Contig 000822:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS070B12+                                                                     AT
                      ____________________________________________________________
consensus                                                                       AT
 
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JMFS070B12+           AATATGTGACCCCAAAGGAGAAGGGATCAAAGATAACACTCATGCCAAGTAATCCAAACA
                      ____________________________________________________________
consensus             AATATGTGACCCCAAAGGAGAAGGGATCAAAGATAACACTCATGCCAAGTAATCCAAACA
 
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JMFS070B12+           AAGCACAGAATAGATGAGTAAGGAGTTACAACAACAAAGCAATACCTACCTCAACCCCTT
                      ____________________________________________________________
consensus             AAGCACAGAATAGATGAGTAAGGAGTTACAACAACAAAGCAATACCTACCTCAACCCCTT
 
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JMFS070B12+           CTCCTCTACATTGATGCTAGAGAGATCATATAGTCTCAATAAAGCTCCACTTTGCAAAGT
                      ____________________________________________________________
consensus             CTCCTCTACATTGATGCTAGAGAGATCATATAGTCTCAATAAAGCTCCACTTTGCAAAGT
 
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JMFS070B12+           TCAGAAGTCTATCTTTATAATCCTCTAACATTGGTGAACTGGACTCTTTGTTGAGCTCCT
rJMSF027F15-                            AATCCTCTAACATTGGTGAACTGGACTCTTTGTTGAGCTCCT
                      ____________________________________________________________
consensus             TCAGAAGTCTATCTTTATAATCCTCTAACATTGGTGAACTGGACTCTTTGTTGAGCTCCT
 
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JMFS070B12+           GTGACTGGGTCAAACAGGAGACTGTGACCTGCTTCTGTCACGTTCTCGGTTCCTATCCCT
rJMSF027F15-          GTGACTGGGTCAAACAGGAGACTGTGACCTGCTTCTGTCACGTTCTCGGTTCCTATCCCT
                      ____________________________________________________________
consensus             GTGACTGGGTCAAACAGGAGACTGTGACCTGCTTCTGTCACGTTCTCGGTTCCTATCCCT
 
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JMFS070B12+           TCCATTTCTGGAAGTACAGTAATTCCAATCTGAACCCCTGTCTCTGTCACGAGTCCCTCT
rJMSF027F15-          TCCATTTCTGGAATTACTGTACTTCCAATCTGAACCCCTGTCTCTGTCACGAGTCCCTCT
                      ____________________________________________________________
consensus             TCCATTTCTGGAATTACTGTACTTCCAATCTGAACCCCTGTCTCTGTCACGAGTCCCTCT
 
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JMFS070B12+           GCCATTCCTATCATAAGACCTTTCATGTTCACGATCTCTTTCTCGGTAGCGATCACGTTC
rJMSF027F15-          GCCATTCCTATCATAAGACCTTTCATGTTCACGATCTCTTTCTCGGTAGCGATCACGTTC
                      ____________________________________________________________
consensus             GCCATTCCTATCATAAGACCTTTCATGTTCACGATCTCTTTCTCGGTAGCGATCACGTTC
 
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JMFS070B12+           CCTTCCATAATCCCTATCACGGTACCTGTCCCTATCAGATGAACCACTTCTATGCCTGCT
rJMSF027F15-          CCTTCCATAATCCCTATCACGGTACCTGTCCCTATCAGATGAACCACTTCTATGCCTGCT
                      ____________________________________________________________
consensus             CCTTCCATAATCCCTATCACGGTACCTGTCCCTATCAGATGAACCACTTCTATGCCTGCT
 
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JMFS070B12+           TTCATATTCTTTCTCCCTTTGCTTCCTTTTTTCTTCCACTTCTTTCTCCCTTGCCAATCT
rJMSF027F15-          TTCATATTCTTTCTCCCTTTGCTTCCTTTTTTCTTCCACTTCTTTCTCCCTTGCCAATCT
                      ____________________________________________________________
consensus             TTCATATTCTTTCTCCCTTTGCTTCCTTTTTTCTTCCACTTCTTTCTCCCTTGCCAATCT
 
