| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022I01 | Sequence | 347 | 000817 (10) | ref|XP_009588165.1| | 4e-26 | PREDICTED: sodium-coupled neutral amino acid transporter 1-like isoform X4 [Nic | 733 | 000817 (10) | ref|XP_009765989.1| | 3e-73 | PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Nicotiana |
| JMFF026K03 | Sequence | 540 | 000817 (10) | ref|XP_009588163.1| | 1e-61 | PREDICTED: sodium-coupled neutral amino acid transporter 5-like isoform X3 [Nic | 747 | 013739 (2) | ref|XP_009765989.1| | 6e-84 | PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Nicotiana |
| JMFF028N16 | Sequence | 557 | 000817 (10) | ref|XP_009588163.1| | 2e-66 | PREDICTED: sodium-coupled neutral amino acid transporter 5-like isoform X3 [Nic | 721 | 013739 (2) | ref|XP_009765989.1| | 2e-59 | PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Nicotiana |
| JMFF032M19 | Sequence | 546 | 000817 (10) | ref|XP_009588163.1| | 1e-63 | PREDICTED: sodium-coupled neutral amino acid transporter 5-like isoform X3 [Nic | |||||
| JMFF043L02 | Sequence | 617 | 000817 (10) | ref|XP_009588163.1| | 2e-81 | PREDICTED: sodium-coupled neutral amino acid transporter 5-like isoform X3 [Nic | |||||
| JMSF030M20 | Sequence | 640 | 000817 (10) | ref|XP_009588163.1| | 2e-80 | PREDICTED: sodium-coupled neutral amino acid transporter 5-like isoform X3 [Nic | 654 | 000817 (10) | ref|XP_009765989.1| | 1e-76 | PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Nicotiana |
| JMSF052B22 | Sequence | 641 | 000817 (10) | ref|XP_009588163.1| | 1e-80 | PREDICTED: sodium-coupled neutral amino acid transporter 5-like isoform X3 [Nic | 866 | 000817 (10) | ref|XP_009618527.1| | 9e-112 | PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMFF022I01- TT
____________________________________________________________
consensus TT
. : . : . : . : . : . :
rJMFF022I01- CNTATGATCTTTGAAACATANAGGGGATATTTTTTACAGAAATTTCCCANAACTCTCACA
____________________________________________________________
consensus CNTATGATCTTTGAAACATANAGGGGATATTTTTTACAGAAATTTCCCANAACTCTCACA
. : . : . : . : . : . :
rJMFF022I01- ATTGGCCAAACAATCCCTTGTAGAACACACACAATAACAGATACACACAGACACTCCTTT
____________________________________________________________
consensus ATTGGCCAAACAATCCCTTGTAGAACACACACAATAACAGATACACACAGACACTCCTTT
. : . : . : . : . : . :
rJMSF030M20- AAGTTGTATACATTGGTGTA
rJMFF022I01- CATGGAAACACAAGGAAACTATGAAGTGGTTCCACTGAACAAGTTGTATACATTGGTGTA
rJMSF052B22- AAGTTGTATACATTGGTGTA
____________________________________________________________
consensus CATGGAAACACAAGGAAACTATGAAGTGGTTCCACTGAACAAGTTGTATACATTGGTGTA
. : . : . : . : . : . :
