATACTTGAATCATGATAAAATTTGTA
JMFF050D16+           TGATATCACTCCATTTGGGTCTTGTCGGCTTAGGATGCTTGAATCTTGATAAAATTTGTA
JMSF012C21+                                      GCTTAGGATGCCTGAATCTTGATAAAATTNGTA
JMSF035K24+           TGATATCACTCCATTTGGGTCTTGTCGGCTTAGGATGCTTGAATCTTGATAAAATTTGTA
                      ____________________________________________________________
consensus             TGATATCACTCCATTTGGGTCTTGTCGGCTTAGGATGCTTGAATCTTGATAAAATTTGTA
 
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JMSF044A09+           AACTAGCTCGGGAGAATGATGTAGGATGTGATAGTACTGTTCTACAAAGGCATTACCAAC
JMFF050D16+           AACTAGTTCTGGAGAATGGTGTAGAATATGATAGTACTGTTCCACAAAGGCATTACCAAC
JMSF012C21+           AACTAGTTCTGGAGAATGGTGTAGAATATGATAGTACTGTTCCACAAAGGCATTACCAAC
JMSF035K24+           AACTAGTTCTGGAGAATGGTGTAGAATATGATAGTACTGTTCCACAAAGGCATTACCAAC
                      ____________________________________________________________
consensus             AACTAGTTCTGGAGAATGGTGTAGAATATGATAGTACTGTTCCACAAAGGCATTACCAAC
 
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JMSF044A09+           TATTTGGGCACTTGGAACAG                                        
JMFF050D16+           TATTTGCGCACTTGGAACAGGAACAGTGGTAGCAGGACTTTCTGCCTCTGTTGCCATCCG
JMSF012C21+           TATTTGCGCACTTGGAACAGGAACAGTGGTAGCAGGACTTTCTGCCTCTGTTGCCATCCG
JMSF035K24+           TATTTGCGCACTTGGAACAGGAACAGTGGTAGCAGGACTTTCTGCCTCTGTTGCCATCCG
                      ____________________________________________________________
consensus             TATTTGCGCACTTGGAACAGGAACAGTGGTAGCAGGACTTTCTGCCTCTGTTGCCATCCG
 
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JMFF050D16+           TCGCCGTGTGAATCAAGCGTTCGCGGAGGAGATAGAGATAGAAGACAGTACAAAGATACT
JMSF012C21+           TCGCCGTGTGAATCAAGCGTTCGCGGAGGAGATAGAGATAGAAGACAGTACAAAGATACT
JMSF035K24+           TCGCCGTGTGAATCAAGCGTTCGCGGAGGAGATAGAGATAGAAGACAGTACAAAGATACT
                      ____________________________________________________________
consensus             TCGCCGTGTGAATCAAGCGTTCGCGGAGGAGATAGAGATAGAAGACAGTACAAAGATACT
 
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JMFF050D16+           GGAGAATTGATGTTTTTGTTGTGCGCTGTGATAGAT                        
JMSF012C21+           GGAGAATTGATGTTTTTGTTGTGCGCTGTGATAGAT                        
JMSF035K24+           GGAGAATTGATGTTTTTGTTGTGCGCTGTGATAGATGAGATCACACTCCAAATCCAAAGC
                      ____________________________________________________________
consensus             GGAGAATTGATGTTTTTGTTGTGCGCTGTGATAGATGAGATCACACTCCAAATCCAAAGC