Contig 000820:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018H18Sequence480000820 (3)ref|XP_008229180.1|4e-44PREDICTED: protein YIF1B-like [Prunus mume] ref|XP_008229181.1| PREDICTED: prote769000820 (3)ref|XP_004242386.2|3e-116PREDICTED: protein YIF1B isoform X1 [Solanum lycopersicum]
JMSF030P08Sequence645000820 (3)ref|XP_004242386.2|8e-75PREDICTED: protein YIF1B isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF018H18-                                                  GTCTGATCTTGGTCATTTCC
                      ____________________________________________________________
consensus                                                     GTCTGATCTTGGTCATTTCC
 
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rJMSF018H18-          TTTTCTCCCTCAATTTGTACACCACGTTTATGGTACATTTTTGTTGGACAAAAGATACAT
                      ____________________________________________________________
consensus             TTTTCTCCCTCAATTTGTACACCACGTTTATGGTACATTTTTGTTGGACAAAAGATACAT
 
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rJMSF018H18-          TAGATGAGAACTCTGTCAAATATTCAGAAAAGTACCACAAAGATATTACAGAAAAATAAA
                      ____________________________________________________________
consensus             TAGATGAGAACTCTGTCAAATATTCAGAAAAGTACCACAAAGATATTACAGAAAAATAAA
 
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rJMSF018H18-          AAAATTGTTCAACAAAATTGACAGTAAGTTCTATAGCTATGGAGGTAAGGGGGCGGTACT
                      ____________________________________________________________
consensus             AAAATTGTTCAACAAAATTGACAGTAAGTTCTATAGCTATGGAGGTAAGGGGGCGGTACT
 
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rJMSF018H18-          TCAAAAGAACCAACTAATGCTAATCTTTCCAAGCCAGAAGAGAAGGGGGAACTGAGAGAG
                      ____________________________________________________________
consensus             TCAAAAGAACCAACTAATGCTAATCTTTCCAAGCCAGAAGAGAAGGGGGAACTGAGAGAG
 
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rJMSF018H18-          GGCGACAAAGAGGAGGATATAATGATGCCTGCTTGAATCGTAAGTCCTCACCTCTGCAAA
                      ____________________________________________________________
consensus             GGCGACAAAGAGGAGGATATAATGATGCCTGCTTGAATCGTAAGTCCTCACCTCTGCAAA
 
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rJMSF018H18-          GAGTGCCCTCTTCATTGTTTTCACAAGGAATATCCCCATGCATAGACCAGCCCATGGCAT
                      ____________________________________________________________
consensus             GAGTGCCCTCTTCATTGTTTTCACAAGGAATATCCCCATGCATAGACCAGCCCATGGCAT
 
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rJMSF018H18-          CAAAAAGTAGTAGGAATAGTTCCATAAAATCTTCCCCAAGATAGCCACCGACAAACCCGC
                      ____________________________________________________________
consensus             CAAAAAGTAGTAGGAATAGTTCCATAAAATCTTCCCCAAGATAGCCACCGACAAACCCGC
 
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rJMSF018H18-          AAAAGTGTATCCTGCATATGCCACAATGTCCAGCAAAGGTGCTTCTCCACTACCAAGTGA
                      ____________________________________________________________
consensus             AAAAGTGTATCCTGCATATGCCACAATGTCCAGCAAAGGTGCTTCTCCACTACCAAGTGA
 
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rJMSF018H18-          GAAAAGTGTCATCTTCAGCAATGAAACTTGTAAAAACCAGCCAACCAAACCCTTCATGAA
                      ____________________________________________________________
consensus             GAAAAGTGTCATCTTCAGCAATGAAACTTGTAAAAACCAGCCAACCAAACCCTTCATGAA
 
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rJMSF018H18-          CAGCCAGTTTAGGGCTTCAGGGCTAAACCTTCCCTGGAGA-CCCAATGATAAACCAGCGA
JMSF030P08+                          TTCAGGGCTAAACCTTCCCTGGAGACCCCAATGATAAACCAGCAA
                      ____________________________________________________________
consensus             CAGCCAGTTTAGGGCTTCAGGGCTAAACCTTCCCTGGAGACCCCAATGATAAACCAGCGA
 
