Contig 000842:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009B24Sequence110000842 (2)269004175 (6)ref|XP_011095434.1|2e-09PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMSF033G24Sequence675000842 (2)ref|NP_001233826.1|2e-60TCP transcription factor 21 [Solanum lycopersicum] gb|ADM87270.1| TCP transcript

Alignment

This contig is upended


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JMSF033G24+                                                        GTTCACAGACACCGC
                      ____________________________________________________________
consensus                                                          GTTCACAGACACCGC
 
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JMSF033G24+           GATGGCCGGAACCGTGCCGGTGCCCGTGGCCTCGATAATAGCCGGCTCAGCCCGCTCGAG
                      ____________________________________________________________
consensus             GATGGCCGGAACCGTGCCGGTGCCCGTGGCCTCGATAATAGCCGGCTCAGCCCGCTCGAG
 
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JMSF033G24+           GAGCCAACGAATGGTCTCTCCGTCCGACTTGTGGCCCAGCTCGCGGGTCAATTGAAAAAT
                      ____________________________________________________________
consensus             GAGCCAACGAATGGTCTCTCCGTCCGACTTGTGGCCCAGCTCGCGGGTCAATTGAAAAAT
 
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JMSF033G24+           TCTGGCAGCACAAGCCGCCGGCATACGAACTCTCNTCCCACGACCCTCCACCTTGGTATG
                      ____________________________________________________________
consensus             TCTGGCAGCACAAGCCGCCGGCATACGAACTCTCNTCCCACGACCCTCCACCTTGGTATG
 
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JMSF033G24+           GCGGTCCTTGGAGGACCTCTTAGGCAGAGATTTCTCCAATGTCCGCACCNGCATATGGCC
                      ____________________________________________________________
consensus             GCGGTCCTTGGAGGACCTCTTAGGCAGAGATTTCTCCAATGTCCGCACCNGCATATGGCC
 
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JMSF033G24+           CCCCAATGGCAACGCCACCTGCAAATCATTTTCCTCCGGCTCCTCCTTCAACAAGGGCAC
                      ____________________________________________________________
consensus             CCCCAATGGCAACGCCACCTGCAAATCATTTTCCTCCGGCTCCTCCTTCAACAAGGGCAC
 
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JMSF033G24+           ACTATCAGACGACCCAGCCGCCGCGATTTCTGACGCCGGACCACCAACAGCAGTAATCGT
                      ____________________________________________________________
consensus             ACTATCAGACGACCCAGCCGCCGCGATTTCTGACGCCGGACCACCAACAGCAGTAATCGT
 
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JMSF033G24+           ATATTCATTCGAGTCACCCAACAGTGGATCAGCCGGGCTGTTAACCTCCTCGTCGGCGGN
                      ____________________________________________________________
consensus             ATATTCATTCGAGTCACCCAACAGTGGATCAGCCGGGCTGTTAACCTCCTCGTCGGCGGN
 
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JMSF033G24+           GACGACATNGAAATTTTGTGGCCGGTTATCAATCGACGCCATATCGAAGAAAAACAATTT
                      ____________________________________________________________
consensus             GACGACATNGAAATTTTGTGGCCGGTTATCAATCGACGCCATATCGAAGAAAAACAATTT
 
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JMSF033G24+           CACGGCGANGGCGTCGTTTCACGGGGAACAAAAAGGAGGTCGTCGTNTTNGTCGTCGTAC
                      ____________________________________________________________
consensus             CACGGCGANGGCGTCGTTTCACGGGGAACAAAAAGGAGGTCGTCGTNTTNGTCGTCGTAC
 
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JMSF009B24+                     AAGCTAGGCTNGNATCTGTGTTTCANTTCAGAGATTTTACGAAAAATAAA
JMSF033G24+           CAGTTGACTGAAGCTAGGCTTGAATCTGTGTTTCAATTCAGAGATTTTACGAAAAATAAA
                      ____________________________________________________________
consensus             CAGTTGACTGAAGCTAGGCTTGAATCTGTGTTTCAATTCAGAGATTTTACGAAAAATAAA
 
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JMSF009B24+           AAGCTTTGAAGAAATATATAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACTC
JMSF033G24+           AAGCTTTGAAGAAATATATAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACTC
                      ____________________________________________________________
consensus             AAGCTTTGAAGAAATATATAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACTC