Contig 000857:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011G06Sequence404011933 (3)ref|XP_009770277.1|3e-18PREDICTED: uncharacterized protein LOC104221001 isoform X1 [Nicotiana sylvestri710000857 (3)ref|XP_009589098.1|1e-72PREDICTED: uncharacterized protein LOC104086523 isoform X3 [Nicotiana tomentosi
JMSF034O02Sequence545000857 (3)ref|XP_009589098.1|2e-30PREDICTED: uncharacterized protein LOC104086523 isoform X3 [Nicotiana tomentosi506000857 (3)ref|XP_009589098.1|2e-30PREDICTED: uncharacterized protein LOC104086523 isoform X3 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF011G06+                                            TATCATGGGATTATTCTTGTGAAGAT
                      ____________________________________________________________
consensus                                               TATCATGGGATTATTCTTGTGAAGAT
 
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rJMSF011G06+          ATTGCCTCCTCTTTTCACTAATACCATCCTCAATGCAAAGGACCAAAGAAGAAGAAAAAG
                      ____________________________________________________________
consensus             ATTGCCTCCTCTTTTCACTAATACCATCCTCAATGCAAAGGACCAAAGAAGAAGAAAAAG
 
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rJMSF011G06+          AGTGGTTCTTCATTGTTCAGACAATATTATCAGAGGCTGGCCTTGATGAGGTACAATGTG
                      ____________________________________________________________
consensus             AGTGGTTCTTCATTGTTCAGACAATATTATCAGAGGCTGGCCTTGATGAGGTACAATGTG
 
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rJMSF011G06+          ATTCATTTTTGTCAAGATGGCATTCACCAGAGAGCCCACTGGATCCATCATTGAGAGACA
                      ____________________________________________________________
consensus             ATTCATTTTTGTCAAGATGGCATTCACCAGAGAGCCCACTGGATCCATCATTGAGAGACA
 
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rJMSF011G06+          AGTACATTGATTCACATGAGGAGGAGACACTACATGAGGCTAAGCGAAGGAAAAGGAGAT
rJMSF034O02+                                                                GGAGAT
JMSF034O02-                                                                 GGAGAT
                      ____________________________________________________________
consensus             AGTACATTGATTCACATGAGGAGGAGACACTACATGAGGCTAAGCGAAGGAAAAGGAGAT
 
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rJMSF011G06+          CAACCAGAAAGCTAATCTACGATTGTGTCAATGCAGTGTTGATGGACATTGCGGGACACA
rJMSF034O02+          CAACCAGAAAGCTAATCTACGATTGTGTCAATGCAGTGTTGATGGACATTGCGGGACACA
JMSF034O02-           CAACCAGAAAGCTAATCTACGATTGTGTCAATGCAGTGTTGATGGACATTGCGGGACACA
                      ____________________________________________________________
consensus             CAACCAGAAAGCTAATCTACGATTGTGTCAATGCAGTGTTGATGGACATTGCGGGACACA
 
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rJMSF011G06+          GGCATGACACTTGCCAAAAAATTGTTCCTAGTGTGGTACACAGTACCCTCCTAGAGGAGG
rJMSF034O02+          GGCATGACACTTGCC-AAAAATTGTTCCTAGTGTGGTACACAGTACCCTCCTAGAGGAGG
JMSF034O02-           GGCATGACACTTGCC-AAAAATTGTTCCTAGTGTGGTACACAGTACCCTCCTAGAGGAGG
                      ____________________________________________________________
consensus             GGCATGACACTTGCC-AAAAATTGTTCCTAGTGTGGTACACAGTACCCTCCTAGAGGAGG
 