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JMFS070B12+           TTCCTCTTCCTTTGCCTTCTCTCTTGCAGCCTTGTATTCAGACAGGAAATCTCGAACCAT
rJMSF027F15-          TTCCTCTTCCTTTGCCTTCTCTCTTGCAGCCTTGTATTCAGACAGGAAATCTCGAACCAT
rJMSF031D02-                                           GTATTCAGACAGGAAATCTCGAACCAT
                      ____________________________________________________________
consensus             TTCCTCTTCCTTTGCCTTCTCTCTTGCAGCCTTGTATTCAGACAGGAAATCTCGAACCAT
 
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JMFS070B12+           GCCATAACCAACATGCTGCTTGCCT                                   
rJMSF027F15-          GCCATAACCAACATGCTGCTTGCCTGTGACATGAGACTGAGTCCTCTCAGCAGCATCATT
rJMSF031D02-          GCCATAACCAACATGCTGCTTGCCTGTGACATGAGACTGAGTCCTCTCAGCAGCATCATT
                      ____________________________________________________________
consensus             GCCATAACCAACATGCTGCTTGCCTGTGACATGAGACTGAGTCCTCTCAGCAGCATCATT
 
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rJMSF027F15-          TGCAATTAAAAAGGAGCCACATGTTTCACACAATGCCATCTTTTTCTCCTGTGCCATCAT
rJMSF031D02-          TGCAATTAAAAAGGAGCCACATGTTTCACACAATGCCATCTTTTTCTCCTGTGCCATCAT
                      ____________________________________________________________
consensus             TGCAATTAAAAAGGAGCCACATGTTTCACACAATGCCATCTTTTTCTCCTGTGCCATCAT
 
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rJMSF027F15-          TAACACATTGCTTTGCTGTGATTGCTGAGTCAAGGCTGTCTTTTCAACATTAAGCAATTC
rJMSF031D02-          TAACACATTGCTTTGCTGTGATTGCTGAGTCAAGGCTGTCTTTTCAACATTAAGCAATTC
                      ____________________________________________________________
consensus             TAACACATTGCTTTGCTGTGATTGCTGAGTCAAGGCTGTCTTTTCAACATTAAGCAATTC
 
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rJMSF027F15-          CACCTTTCTCATTAGTGCTTCAGCTTCATCCACCTGTCCAGCTTCACCAAGAGACTCCAC
rJMSF031D02-          CACCTTTCTCATTAGTGCTTCAGCTTCATCCACCTGTCCAGCTTCACCAAGAGACTCCAC
                      ____________________________________________________________
consensus             CACCTTTCTCATTAGTGCTTCAGCTTCATCCACCTGTCCAGCTTCACCAAGAGACTCCAC
 
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rJMSF027F15-          TTGNTCCAGTAAGTTCTTAATCTTTTCTTCCAGAACAGATAACTGCTCAGAATTTTCTGC
rJMSF031D02-          TTGTTCCAGTAAGTTCTTAATCTTTTCTTCCAGAACAGATAACTGCTCAGATTTTTCTGC
                      ____________________________________________________________
consensus             TTGTTCCAGTAAGTTCTTAATCTTTTCTTCCAGAACAGATAACTGCTCAGATTTTTCTGC
 
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rJMSF027F15-          TGAAATTGGGGGANGTGGGGGAGGCACATCCTCTTGATCAAGGCGTTCTCGACC      
rJMSF031D02-          TGAAATTGGGGGAGGTGGGGGAGGCACATCCTCTTGATCAAGGCGTTCTCGACCACGCCT
                      ____________________________________________________________
consensus             TGAAATTGGGGGAGGTGGGGGAGGCACATCCTCTTGATCAAGGCGTTCTCGACCACGCCT
 
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rJMSF031D02-          AACTCTTCTATCTAGGTCCATAACCAACTTCTCACAAAAATGAGCTAGCTCTCCTTCAAA
                      ____________________________________________________________
consensus             AACTCTTCTATCTAGGTCCATAACCAACTTCTCACAAAAATGAGCTAGCTCTCCTTCAAA
 
