| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS129B08 | Sequence | 615 | 000845 (4) | emb|CDP02401.1| | 5e-39 | unnamed protein product [Coffea canephora] | |||||
| JMSF009N09 | Sequence | 161 | 000845 (4) | 737 | 005738 (4) | emb|CDP02401.1| | 2e-94 | unnamed protein product [Coffea canephora] | |||
| JMSF033N01 | Sequence | 609 | 000845 (4) | emb|CDP02401.1| | 3e-35 | unnamed protein product [Coffea canephora] | 713 | 005738 (4) | ref|XP_009621362.1| | 7e-59 | PREDICTED: translation initiation factor eIF-2B subunit delta-like isoform X2 [ |
| JMSF037M06 | Sequence | 639 | 000845 (4) | emb|CDP02401.1| | 8e-51 | unnamed protein product [Coffea canephora] | 726 | 005738 (4) | emb|CDP02401.1| | 1e-91 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF037M06+ CGTTCACAATGGAAACTGTGGTTAAACCAGCAGAGCGAAAGCTGTTGTTCTGCTTAGC
____________________________________________________________
consensus CGTTCACAATGGAAACTGTGGTTAAACCAGCAGAGCGAAAGCTGTTGTTCTGCTTAGC
. : . : . : . : . : . :
JMSF037M06+ GCCCGTCATGTCGAATCCACCAGTAGGAAGCGAGGTCGCGAACTTTCCAGAATCTCCCTT
JMFS129B08+ CAGTAGGAAGCGAGGTCGCGAACTTTCCAGAATCTCCCTT
JMSF033N01+ ATCTCCCTT
____________________________________________________________
consensus GCCCGTCATGTCGAATCCACCAGTAGGAAGCGAGGTCGCGAACTTTCCAGAATCTCCCTT
. : . : . : . : . : . :
JMSF037M06+ GCCAGCTCGGCTCAGCGAAAGAGCATCCTCGGTGAAGTCAGACGCAGTAGGGGAAGTGAA
JMFS129B08+ GCCAGCTCGGCTCAGCGAAAGAGCATCCTCGGTGAAGTCAGACGCAGTAGGGGAAGTGAA
JMSF033N01+ GCCAGCTCGGCTCAGCGAAAGAGCATCCTCGGTGAAGTCAGACGCAGTAGGGGAAGTGAA
____________________________________________________________
consensus GCCAGCTCGGCTCAGCGAAAGAGCATCCTCGGTGAAGTCAGACGCAGTAGGGGAAGTGAA
. : . : . : . : . : . :
JMSF037M06+ TTCCGAGGGATTGTAGCTGCCGACCGGGATGGAGTCGCGGTGGAGCGGGGACGGGGAGAG
JMFS129B08+ TTCCGAGGGATTGTAGCTGCCGACCGGGATGGAGTCGCGGTGGAGCGGGGACGGGGAGAG
JMSF033N01+ TTCCGAGGGATTGTAGCTGCCGACCGGGATGGAGTCGCGGTGGAGCGGGGACGGGGAGAG
____________________________________________________________
consensus TTCCGAGGGATTGTAGCTGCCGACCGGGATGGAGTCGCGGTGGAGCGGGGACGGGGAGAG
. : . : . : . : . : . :
JMSF037M06+ CGGAACCGGAGGGAAGTGAGCCGCCGCGCGAGAGAGGTCAGACGACAAGTGGCGCGGCGG
JMFS129B08+ CGGAACCGGAGGGAAGTGAGCCGCCGCGCGAGAGAGGTCAGACGACAAGTGGCGCGGCGG
JMSF033N01+ CGGAACCGGAGGGAAGTGAGCCGCCGCGCGAGAGAGGTCAGACGACAAGTGGCGCGGCGG
____________________________________________________________
consensus CGGAACCGGAGGGAAGTGAGCCGCCGCGCGAGAGAGGTCAGACGACAAGTGGCGCGGCGG
. : . : . : . : . : . :
JMSF037M06+ CGGAATCATCACGGGAGACAGCGAGTTACCGGACGGGGATATATCGGATACGGGCGGAGA
JMFS129B08+ CGGAATCATCACGGGAGACAGCGAGTTACCGGACGGGGATATATCGGATACGGGCGGAGA
