Contig 000848:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013D05Sequence456000848 (3)584008579 (2)emb|CBI37149.3|1e-35unnamed protein product [Vitis vinifera]
JMSF019E22Sequence238000848 (3)ref|XP_009624075.1|89.7PREDICTED: uncharacterized protein LOC104115199 [Nicotiana tomentosiformis]
JMSF033P22Sequence671000848 (3)ref|XP_009624075.1|102PREDICTED: uncharacterized protein LOC104115199 [Nicotiana tomentosiformis]541008579 (2)emb|CBI37149.3|9e-31unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMSF033P22+                                                            TTTCATGATAT
                      ____________________________________________________________
consensus                                                              TTTCATGATAT
 
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JMSF019E22+             GAATTCTGCCCCCTTATAGACGCAAATGTCTGTTCCAATTTATCACGCACAAAGTCCT
JMSF033P22+           CTGAATTCTGCCCCCTTATAGACGCAAATGTCTGTTCCAATTTATCACGCACAAAGTCCT
                      ____________________________________________________________
consensus             CTGAATTCTGCCCCCTTATAGACGCAAATGTCTGTTCCAATTTATCACGCACAAAGTCCT
 
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JMSF019E22+           CAACTGCAGCTGCTTCACTCCTACGACCACGCCTCGGCTTTTTAGGGATTGTAGTGGGGA
JMSF033P22+           CAACTGCAGCTGCTTCACTCCTACGACCACGCCTCGGCTTTTTAGGGATTGTAGTGGGGA
                      ____________________________________________________________
consensus             CAACTGCAGCTGCTTCACTCCTACGACCACGCCTCGGCTTTTTAGGGATTGTAGTGGGGA
 
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JMSF019E22+           AGATTTCACTAGATTCTTTACCCACATCTTCTGAACCTTTGGTTATCTTCAGTTTTGTAG
JMSF033P22+           AGATTTCACTAGATTCTTTACCCACATCTTCTGAACCTTTGGTTATCTTCAGTTTTGTAG
                      ____________________________________________________________
consensus             AGATTTCACTAGATTCTTTACCCACATCTTCTGAACCTTTGGTTATCTTCAGTTTTGTAG
 
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JMSF013D05+                                   TCTGATGAACATTTGTATCAGATTGCTCAGATTCCC
JMSF019E22+           TTTTTTTAGGCCTTGAATTATCTTTCTGATGAACATTTGTATCAGATTGCTCAGATT   
JMSF033P22+           TTTTTTTAGGCCTTGAATTATCTTTCTGATGAACATTTGTATCAGATTGCTCAGATTCCC
                      ____________________________________________________________
consensus             TTTTTTTAGGCCTTGAATTATCTTTCTGATGAACATTTGTATCAGATTGCTCAGATTCCC
 
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JMSF013D05+           TCGAGATAGCGAAACATCTAACATGGTTCAGAGTTTGGCATTGTTTCAAAGACGATGAGA
JMSF033P22+           TCGAGATAGCGAAACATCTAACATGGTTCAGAGTTTGGCATTGTTTCAAAGACGATGAGA
                      ____________________________________________________________
consensus             TCGAGATAGCGAAACATCTAACATGGTTCAGAGTTTGGCATTGTTTCAAAGACGATGAGA
 
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JMSF013D05+           ATAACAAGTTCAAAACAGAGACATGGCTAGAATTACAATGATGTCTCTGTTTAACACAGA
JMSF033P22+           ATAACAAGTTCAAAACAGAGACATGGCTAGAATTACAATGATGTCTCTGTTTAACACAGA
                      ____________________________________________________________
consensus             ATAACAAGTTCAAAACAGAGACATGGCTAGAATTACAATGATGTCTCTGTTTAACACAGA
 
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JMSF013D05+           GTGATGAAAGAGAATCAAGGTTGAACTTAGGGCTTGATGCAAAAAGAAACATTTTTTCCC
JMSF033P22+           GTGATGAAAGAGAATCAAGGTTGAACTTAGGGCTTGATGCAAAAAGAAACATTTTTTCCC
                      ____________________________________________________________
consensus             GTGATGAAAGAGAATCAAGGTTGAACTTAGGGCTTGATGCAAAAAGAAACATTTTTTCCC
 
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JMSF013D05+           CTCCTGAAAACTCCAAATAACATTCACAGTGATGTCTGGAACTCGTTTAGAATCTTGAAA
JMSF033P22+           CTCCTGAAAACTCCAAATAACATTCACAGTGATGTCTGGAACTCGTTTAGAATCTTGAAA
                      ____________________________________________________________
consensus             CTCCTGAAAACTCCAAATAACATTCACAGTGATGTCTGGAACTCGTTTAGAATCTTGAAA
 
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JMSF013D05+           GATCTCAAAGTAAAAACCTGAGGAGTTGCTGCTTCACGACTGACGACGGTCAACGGAGTT
JMSF033P22+           GATCTCAAAGTAAAAACCTGAGGAGTTGCTGCTTCACGACTGACGACGGTCAACGGAGTT
                      ____________________________________________________________
consensus             GATCTCAAAGTAAAAACCTGAGGAGTTGCTGCTTCACGACTGACGACGGTCAACGGAGTT
 
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JMSF013D05+           TCTGACCGATAGCTTAAGTCGGAGGCGCGGAGCTGCGGGCTATGGCGCACAGGAGTAAGG
JMSF033P22+           TCTGACCGATAGCTTAAGTCGGAGGCGCGGAGCTGCGGGCTATGGCGCACAGGAGTAAGG
                      ____________________________________________________________
consensus             TCTGACCGATAGCTTAAGTCGGAGGCGCGGAGCTGCGGGCTATGGCGCACAGGAGTAAGG
 
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JMSF013D05+           CAGGCTGCTACTGCTAGTGAAGTGTGAAGACTGAAGCCAGTGGCGGTGAAGAACAGAAGC
JMSF033P22+           CAGGCTGCTACTGCTAGTGAAGTGTGAAGACTGAAGCCAGTGGCGGTGAAGAACAGAAGC
                      ____________________________________________________________
consensus             CAGGCTGCTACTGCTAGTGAAGTGTGAAGACTGAAGCCAGTGGCGGTGAAGAACAGAAGC