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rJMSF018H18-          GAACTACATACGTGCCAAATGCCATAAATGGGATATACNAATCTGGGGCATTTATGTCAT
JMSF030P08+           GAACAACATACGTGCCAAATGCCATAAATGGGATATACAAATCTGGAGCATTTATGTCAT
                      ____________________________________________________________
consensus             GAACTACATACGTGCCAAATGCCATAAATGGGATATACAAATCTGGGGCATTTATGTCAT
 
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rJMSF018H18-          AGATTGGGGGCTTATAGGAAAGCCTACCACCTACTGGTTCAGTAATCCTTGTCCAATGAC
JMSF018H18+                                           ACTGGTTCAGTAATCCTTGTCCAATGAC
JMSF030P08+           AGATTGGGGGCTTATAGGAAAGCCTACCACCTACTGGCTCAGTGATCCTTGTCCAATGAC
                      ____________________________________________________________
consensus             AGATTGGGGGCTTATAGGAAAGCCTACCACCTACTGGTTCAGTAATCCTTGTCCAATGAC
 
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rJMSF018H18-          CCCTATGCAGGAACGGGAAA                                        
JMSF018H18+           CCCTATGCAGGAACGGGAAAAGTACAACTTTCAATTTGTTCCTCACATATTGGTCATTGA
JMSF030P08+           CCCTATGTAGGAATGGGAAAAGTACAACTTTCAATTTGTTCCTCACATATTGGTCATTGA
                      ____________________________________________________________
consensus             CCCTATGCAGGAACGGGAAAAGTACAACTTTCAATTTGTTCCTCACATATTGGTCATTGA
 
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JMSF018H18+           CTTGGAAGTAGTATTGGGGATCAGAAAAGTATCTACTAATATTGCTTTGTACGTATTCAG
JMSF030P08+           CTTGGAAGTAGTATTGGGGATCAGAAAAGTATCTACTAATATTGCTTTGTACGTATTCAG
                      ____________________________________________________________
consensus             CTTGGAAGTAGTATTGGGGATCAGAAAAGTATCTACTAATATTGCTTTGTACGTATTCAG
 
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JMSF018H18+           AGCTTGAACCAAGAATTTTCTCTCCATAGGCACCTAATCCACCTCTTATTAAACCAGACC
JMSF030P08+           AGCTTGAACCAAGAATTTTCTCTCCATAGGCACCTAATCCACCTCTTATTAAACCAGACC
                      ____________________________________________________________
consensus             AGCTTGAACCAAGAATTTTCTCTCCATAGGCACCTAATCCACCTCTTATTAAACCAGACC
 
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JMSF018H18+           CTGCACCATAGAATGCATTTCCAAATGGATTTGGCTGCTGCATAGTAGGCGGTATAGGAA
JMSF030P08+           CTGCACCATAGAATGCATTTCCAAATGGATTTGGCTGCTGCATAGTAGGCGGTCTAGGAA
                      ____________________________________________________________
consensus             CTGCACCATAGAATGCATTTCCAAATGGATTTGGCTGCTGCATAGTAGGCGGTCTAGGAA
 
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JMSF018H18+           CACCAGCCTGTGCTCCAAGATTATCATACATATCT                         
JMSF030P08+           CTCCAGACTGTGCTCCAAGATTATCATACATATCTCCACAGATCTAAAACGGGCACGCTT
                      ____________________________________________________________
consensus             CTCCAGCCTGTGCTCCAAGATTATCATACATATCTCCACAGATCTAAAACGGGCACGCTT
 
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JMSF030P08+           TTCGCTGAAATGAAAAAAATTTCCTTTATGTCTTGATATCTCAATAAGTCAATGAAGAGC
                      ____________________________________________________________
consensus             TTCGCTGAAATGAAAAAAATTTCCTTTATGTCTTGATATCTCAATAAGTCAATGAAGAGC
 
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JMSF030P08+           TGAAAAGAAGAAGACAAGGAAGCTAGGGATCGGAATCCGCAGAGCGAGGAGAATTTGGAA
                      ____________________________________________________________
consensus             TGAAAAGAAGAAGACAAGGAAGCTAGGGATCGGAATCCGCAGAGCGAGGAGAATTTGGAA
 
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JMSF030P08+           ACCGTGTATGGGTCGATGGCTTCAGTCGATCTGAACCCGATTGTTCCGTGGATCACATTC
                      ____________________________________________________________
consensus             ACCGTGTATGGGTCGATGGCTTCAGTCGATCTGAACCCGATTGTTCCGTGGATCACATTC