JMSF033N01+ CGGAATCATCACGGGAGACAGCGAGTTACCGGACGGGGATATATCGGATACGGGCGGAGA
____________________________________________________________
consensus CGGAATCATCACGGGAGACAGCGAGTTACCGGACGGGGATATATCGGATACGGGCGGAGA
. : . : . : . : . : . :
JMSF037M06+ GGATGACGTTGGATCGGGCGGACCCGATTGGGAACGGTCCGGCGGGGCTCCGGGAGCGAA
JMFS129B08+ GGATGACGTTGGATCGGGCGGACCCGATTGGGAACGGTCCGGCGGGGCTCCGGGAGCGAA
JMSF033N01+ GGATGACGTTGGATCGGGCGGACCCGATTGGGAACGGTCCGGCGGGGCTCCGGGAGCGAA
____________________________________________________________
consensus GGATGACGTTGGATCGGGCGGACCCGATTGGGAACGGTCCGGCGGGGCTCCGGGAGCGAA
. : . : . : . : . : . :
JMSF037M06+ GAACCCAACTTGACGGACCTTCGGGTCGCTCACGGCCCGCGAAACTCGGCGAGAGTCCAT
JMFS129B08+ GAACCCAACTTGACGGACCTTCGGGTCGCTCACGGCCCGCGAAACTCGGCGAGAGTCCAT
JMSF033N01+ GAACCCAACTTGACGGACCTTCGGGTCGCTCACGGCCCGCGAAACTCGGCGAGAGTCCAT
____________________________________________________________
consensus GAACCCAACTTGACGGACCTTCGGGTCGCTCACGGCCCGCGAAACTCGGCGAGAGTCCAT
. : . : . : . : . : . :
JMSF037M06+ TGGATGGATGTCGCGTTGGAATGCGGCGATGATGCAATCGCGGGCGCTATAAGGCCATAC
JMFS129B08+ TGGATGGATGTCGCGTTGGAATGCGGCGATGATGCAATCGCGGGCGCTATAAGGCCATAC
JMSF033N01+ TGGATGGATGTCGCGTTGGAATGCGGCGATGATGCAATCGCGGGCGCTATAAGGCCATAC
____________________________________________________________
consensus TGGATGGATGTCGCGTTGGAATGCGGCGATGATGCAATCGCGGGCGCTATAAGGCCATAC
. : . : . : . : . : . :
JMSF037M06+ GAAGGAAGGGGAGACGGGAGATAGAGAGAAGAAGTGGGGAATAGAGGAGAGAGATATCGG
JMFS129B08+ GAAGGAAGGGGAGACGGGAGATAGAGAGAAGAAGTGGGGAATAGAGGAGAGAGATATCGG
JMSF009N09+ GAAGGAAGGGGAGACNGGAGATAGAGAGAAGAAGTGGGGAATAGAGGAGAGAGATATCGG
JMSF033N01+ GAAGGAAGGGGAGACGGGAGATAGAGAGAAGAAGTGGGGAATAGAGGAGAGAGATATCGG
____________________________________________________________
consensus GAAGGAAGGGGAGACGGGAGATAGAGAGAAGAAGTGGGGAATAGAGGAGAGAGATATCGG
. : . : . : . : . : . :
JMSF037M06+ CGGAGAGAACTAGGGTTTAGGTGGGCCGAAGAATCAAATC
JMFS129B08+ AGGAGAGAACTAGGGTTTAGGTGGGCCGAAGAATCAAATCGCGGTGGCGTTGGTGGTTTC
JMSF009N09+ CGGAGAGAACTAGGGTTTAGGTGGGCCGAAGAATCAAATCGCGGTGGCGTTGGTGGTTTC
JMSF033N01+ CGGAGAGAACTAGGGTTTAGGTGGGCCGAAGAATCAAATCGCGGTGGCGTTGGTGGTTTC
____________________________________________________________
consensus CGGAGAGAACTAGGGTTTAGGTGGGCCGAAGAATCAAATCGCGGTGGCGTTGGTGGTTTC
. : . : . : . : . : . :
JMFS129B08+ AGGTGGAGGAGGGTTTTCGAGCAGTGATGGAGTTG
JMSF009N09+ AGGTGGAGGAGGGTTTTCGAGCAGTGATGGAGTTG
JMSF033N01+ AGGTGGAGGAGGGTTTTCGAGCAGTGATGGAGTTGGACTTGGGACCGCAGCCAAAATGTC
____________________________________________________________
consensus AGGTGGAGGAGGGTTTTCGAGCAGTGATGGAGTTGGACTTGGGACCGCAGCCAAAATGTC