rJMSF030M20- AATAGCTAAACAGCTAGTTATGATCGCTTGAACGATCATGATTGTCGCTATAATCTTGTC
rJMFF022I01- AATAGCTAAACAGCTAGTTATGATCGCTTGAACGATCATGATTGTCGCTATAATCTTGTC
rJMSF052B22- AATAGCTAAACAGCTAGTTATGATCGCTTGAACGATCATGATTGTCGCTATAATCTTGTC
____________________________________________________________
consensus AATAGCTAAACAGCTAGTTATGATCGCTTGAACGATCATGATTGTCGCTATAATCTTGTC
. : . : . : . : . : . :
rJMSF030M20- CTTTTTAGTAGATATTCCATGGATATCTCTTAAAGCAATGGCGCCGGGGAAGATGAAGGC
rJMFF022I01- CTTTTTAGTAGATATTCCATGGATATCTCTTAAAGCAATGGCGCCGGGGAAGATGAAGGC
rJMSF052B22- CTTTTTAGTAGATATTCCATGGATATCTCTTAAAGCAATGGCGCCGGGGAAGATGAAGGC
____________________________________________________________
consensus CTTTTTAGTAGATATTCCATGGATATCTCTTAAAGCAATGGCGCCGGGGAAGATGAAGGC
. : . : . : . : . : . :
rJMSF030M20- GAGACACACAGCAGAAGTTGATCCCATGAACTGGAAAATGTACCATATGCTAGGAATAAG
rJMFF022I01- GAGACACACAGCAGAAGTTGATCCCATGAACTGGAAAATGTACCATATGCTAGGAATAAG
rJMSF052B22- GAGACACACAGCAGAAGTTGATCCCATGAACTGGAAAATGTACCATATGCTAGGAATAAG
____________________________________________________________
consensus GAGACACACAGCAGAAGTTGATCCCATGAACTGGAAAATGTACCATATGCTAGGAATAAG
. : . : . : . : . : . :
rJMSF030M20- CATAGCAGCAACATAGGACAAGGCTAACAGGAACACAGACNGAGACACGAATCTGATCTT
rJMFF022I01- CATAGCAGCAACATAGGACAAGGCTAACAGGAACACAGACAGAGACACGAATCTGATCTT
rJMSF052B22- CATAGCAGCAACATAGGACAAGGCTAACAGGAACACAGACAGAGACACGAATCTGATCTT
____________________________________________________________
consensus CATAGCAGCAACATAGGACAAGGCTAACAGGAACACAGACAGAGACACGAATCTGATCTT
. : . : . : . : . : . :
rJMSF030M20- GTCCGTGGCCAAGTCCGGCTTCTTGGGGAACAAGAGTTCATCAATGGTGGCCCTCAGCGA
rJMFF022I01- GTCCGTGGCCAAGTCCGGCTTCTTGGGGAACAAGAGTTCATCAATGGTGGCCCTCAGCGA
rJMSF052B22- GTCCGTGGCCAAGTCCGGCTTCTTGGGGAACAAGAGTTCATCAATGGTGGCCCTCAGCGA
____________________________________________________________
consensus GTCCGTGGCCAAGTCCGGCTTCTTGGGGAACAAGAGTTCATCAATGGTGGCCCTCAGCGA
. : . : . : . : . : . :
rJMSF030M20- GTAGTTCAACAATGGGAACACGAGCACCAGGTGCACGGCGTAGCTCAGCCGGACAACATC
rJMFF022I01- GTAGTTCAACAATGGGAACACGAGCACCAGGTGCACGGCGTAGCTCAGCCGGACAACATC
rJMSF052B22- GTAGTTCAACAATGGGAACACGAGCACCAGGTGCACGGCGTAGCTCAGCCGGACAACATC
____________________________________________________________
consensus GTAGTTCAACAATGGGAACACGAGCACCAGGTGCACGGCGTAGCTCAGCCGGACAACATC
. : . : . : . : . : . :
rJMSF030M20- ATTCAGCAATGCACTAACCGCGGAACTAGATGAAGACTGATCGAAGTTCACAAGGATATC
rJMFF022I01- ATTCAGCAATGCACTAACCGCGGAACTAGATGAAGACTGATCGAAGTTCACAAGGATATC
rJMSF052B22- ATTCAGCAATGCACTAACCGCGGAACTAGATGAAGACTGATCGAAGTTCACAAGGATATC
____________________________________________________________
consensus ATTCAGCAATGCACTAACCGCGGAACTAGATGAAGACTGATCGAAGTTCACAAGGATATC
. : . : . : . : . : . :
