Contig 000834:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007H01Sequence551000834 (3)ref|XP_006361985.1|2e-56PREDICTED: uncharacterized protein LOC102602112 isoform X2 [Solanum tuberosum]643004302 (2)ref|XP_009611870.1|1e-60PREDICTED: protein trichome birefringence-like 12 [Nicotiana tomentosiformis]
JMSF006A19Sequence289000834 (3)311009754 (3)
JMSF032C09Sequence674000834 (3)ref|XP_006361985.1|1e-80PREDICTED: uncharacterized protein LOC102602112 isoform X2 [Solanum tuberosum]820004302 (2)ref|XP_008813324.1|1e-56PREDICTED: protein trichome birefringence-like 12 isoform X2 [Phoenix dactylife

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032C09+                                                        CTGCACATATTCTGC
                      ____________________________________________________________
consensus                                                          CTGCACATATTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032C09+           AAGCAAGACGGCACGATGATAGCCAACAGTGACATTAAATTTGGGGAAAAATGCCCCTCT
                      ____________________________________________________________
consensus             AAGCAAGACGGCACGATGATAGCCAACAGTGACATTAAATTTGGGGAAAAATGCCCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+                                     TAGCACCCATATCCGCCACTCTAAGTATACACAG
JMSF032C09+           CCAAGCCCCTTTTCTCTTCCACTTCTTAGCACCCATATCCGCCACTCTAAGTATACACAG
                      ____________________________________________________________
consensus             CCAAGCCCCTTTTCTCTTCCACTTCTTAGCACCCATATCCGCCACTCTAAGTATACACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           AAAAGAAACCAAGAAATTCTCATTCAAAGAGTCCCCCACAAACCCAATATTCCTATTCCT
JMSF032C09+           AAAAGAAACCAAGAAATTCTCATTCAAAGAGTCCCCCACAAACCCAATATTCCTATTCCT
                      ____________________________________________________________
consensus             AAAAGAAACCAAGAAATTCTCATTCAAAGAGTCCCCCACAAACCCAATATTCCTATTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           CATCAGACCCAAGAACCCAGATGGGTCGACCCGAGCCAATTCGCAGTCTTCGGGCACCCA
JMSF032C09+           CATCAGACCCAAGAACCCAGATGGGTCGACCCGAGCCAATTCGCAGTCTTCGGGCACCCA
                      ____________________________________________________________
consensus             CATCAGACCCAAGAACCCAGATGGGTCGACCCGAGCCAATTCGCAGTCTTCGGGCACCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           CCTCCACGAATTGATCCGACCCATATTCTCCCTCTCGTTTCTGAGGCAGTTCCAAGCGTT
JMSF032C09+           CCTCCACGAATTGATCCGACCCATATTCTCCCTCTCGTTTCTGAGGCAGTTCCAAGCGTT
                      ____________________________________________________________
consensus             CCTCCACGAATTGATCCGACCCATATTCTCCCTCTCGTTTCTGAGGCAGTTCCAAGCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           TCTGTGGAACGGGCAGTTGTCGTCGTACATGGGCTTCCGAGCCGGGTCGAACACCCATTG
JMSF032C09+           TCTGTGGAACGGGCAGTTGTCGTCGTACATGGGCTTCCGAGCCGGGTCGAACACCCATTG
                      ____________________________________________________________
consensus             TCTGTGGAACGGGCAGTTGTCGTCGTACATGGGCTTCCGAGCCGGGTCGAACACCCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           ACCCTTGAAGAGATTGCACGAGGATGAAATCGAGAG-TTTAGGCTTTGAATACTGCGAGG
JMSF006A19+             CCTTGAAGAGATTGCACGAGGATGAAATCGAGAGTTTTAGGCTTTGAATACTGCGAGG
JMSF032C09+           ACCCTTGAAGAGATTGCACGAGGATGAAATCGAGAG-TTTAGGCTTTGAATACTGCGAGG
                      ____________________________________________________________
consensus             ACCCTTGAAGAGATTGCACGAGGATGAAATCGAGAG-TTTAGGCTTTGAATACTGCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           AGGATGGGGATGAGGGAGTGTAAAGAGGAAGGAATGTAGAGTAGAGGATGAGGAGCATAA
JMSF006A19+           AGGATGGGGATGAGGGAGTGTAAAGAGGAAGGAATGTAGAGTAGAGGATGAGGAGCATAA
JMSF032C09+           AGGATGGGGATGAGGGAGTGTAAAGAGGAAGGAATGTAGAGTAGAGGATGAGGAGCATAA
                      ____________________________________________________________
consensus             AGGATGGGGATGAGGGAGTGTAAAGAGGAAGGAATGTAGAGTAGAGGATGAGGAGCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           AAGCTGGAAGAAAAAGCCATGTGAAGAGCTTTGGGTTTAGCTTAGAGGCCATTCTCAATC
JMSF006A19+           AAGCTGGAAGAAAAAGCCATGTGAAGAGCTTTGGGTTTAGCTTAGAGGCCATTCTCAATC
JMSF032C09+           AAGCTGGAAGAAAAAGCCATGTGAAGAGCTTTGGGTTTAGCTTAGAGGCCATTCTCAATC
                      ____________________________________________________________
consensus             AAGCTGGAAGAAAAAGCCATGTGAAGAGCTTTGGGTTTAGCTTAGAGGCCATTCTCAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           ACATTAATGGAGTTGAACAAAATCTACGCGGATCAACAGATGAAGGTAAGAAGGGTGAGC
JMSF006A19+           ACATTAATGGAGTTGAACAAAATCTACGCGGATCAACAGATGAAGGTAAGAAGGGTGAGC
JMSF032C09+           ACATTAATGGAGTTGAACAAAATCTACGCGGATCAACAGATGAAGGTAAGAAGGGTGAGC
                      ____________________________________________________________
consensus             ACATTAATGGAGTTGAACAAAATCTACGCGGATCAACAGATGAAGGTAAGAAGGGTGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007H01+           TCTCGATTTGCAACACATTTCACTTTTAAATTCTTACC                      
JMSF006A19+           TCTCGATTTGCAACACATTTCACTTTTAAATTCTTACCAATTGTGCCA            
JMSF032C09+           TCTCGATTTGCAACACATTTCACTTTTAAATTCTTACCAATTGTGCCAAGCACAAAATCC
                      ____________________________________________________________
consensus             TCTCGATTTGCAACACATTTCACTTTTAAATTCTTACCAATTGTGCCAAGCACAAAATCC