Contig 000844:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS101B06Sequence621000844 (2)ref|XP_008807362.1|7e-43PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Phoenix dactylifera]
JMSF033J03Sequence683000844 (2)ref|XP_009588392.1|6e-37PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Nicotiana tomentosiformis627021516gb|KCW87674.1|1e-43hypothetical protein EUGRSUZ_A000571, partial [Eucalyptus grandis] gb|KCW87675.1

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033J03+                                              TCAAGAGGACAGTTATCAAAGCATA
                      ____________________________________________________________
consensus                                                TCAAGAGGACAGTTATCAAAGCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+                             TAGCATTGGTAAGTCGGATAGTCTTTTCTAACAAGCCAACAA
JMSF033J03+           TACCACAAACCACTTCCTTAGCATTGGTAAGTCGGATAGTCTTTTCTAACAAGCCAACAA
                      ____________________________________________________________
consensus             TACCACAAACCACTTCCTTAGCATTGGTAAGTCGGATAGTCTTTTCTAACAAGCCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           GTTTCCGGACTCTTTCTTCGTCAGAAAACCATTCCTCATGGACCTTATTTACACTCCAAT
JMSF033J03+           GTTTCCGGACTCTTTCTTCGTCAGAAAACCATTCCTCATGGACNTTATTTA--CTCCAAT
                      ____________________________________________________________
consensus             GTTTCCGGACTCTTTCTTCGTCAGAAAACCATTCCTCATGGACCTTATTTACACTCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           TATAACGGCGCAAAAGTAAGCATGCTTCTTCTCTTGAGATGGAAAGAACGGTGGAAATTC
JMSF033J03+           TATAACGGCGCAAAAGTAAGCATGCTTCTTCTCTTGAGATGGAAAGAACGGTGGAAATTC
                      ____________________________________________________________
consensus             TATAACGGCGCAAAAGTAAGCATGCTTCTTCTCTTGAGATGGAAAGAACGGTGGAAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           TTGTTATATCATCCTCTTGGCGTTGACGAATGTCTTCTTCCTTCAAAACGGTATAATTTC
JMSF033J03+           TTGTTATATCATCCTCTTGGCGTTGACGAATGTCTTCTTCCTTCAAAACGGTATAATTTC
                      ____________________________________________________________
consensus             TTGTTATATCATCCTCTTGGCGTTGACGAATGTCTTCTTCCTTCAAAACGGTATAATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           TCTGAGAACGCCTAAGGGCGAGTTCTTCGGAGTCATCGGACTCGTTGCCCAAGTCATAGT
JMSF033J03+           TCTGAGAACGCCTAAGGGCGAGTTCTTCGGAGTCATCGGACTCGTTGCCCAAGTCATAGT
                      ____________________________________________________________
consensus             TCTGAGAACGCCTAAGGGCGAGTTCTTCGGAGTCATCGGACTCGTTGCCCAAGTCATAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           CGGCTAACCCGGCATCACTGTCCATGGCGGATTCCCCATAGCCATAGCCGTCGCCGTCAC
JMSF033J03+           CGGCTAACCCGGCATCACTGTCCATGGCGGATTCCCCATAGCCATAGCCGTCGCCGTCAC
                      ____________________________________________________________
consensus             CGGCTAACCCGGCATCACTGTCCATGGCGGATTCCCCATAGCCATAGCCGTCGCCGTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           TGTAGAAGTCCTCGTCGACCGACTCTATGTCGTTGGCGTCATGCATATCATCATCTGACT
JMSF033J03+           TGTAGAAGTCCTCGTCGACCGACTCTATGTCGTTGGCGTCATGCATATCATCATCTGACT
                      ____________________________________________________________
consensus             TGTAGAAGTCCTCGTCGACCGACTCTATGTCGTTGGCGTCATGCATATCATCATCTGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           CCATTGAATGCAGAAATCGAAACTCAAAACCCTAGCTCAGCTCAATCGAGCTCAAGGGTC
JMSF033J03+           CCATTGAATGCAGAAATCGAAACTCAAAACCCTAGCTCAGCTCAATCGAGCTCAAGGGTC
                      ____________________________________________________________
consensus             CCATTGAATGCAGAAATCGAAACTCAAAACCCTAGCTCAGCTCAATCGAGCTCAAGGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           AGTTATAGCTTAACAAATTGGGGCAATGATTCAAGCGATCGATCGCTTCAATCAAAAAAT
JMSF033J03+           AGTTATAGCTTAACAAATTGGGGCAATGATTCAAGCGATCGATCGCTTCAATCAAAAAAT
                      ____________________________________________________________
consensus             AGTTATAGCTTAACAAATTGGGGCAATGATTCAAGCGATCGATCGCTTCAATCAAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           GAATAAAAATTCTACAAAACAAGCAACTGCAGATAGATACACATTATGTACATGAATAAT
JMSF033J03+           GAATAAAAATTCTACAAAACAAGCAACTGCAGATAGATACACATTANGTACATGAATAAT
                      ____________________________________________________________
consensus             GAATAAAAATTCTACAAAACAAGCAACTGCAGATAGATACACATTATGTACATGAATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101B06+           CCAGCGTTGGGGTAAAGGAAAATGGTAGATGTAGCGTCT                     
JMSF033J03+           CCAGCGTTGGGGTAAAGGAAAATGGTAGATGTAGCGTCTTCAGAATAGTGGTGTCGTCTC
                      ____________________________________________________________
consensus             CCAGCGTTGGGGTAAAGGAAAATGGTAGATGTAGCGTCTTCAGAATAGTGGTGTCGTCTC