rJMSF030M20- AGCATTGATTGATTCCCCGAACAGAANGTATCCGAAAATCCCAATCATGAAATAGAGACC
rJMFF022I01- AGCATTGATTGATTCCCCGAACAGAAGGTATCCGAAAATCCCAATCATGAAATAGAGACC
rJMSF052B22- AGCATTGATTGATTCCCCGAACAGAAGGTATCCGAAAATCCCAATCATGAAATAGAGACC
____________________________________________________________
consensus AGCATTGATTGATTCCCCGAACAGAAGGTATCCGAAAATCCCAATCATGAAATAGAGACC
. : . : . : . : . : . :
rJMSF030M20- GGCACAAAGTACTAGTGAAATCTTCACAGCAG
rJMFF022I01- GGCACAAAGTACTAGTGAAATCTTCACAGCAG
rJMSF052B22- GGCACAAAGTACTAGTGAAATCTTCACAGCAGTTGCCATGGTAGAAGGTTTGCCTAACTC
____________________________________________________________
consensus GGCACAAAGTACTAGTGAAATCTTCACAGCAGTTGCCATGGTAGAAGGTTTGCCTAACTC
. : . : . : . : . : . :
rJMSF052B22- AATTCCAATAGGATGAACATTGAAGTGAAATGTGAAGGCTGAAACAATTACAGGAACAGC
____________________________________________________________
consensus AATTCCAATAGGATGAACATTGAAGTGAAATGTGAAGGCTGAAACAATTACAGGAACAGC
. : . : . : . : . : . :
rJMSF052B22- TGTGAAAAGTTGGATGAAGGAAGAAGCACTGCCATCCAATTCGGGCAGCATTCTCGGGGT
____________________________________________________________
consensus TGTGAAAAGTTGGATGAAGGAAGAAGCACTGCCATCCAATTCGGGCAGCATTCTCGGGGT
. : . : . : . : . : . :
rJMSF052B22- CTCGGTTTTACCCTTAACGAGGGCATAGATTGCCATCCCTATGCATATTCCAACAAACAC
JMSF052B22+ GGCATAGATTGCCATCCCTATGCATATTCCAACAAACAC
JMFF043L02+ GGCATAGATTGCCATCCCTATGCATATTCCAACAAACAC
JMSF030M20+ GGCATAGATTGCCATCCCTATGCATATTCCAACAAACAC
____________________________________________________________
consensus CTCGGTTTTACCCTTAACGAGGGCATAGATTGCCATCCCTATGCATATTCCAACAAACAC
. : . : . : . : . : . :
rJMSF052B22- AACTGCTAGGAGTACTGCTATGGCTGAACTCCACCATAATGACTCTACAC
JMSF052B22+ AACTGCTAGGAGTACTGCTATGGCTGAACTCCACCATAATGACTCTACACGGCGGTAACA
JMFF043L02+ AACTGCTAGGAGTACTGCTATGGCTGAACTCCACCATAATGACTCTACACGGCGGTAACA
JMFF032M19+ CGGTAACA
JMFF028N16+ A
JMSF030M20+ AACTGCTAGGAGTACTGCTATGGCTGAACTCCACCATAATGACTCTACACGGCGGTAACA
____________________________________________________________
consensus AACTGCTAGGAGTACTGCTATGGCTGAACTCCACCATAATGACTCTACACGGCGGTAACA
. : . : . : . : . : . :
JMSF052B22+ AACGAGAGGAAGCATAACAAAGATTACAACCAAAAAGATGGAGAAAGCTCGTGAGTTCCA
JMFF043L02+ AACGAGAGGAAGCATAACAAAGATTACAACCAAAAAGATGGAGAAAGCTCGTGAGTTCCA
JMFF032M19+ AACGAGAGGAAGCATAACAAAGATTACAACCAAAAAGATGGAGAAAGCTCGTGAGTTCCA
JMFF026K03+ GGAAGCATGACGAAGATGACGACCAAAAAGATGGAGAAAGATCGCGAGTTCCA
JMFF028N16+ AACCAGAGGAAGCATGACGAAGATGACGACCAAAAAGATGGAGAAAGATCGCGAGTTCCA
JMSF030M20+ AACGAGAGGAAGCATAACAAAGATTACAACCAAAAAGATGGAGAAAGCTCGTGAGTTCCA
____________________________________________________________
consensus AACGAGAGGAAGCATAACAAAGATTACAACCAAAAAGATGGAGAAAGCTCGTGAGTTCCA
. : . : . : . : . : . :
