Contig 000821:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035E12-                                TGACTGTTATAGCATAAAATAAAACACTGGTTTAGCAA
rJMSF031A07-                                           GCATAAAATAAAACACTGGTTTAGCAA
                      ____________________________________________________________
consensus                                   TGACTGTTATAGCATAAAATAAAACACTGGTTTAGCAA
 
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rJMSF035E12-          ATCCTCCTAAGCACACACCTACACTATTAAGTTACAGCCATAAGAAATGAAATGAAATGA
rJMSF031A07-          ATCCTCCTAAGCACACACCTACACTATTAAGTTACAGCCATAAGAAATGAAATGAAATGA
                      ____________________________________________________________
consensus             ATCCTCCTAAGCACACACCTACACTATTAAGTTACAGCCATAAGAAATGAAATGAAATGA
 
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rJMSF035E12-          AATGAAAACATGAAAGAACTTGGGTGATGGCAGTAGAGCTCCCATTCCTTCACCCAACCA
rJMSF031A07-          AATGAAAACATGAAAGAACTTGGGTGATGGCAGTAGAGCTCCCATTCCTTCACCCAACCA
                      ____________________________________________________________
consensus             AATGAAAACATGAAAGAACTTGGGTGATGGCAGTAGAGCTCCCATTCCTTCACCCAACCA
 
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rJMSF035E12-          CCTCTGTATTTGTGTCATCTGATGGCCAAATCACTGTCTCCATGAGTCGTTCACGCATCA
rJMSF031A07-          CCTCTGTATTTGTGTCATCTGATGGCCAAATCACTGTCTCCATGAGTCGTTCACGCATCA
                      ____________________________________________________________
consensus             CCTCTGTATTTGTGTCATCTGATGGCCAAATCACTGTCTCCATGAGTCGTTCACGCATCA
 
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rJMSF035E12-          CCTCCAAGTTCTGATCAGATATTTGGTTATACAGTTCATCATGGTCGCATTTCTTTATCC
rJMSF031A07-          CCTCCAAGTTCTGATCAGATATTTGGTTATACAGTTCATCATGGTCGCATTTCTTTATCC
                      ____________________________________________________________
consensus             CCTCCAAGTTCTGATCAGATATTTGGTTATACAGTTCATCATGGTCGCATTTCTTTATCC
 
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rJMSF035E12-          ATTTTCCATAGAGGTGCAGTCGTGTTATCATCACTCTTTCTGCAAGGTCTTGTTTTTCCT
rJMSF031A07-          ATTTTCCATAGAGGTGCAGTCGTGTTATCATCACTCTTTCTGCAAGGTCTTGTTTTTCCT
JMSF035E12+                                                                      T
                      ____________________________________________________________
consensus             ATTTTCCATAGAGGTGCAGTCGTGTTATCATCACTCTTTCTGCAAGGTCTTGTTTTTCCT
 
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rJMSF035E12-          TTACAAGATTGCGAATGAAATGCTTCCCATCTCTAGGCTTATTTGTTTCTATAAATCCAT
rJMSF031A07-          TTACAAGATTGCGAATGAAATGCTTCCCATCTCTAGGCTTATTTGTTTCTATAAATCCAT
JMSF035E12+           TTACAAGATTGCGAATGAAATGCTTCCCATCTCTAGGCTTATTTGTTTCTATAAATCCAT
                      ____________________________________________________________
consensus             TTACAAGATTGCGAATGAAATGCTTCCCATCTCTAGGCTTATTTGTTTCTATAAATCCAT
 
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rJMSF035E12-          TGAGCCATTGATACTGTGGAGGGTTCATTTCCTGAAGCTGGTCTAGAACAGTCATCACAG
rJMSF031A07-          TGAGCCATTGATACTGTGGAGGGTTCATTTCCTGAAGCTGGTCTAGAACAGTCATCACAG
JMSF035E12+           TGAGCCATTGATACTGTGGAGGGTTCATTTCCTGAAGCTGGTCTAGAACAGTCATCACAG
JMSF031A07+                                           TGAAGCTGGTCTAGAACAGTCATCACAG
                      ____________________________________________________________
consensus             TGAGCCATTGATACTGTGGAGGGTTCATTTCCTGAAGCTGGTCTAGAACAGTCATCACAG
 
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rJMSF035E12-          CTTTGTATGTGAAATAGTTGAGAATTTGTGATTTCACATCTTCAAATGTCTCTTCATACT
rJMSF031A07-          CTTTGTATGTGAAATAGTTGAGAATTTGTGATTTCACATCTTCAAATGTCTCTTCATACT
JMSF035E12+           CTTTGTATGTGAAATAGTTGAGAATTTGTGATTTCACATCTTCAAATGTCTCTTCATACT
JMSF031A07+           CTTTGTATGTGAAATAGTTGAGAATTTGTGATTTCACATCTTCAAATGTCTCTTCATACT
                      ____________________________________________________________
consensus             CTTTGTATGTGAAATAGTTGAGAATTTGTGATTTCACATCTTCAAATGTCTCTTCATACT
 
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rJMSF035E12-          GACCACCCAACTCATTCACCACTGTAAAGCCCCTCTTTTTTGGCTGCTTCTGCTTCTTCA
rJMSF031A07-          GACCACCCAACTCATTCACCACTGTAAAGCCCCTCTTTTTTGGCTGCTTCTGCTTCTTCA
JMSF035E12+           GACCACCCAACTCATTCACCACTGTAAAGCCCCTCTTTTTTGGCTGCTTCTGCTTCTTCA
JMSF031A07+           GACCACCCAACTCATTCACCACTGTAAAGCCCCTCTTTTTTGGCTGCTTCTGCTTCTTCA
                      ____________________________________________________________
consensus             GACCACCCAACTCATTCACCACTGTAAAGCCCCTCTTTTTTGGCTGCTTCTGCTTCTTCA
 