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rJMSF031D02-          CTTGGGAACATATGAATCATGTCTTGGGGACGTCTCAAAACTTTCCTTCAACTTTGGATC
                      ____________________________________________________________
consensus             CTTGGGAACATATGAATCATGTCTTGGGGACGTCTCAAAACTTTCCTTCAACTTTGGATC
 
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rJMSF031D02-          ATGAACTTTTGGACATGGTCCCAAATCACTCCGAGTATTGACAAACAAATCATGGGGGCA
JMSF027F15+                              CCCAAATCACTCCGAGTATTGACAAACAAATCATGGGGGCA
JMSF031D02+                              CCCAAATCACTCCGAGTATTGACAAACAAATCATGGGGGCA
                      ____________________________________________________________
consensus             ATGAACTTTTGGACATGGTCCCAAATCACTCCGAGTATTGACAAACAAATCATGGGGGCA
 
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rJMSF031D02-          AAACCGAACCATATAGAATCGACAAACTTCCTTGTCATCCCATGTGAGTTCCTTGTAACC
JMSF027F15+           AAACCGAACCATATAGAATCGACAAACTTCCTTGTCATCCCATGTGAGTTCCTTGTAACC
JMSF031D02+           AAACCGAACCATATAGAATCGACAAACTTCCTTGTCATCCCATGTGAGTTCCTTGTAACC
                      ____________________________________________________________
consensus             AAACCGAACCATATAGAATCGACAAACTTCCTTGTCATCCCATGTGAGTTCCTTGTAACC
 
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rJMSF031D02-          CTTCCTTTCTTCTTCAGTTAA                                       
JMSF027F15+           CTTCCTTTCTTNTTCAGTTAAATTACGAGATGCGCCCATAAGTTCATCGAGCAATGCTCG
JMSF031D02+           CTTCCTTTCTTCTTCAGTTAAATTACGAGATGCGCCCATAAGTTCATCGAGCAATGCTCG
                      ____________________________________________________________
consensus             CTTCCTTTCTTCTTCAGTTAAATTACGAGATGCGCCCATAAGTTCATCGAGCAATGCTCG
 
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JMSF027F15+           CTGAGCATCCATGACGGAGATTTCTGGAGAAGGTGAGAGAGACGAAGCACAGCCGGCGCT
JMSF031D02+           CTGAGCATCCATGACGGAGATTTCTGGAGAAGGTGAGAGAGACGAAGCACAGCCGGCGCT
                      ____________________________________________________________
consensus             CTGAGCATCCATGACGGAGATTTCTGGAGAAGGTGAGAGAGACGAAGCACAGCCGGCGCT
 
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JMSF027F15+           CAAACCGTCGGAATGTTTAGGATNTGATGCGANTATGTGAGCAGATATGATAGGAGAGGT
JMSF031D02+           CAAACCGTCGGAATGTTTAGGATTTGATGCGACTATGTGAGCAGATATGATAGGAGAGGT
                      ____________________________________________________________
consensus             CAAACCGTCGGAATGTTTAGGATTTGATGCGACTATGTGAGCAGATATGATAGGAGAGGT
 
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JMSF027F15+           GAGTTTTCAGCCACGGTTAGGGTTTCATCAAAATCAACAAAATCTNTGAAGATTGTTGTC
JMSF031D02+           GAGTTTTCAGCCACGGTTAGGGTTTCATCAAAATCAACAAAATCTCTGAAGATTGTTGTC
                      ____________________________________________________________
consensus             GAGTTTTCAGCCACGGTTAGGGTTTCATCAAAATCAACAAAATCTCTGAAGATTGTTGTC
 
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JMSF027F15+           AGCT                                                        
JMSF031D02+           AGCTGAGTAGCTCGGTTTCGTGGCTTGGCATTTGATGATAATTGATACTGAACCCGAGTC
                      ____________________________________________________________
consensus             AGCTGAGTAGCTCGGTTTCGTGGCTTGGCATTTGATGATAATTGATACTGAACCCGAGTC