JMSF052B22+ CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGAGCCATTTCCACAGAG
JMFF043L02+ CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGAGCCATTTCCACAGAG
JMFF032M19+ CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGAGCCATTTCCACAGAG
JMFF026K03+ CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGTACCATTTCCACATAG
JMFF028N16+ CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGTACCATTTCCACATAG
JMSF030M20+ CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGAGCCATTTCCACAGAG
____________________________________________________________
consensus CCAGTGAATGCCAAACCATTCTTGCAAAATGCCCATGTGTTCTGAGCCATTTCCACAGAG
. : . : . : . : . : . :
JMSF052B22+ AACATCCCCGATGATAATGAGGTACATGATTAAGCAACCGAGATTAGTAATCAGAATACA
JMFF043L02+ AACATCCCCGATGATAATGAGGTACATGATTAAGCAACCGAGATTAGTAATCAGAATACA
JMFF032M19+ AACATCCCCGATGATAATGAGGTACATGATTAAGCAACCGAGATTAGTAATCAGAATACA
JMFF026K03+ AACATCCCCGATGATAATGAGGTACATAATTAAGCAACCAAGATTAGTAATCATAATACA
JMFF028N16+ AACATCCCCGATGATAATGAGGTACATAATTAAGCAACCAAGATTAGTAATCATAATACA
JMSF030M20+ AACATCCCCGATGATAATGAGGTACATGATTAAGCAACCGAGATTAGTAATCAGAATACA
____________________________________________________________
consensus AACATCCCCGATGATAATGAGGTACATGATTAAGCAACCGAGATTAGTAATCAGAATACA
. : . : . : . : . : . :
JMSF052B22+ AATTTGCAGAGCCACAGAGCCAATCTTTCCGAAGTTCTCCTTCATCAAACCGGCGTAAGT
JMFF043L02+ AATTTGCAGAGCCACAGAGCCAATCTTTCCGAGGTTCTCCTTCATCAAACCGGCGTAAGT
JMFF032M19+ AATTTGCAGAGCCACAGAGCCAATCTTTCCGAAGTTCTCCTTCATCAAACCGGCGTAAGT
JMFF026K03+ AATTTGCAGAGCCACAGAGCCAATCTTTCCGAAGTTCTCCTTCATCAGACCGGCGTAAGT
JMFF028N16+ AATTTGCAGAGCCACAGAGCCAATCTTTCCGAAGTTCTCCTTCATCAGACCGGCGTAAGT
JMFF022I01+ CCACAGAGCCAATCTTTCCGAAGTTNTCCTTCATCAAACCGGCGTAAGT
JMSF030M20+ AATTTGCAGAGCCACAGAGCCAATCTTTCCGAAGTTCTCCTTCATCAAACCGGCGTAAGT
____________________________________________________________
consensus AATTTGCAGAGCCACAGAGCCAATCTTTCCGAAGTTCTCCTTCATCAAACCGGCGTAAGT
. : . : . : . : . : . :
JMSF052B22+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATCTACGGATACATCCACCAACAC
JMFF043L02+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGTAAATCTACGGATACATCCACCAACAC
JMFF032M19+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATCTACGGATACATCCACCAACAC
JMFF026K03+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATCAACGGAAACATCCACCAGCAC
JMFF028N16+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATCAACGGAAACATCCACCAGCAC
JMFF022I01+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATNTACGGATACATCCACCAACAC
JMSF030M20+ CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATCTACGGATACATCCACCAACAC
____________________________________________________________
consensus CGACGCGCTGCCGGCGTGCGTGAACCTGAGCAGGAAATCTACGGATACATCCACCAACAC