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rJMSF035E12-          AACTGCTGAAATTTCCCCTTTGCCCTTTACCCAACCCCCTCCTATCCAGAAATGAAGTGC
rJMSF031A07-          AACTGCTGAAATTTCCCCTTTGCCCTTTACCCAACCCCCTCCTATCCAGAAATGAAGTGC
JMSF035E12+           AACTGCTGAAATTTCCCCTTTGCCCTTTACCCAACCCCCTCCTATCCAGAAATGAAGTGC
JMSF031A07+           AACTGCTGAAATTTCCCCTTTGCCCTTTACCCAACCCCCTCCTATCCAGAAATGAAGTGC
                      ____________________________________________________________
consensus             AACTGCTGAAATTTCCCCTTTGCCCTTTACCCAACCCCCTCCTATCCAGAAATGAAGTGC
 
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rJMSF035E12-          TCAATTCCAATGAACCTGGGGTTTTAATCTGCCTTCTGCAGAGTGATGTTGAANAAGAAT
rJMSF031A07-          TCAATTCCAATGAACCTGGGGTTTTAATCTGCCTTCTGCAGAGTGATGTTGAAGAAGAAT
JMSF035E12+           TCAATTCCAATGAACCTGGGGTTTTAATCTGCCTTCTGCAGAGTGATGTTGAAGAAGAAT
JMSF006I09+                                           CTTCTGCAGAGTGATGTTGAAGAAGAAT
JMSF031A07+           TCAATTCCAATGAACCTGGGGTTTTAATCTGCCTTCTGCAGAGTGATGTTGAAGAAGAAT
                      ____________________________________________________________
consensus             TCAATTCCAATGAACCTGGGGTTTTAATCTGCCTTCTGCAGAGTGATGTTGAAGAAGAAT
 
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rJMSF035E12-          TCCTATGTAA                                                  
rJMSF031A07-          TCCTATGT-AAGCTAAATCCCCACTGCTCAGATT                          
JMSF035E12+           TCCTATGTAAAGCTAAATCCCCACTGCTCAGATTACACGAAGGCAGAGCATCCAAACACA
JMSF006I09+           TCCTATGTAAAGCTAAATCCCCACTGCTCAGATTACACGAAGGCAGAGCATCCAAACACA
JMSF031A07+           TCCTATGTAAAGCTAAATCCCCACTGCTCAGATTACACGAAGGCAGAGCATCCAAACACA
                      ____________________________________________________________
consensus             TCCTATGTAAAGCTAAATCCCCACTGCTCAGATTACACGAAGGCAGAGCATCCAAACACA
 
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JMSF035E12+           AGCATGGACTGGAATGAGAGTCCATCACCATTGATGAAACCACTACACCCAAAGTCCCCA
JMSF006I09+           AGCATGGACTGGAATGAGAGTCCATCACCATTGATGAAACCACTACACCCAAAGTCCCCA
JMSF031A07+           AGCATGGACTGGAATGAGAGTCCATCACCATTGATGAAACCACTACACCCAAAGTCCCCA
                      ____________________________________________________________
consensus             AGCATGGACTGGAATGAGAGTCCATCACCATTGATGAAACCACTACACCCAAAGTCCCCA
 
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JMSF035E12+           TCACTGACACCCAGAATCAAGAATTCCAATGAAACTGAGACACAACAAACCCTGTGGCGA
JMSF006I09+           TCACTGACACCCAGAATCAAGAATTCCAATGAAACTGAGACACAACAAACCCTGTGGCGA
JMSF031A07+           TCACTGACACCCAGAATCAAGAATTCCAATGAAACTGAGACACAACAAACCCTGTGGCGA
                      ____________________________________________________________
consensus             TCACTGACACCCAGAATCAAGAATTCCAATGAAACTGAGACACAACAAACCCTGTGGCGA
 
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JMSF035E12+           AAATCAAGGAAGCAGAAATGGGTTCTCAAGAAACCTGGAGAAAAGCAAGAAAAGAGAAGT
JMSF006I09+           AAATCAAGGAAGCAGAAATGGGTTCTCAAGAAACCTGGAGAAAAGCAAGAAAAGAGAAGT
JMSF031A07+           AAATCAAGGAAGCAGAAATGGGTTCTCAAGAAACCTGGAGAAAAGCAAGAAAAGAGAAGT
                      ____________________________________________________________
consensus             AAATCAAGGAAGCAGAAATGGGTTCTCAAGAAACCTGGAGAAAAGCAAGAAAAGAGAAGT
 
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JMSF035E12+           GGGTTTTCAAGAAAGCTGGAGATT                                    
JMSF006I09+           GGGTTTTCAAGAAAGCTGGAGATTGGCAGGTGAATTTAGAGATTCATGCCCTTATACTAA
JMSF031A07+           GGGTTTTCAAGAAAGCTGGAGATTGGCAGGTGAATTTAGAGATTCATGCCCTTATACTAA
                      ____________________________________________________________
consensus             GGGTTTTCAAGAAAGCTGGAGATTGGCAGGTGAATTTAGAGATTCATGCCCTTATACTAA
 
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JMSF006I09+           AAGGGTAGC                                                   
JMSF031A07+           AAGGGTAGCAGGTTCAACTTTGATTTCTTTGCAGGTTACGGAAGTGAGGTGATCTAGACC
                      ____________________________________________________________
consensus             AAGGGTAGCAGGTTCAACTTTGATTTCTTTGCAGGTTACGGAAGTGAGGTGATCTAGACC