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rJMSF011G06+          GCGAGTCATTAATATTAGTGGACCATGTGTGGGAGCAAATGAGGGAATGGTTTTCGTGCA
rJMSF034O02+          GCGAGTCATTAATATTAGTGGACCATGTGTGGGAGCAAATGAGGGAATGGTTTTCGTGCA
JMSF034O02-           GCGAGTCATTAATATTAGTGGACCATGTGTGGGAGCAAATGAGGGAATGGTTTTCGTGCA
                      ____________________________________________________________
consensus             GCGAGTCATTAATATTAGTGGACCATGTGTGGGAGCAAATGAGGGAATGGTTTTCGTGCA
 
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rJMSF011G06+          ACATGACATGTCTCTCTGGTTATAGTGGGGACGGAAACAGCCTTGTGGTGGAAAGGATGG
rJMSF034O02+          ACATGACATGTCTCTCTGGTTATAGTGGGGACGGAAACAGCCTTGTGGTGGAAAGGATGG
JMSF034O02-           ACATGACATGTCTCTCTGGTTATAGTGGGGACGGAAACAGCCTTGTGGTGGAAAGGATGG
                      ____________________________________________________________
consensus             ACATGACATGTCTCTCTGGTTATAGTGGGGACGGAAACAGCCTTGTGGTGGAAAGGATGG
 
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rJMSF011G06+          TAGAGAAGGAACTGGTAGGGAAGGGGTGGATAGAATATTGGAAATTAGAATGGGAAAGTA
rJMSF034O02+          TAGAGAAGGAACTGGTAGGGAAGGGGTGGATAGAATATTGGAAATTAGAATGGGAAAGTA
JMSF034O02-           TAGAGAAGGAACTGGTAGGGAAGGGGTGGATAGAATATTGGAAATTAGAATGGGAAAGTA
                      ____________________________________________________________
consensus             TAGAGAAGGAACTGGTAGGGAAGGGGTGGATAGAATATTGGAAATTAGAATGGGAAAGTA
 
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rJMSF011G06+          TTGGAAAAGATATTGAAGGGAAACTTTTGGAAGAGATTGTGCATGAAGCAGTGGTTGAAA
rJMSF034O02+          TTGGAAAAGATATTGAAGGGAAACTTTTGGAAGAGATTGTGCATGAAGCAGTGGTTGAAA
JMSF034O02-           TTGGAAAAGATATTGAAGGGAAACTTTTGGAAGAGATTGTGCATGAAGCAGTGGTTGAAA
                      ____________________________________________________________
consensus             TTGGAAAAGATATTGAAGGGAAACTTTTGGAAGAGATTGTGCATGAAGCAGTGGTTGAAA
 
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rJMSF011G06+          TGACAAGGAGAATGTGATGCAGATTTTCTTCTTTAATATATGTATTAGTATTTCCTTCCT
rJMSF034O02+          TGACAAGGAGAATGTGATGCAGATTTTCTTCTTTAATATATGTATTAGTATTTCCTTCCT
JMSF034O02-           TGACAAGGAGAATGTGATGCANATTTTCTTCTTTAATATATGTATTANTATTTCCTTCCT
                      ____________________________________________________________
consensus             TGACAAGGAGAATGTGATGCAGATTTTCTTCTTTAATATATGTATTAGTATTTCCTTCCT
 
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rJMSF011G06+          TTTAAAATCACAAC                                              
rJMSF034O02+          TTTAAAATCACAACAGTATTATAATTGTATATCAAATATTTCATAATAATGATGCTTCTG
JMSF034O02-           TTTAAAATCACAACAGTATTATAATTGTATATCAAATATTTCATAATAATGATGCTTCTG
                      ____________________________________________________________
consensus             TTTAAAATCACAACAGTATTATAATTGTATATCAAATATTTCATAATAATGATGCTTCTG
 
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rJMSF034O02+          CTAACATGTAATTCTTA                                           
JMSF034O02-           CTAACATGTAATTCTTANGTTGTAACTGTATGCAATTCTTATAACAGTACCCTTTTTTTC
                      ____________________________________________________________
consensus             CTAACATGTAATTCTTANGTTGTAACTGTATGCAATTCTTATAACAGTACCCTTTTTTTC