. : . : . : . : . : . :
JMSF052B22+ GGCCACGATCACCGTCAAAACGAACGCCGGAATCACGCCGAGTACCTTGAGGGTAGCCGG
JMFF043L02+ GGCCACGATCACCGTCAAAACGAACGCCGGAATCACGCCGAGTACCTTGAGGGTAGCCGG
JMFF032M19+ GGCCACGATCACCGTCAAAACGAACGCCGGAATCACGCCGAGTACCTTGAGGGTAGCCGG
JMFF026K03+ GGCCACGACCACCGTCAAAACGAACGCCGGAATCACGCCGAGCACCTTCAGGGTAGCCGG
JMFF028N16+ GGCCACGACCACCGTCAAAACGAACGCCGGAATCACGCCGAGCACCTTCAGGGTAGCCGG
JMFF022I01+ GGCCACGATCACCGTCAAAACGAACGCCGGAATCACGCCGAGTACCTTGAGGGTAGCCGG
JMSF030M20+ GGCCACGATCACCGTCAAAACGAACGCCGGAATCACGCCGAGTACCTTGAGGGTAGCCGG
____________________________________________________________
consensus GGCCACGATCACCGTCAAAACGAACGCCGGAATCACGCCGAGTACCTTGAGGGTAGCCGG
. : . : . : . : . : . :
JMSF052B22+ AATGGACATGATTCCGGCACCGACGATAGTCGTCGACACGTTGAACACCGCCCGGCATAT
JMFF043L02+ AATGGACATGATTCCGGCACCGACGATAGTCGTCGACACGTTGAACACCGCCCGGCATAT
JMFF032M19+ AATGGACATGATTCCGGCACCGACGATAGTCGTCGACACGTTGAACACCGCCCGGCATAT
JMFF026K03+ AACGGACATGATTCCGGCGCCGATGATGCTCGTCGACACGTTAAACACCGCCCGGCATAT
JMFF028N16+ AACGGACATGATTCCGGCGCCGATGATGCTCGTCGACACGTTAAACACCGCCCGGCATAT
JMFF022I01+ AATGGACATGATTCCGGCACCGACGATAGTCGTCGACACGTTGAACACCGCCCGGCATAT
JMSF030M20+ AATGGACATGATTCCGGCACCGACGATAGTCGTCGACACGTTGAACACCGCCCGGCATAT
____________________________________________________________
consensus AATGGACATGATTCCGGCACCGACGATAGTCGTCGACACGTTGAACACCGCCCGGCATAT
. : . : . : . : . : . :
JMSF052B22+ CAGTAGCCTTCTCTCCGTCGGCGTGTCTCTCCTCTGGAGCAGAGGGACGTCGGCTCCGAT
JMFF043L02+ CAGTAGCCTTCTCTCCGTCGGCGTGTCTCTCCTCTGGAGCAGAGGGACGTCGGCTCCGAT
JMFF032M19+ CAGTAGCCTTCTCTCCGTCGGCGTGTCTCTCCTCTGGAGCAGAGGGACGTCGGCTCCGAT
JMFF026K03+ CACCAGCCTTCTCTCCGCCGGCGTGTCTCTCCTCTGGAGCAGCGGCGCGTCAGCTCCGAT
JMFF028N16+ CACCAGCCTTCTCTCCGCCGGCGTGTCTCTCCTCTGGAGCAGCGGCGCGTCAGCTCCGAT
JMFF022I01+ CAGTAGCCTTCTCTCCGTCGGCGTGTCTCTCCTCTGGAGCAGAGGGACGTCGGCTCCGAT
JMSF030M20+ CAGTAGCCTTCTCTCCGTCGGCGTGTCTCTCCTCTGGAGCAGAGGGACGTCGGCTCCGAT
____________________________________________________________
consensus CAGTAGCCTTCTCTCCGTCGGCGTGTCTCTCCTCTGGAGCAGAGGGACGTCGGCTCCGAT
. : . : . : . : . : . :
JMSF052B22+ CACCGGCGACATCCCGGAGAACGGAGAATATGGCTTCCCACTTTTCCTGGTCTATCT
JMFF043L02+ CACCGGCGACATCCCGGAGAACGGAGAATATGGCTTCC
JMFF032M19+ CACCGGCGACATCCCGGAGAACGGAGAATATGGCTTCCCACTTTTCCTGGTCTATCT
JMFF026K03+ CACCGGCGACATCCCGGAGAGCGGAGAAAATGGCTT
JMFF028N16+ CACCGGCGACATCCCGGAGAGCGGAGAAAATGGCTT
JMFF022I01+ CACCGGCGACATCCCGGAGAACGGAGAATATGGCTTCCCACTTTTCCTGGTCTATCT
JMSF030M20+ CACCGGCGACATCCCGGAGAACGGAGAATATGGCTTCCCACTTTTCCTGGTCTATCTTCG
____________________________________________________________
consensus CACCGGCGACATCCCGGAGAACGGAGAATATGGCTTCCCACTTTTCCTGGTCTATCTTCG