clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF017M07 | Sequence | 343 | 000815 (10) | ||||||||
JMFF026C05 | Sequence | 491 | 000815 (10) | gb|AIT97255.1| | 5e-12 | glycine-rich RNA-binding protein 1-3 [Capsicum annuum] gb|AIT97258.1| glycine-ri | 782 | 000815 (10) | gb|EPS70351.1| | 8e-21 | hypothetical protein M569_04412, partial [Genlisea aurea] |
JMFN003D19 | Sequence | 574 | 000815 (10) | gb|EPS70351.1| | 4e-21 | hypothetical protein M569_04412, partial [Genlisea aurea] | |||||
JMFN019M06 | Sequence | 625 | 000815 (10) | gb|ABA81883.1| | 2e-22 | putative glycine-rich RNA binding protein-like [Solanum tuberosum] | |||||
JMFS111B02 | Sequence | 627 | 000815 (10) | gb|ABA81883.1| | 4e-22 | putative glycine-rich RNA binding protein-like [Solanum tuberosum] | |||||
JMSF030J03 | Sequence | 616 | 000815 (10) | gb|ABA81883.1| | 5e-21 | putative glycine-rich RNA binding protein-like [Solanum tuberosum] | 770 | 000815 (10) | gb|ABA81883.1| | 2e-21 | putative glycine-rich RNA binding protein-like [Solanum tuberosum] |
JMSF035E17 | Sequence | 402 | 000815 (10) | 739 | 009573 (15) | gb|ADK73610.1| | 4e-114 | small GTP binding protein [Ipomoea batatas] | |||
JMSF043N22 | Sequence | 431 | 000815 (10) |
This contig is upended
. : . : . : . : . : . :
JMFN003D19+ GAAAATGCAAATCAACGTT
____________________________________________________________
consensus GAAAATGCAAATCAACGTT
. : . : . : . : . : . :
JMFN003D19+ TACATCATTTCTCGAGAACTTTGTAAATACAGATTTACAAACAAATCGAACCACAGATAA
JMSF043N22+ GAACTTTGTAAATACAGATTTACAAACAAATCGAACCACAGATAA
JMSF035E17+ GAACTTTGTAAATACAGATTTACAAACAAATCGAACCACAGATAA
rJMFF017M07- AATACAGATTTACAAACAANTCGAACCACAGATAA
rJMFF026C05- TCATTCCTCGAGAACTTTGTAAATACAGATTTACAAACAAATCGAACCACAGATAA
rJMSF030J03- GATTTACAAACAAATCGAACCACAGATAA
____________________________________________________________
consensus TACATCATTTCTCGAGAACTTTGTAAATACAGATTTACAAACAAATCGAACCACAGATAA
. : . : . : . : . : . :
JMFN003D19+ CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
JMSF043N22+ CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
JMSF035E17+ CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
rJMFF017M07- CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
rJMFF026C05- CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
rJMSF030J03- CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
____________________________________________________________
consensus CCGAAACGGATAACCAGAACACGCAGACTTAAAGTAACACCAAACACCATAGCAGAAGGA
. : . : . : . : . : . :
JMFN003D19+ CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACAATAA
JMSF043N22+ CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACAATAA
JMSF035E17+ CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACAATAA
rJMFF017M07- CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACANTAA
rJMFF026C05- CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACAATAA
rJMSF030J03- CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACAATAA
____________________________________________________________
consensus CCCTAACAAGATCTAATATCTAACAGATCCAGGGACAAAACATTAACCACGCAACAATAA
. : . : . : . : . : . :
JMFN003D19+ AGCTAGATTAGTTCCTCCAGCTTCCATCATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
JMSF043N22+ AGCTAGATTAGTTCCTCCAGCTTCCATCATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
JMSF035E17+ AGCTAGATTAGTTCCTCCAGCTTCCATCATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
rJMFF017M07- AGCTAGATTAGTTCCTCCAGCTTCCATCATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
rJMFF026C05- AGCTAGATTAGTTCCTCCAGCTTCCATCATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
rJMSF030J03- AGCTAGATTAGTTCCTCCAGCTTCCATTATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
____________________________________________________________
consensus AGCTAGATTAGTTCCTCCAGCTTCCATCATCGCCTCCCCTAGAGTAGCGGTCACCTCCGC
. : . : . : . : . : . :
JMFN003D19+ CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
JMSF043N22+ CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
JMSF035E17+ CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
rJMFF017M07- CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
rJMFF026C05- CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
rJMSF030J03- CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
____________________________________________________________
consensus CGTAGCCACCGCCTCCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCGCCAC
. : . : . : . : . : . :
JMFN003D19+ CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCTCCACCCTCACGACGTC
JMSF043N22+ CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCTCCACCCTCACGACGTC
JMSF035E17+ CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCC
rJMFF017M07- CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCTCCACC
rJMFF026C05- CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCTCCACCCTCACGACGTC
rJMSF030J03- CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCTCCACCCTCACGACGTC
____________________________________________________________
consensus CACCATAACCACCTTCCCTGCGGCCACCATAGCCGCCACCGCCTCCACCCTCACGACGTC
. : . : . : . : . : . :
JMFN003D19+ CACCACGGAAACCGCCACCGCCGCCGCCGCCGCCGCTTCCGCGAGACTGAGCCTCGTTAA
JMSF043N22+ CACCACGGAAACCGCCACCGCCGCCGCCGCCGCCGCTTCCGCGAGACTGAGCCTCGTTAA
rJMFF026C05- CACCACGGAAACCGCCACCGCCGCCGCCGCCGCCGCTTCCGCGAGACTGAGCCTCGTTAA
rJMSF030J03- CACCACGGAAACCGCCACCGCCGCCGCCGCCGCCGCTTCCGCGAGACTGAGCCTCGTTAA
JMFN019M06+ CCACGGAAACCGCCACCGCCGCCGCCGCCGCCGGTTCCGCGAGACTGAGCCTCGTTAA
JMFS111B02+ CCGCCGCCGCCGCGCCGGTTTCCGCGAGACTGAGCCTCGTTAA
JMSF030J03+ TGAGCCTCGTTAA
____________________________________________________________
consensus CACCACGGAAACCGCCACCGCCGCCGCCGCCGCCGCTTCCGCGAGACTGAGCCTCGTTAA
. : . : . : . : . : . :
JMFN003D19+ CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
JMSF043N22+ CAGTTATGTTACGCCCGTCAAGAGAC
rJMFF026C05- CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
rJMSF030J03- CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
JMFN019M06+ CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
JMFS111B02+ CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
JMSF030J03+ CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
____________________________________________________________
consensus CAGTTATGTTACGCCCGTCAAGAGACTGGCCGTTCATCCCCTCAATAGCATCCTTCATTG
. : . : . : . : . : . :
JMFN003D19+ CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
rJMFF026C05- CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
rJMSF030J03- CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
JMFN019M06+ CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
JMFS111B02+ CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
JMFF026C05+ CCGGTCTCACGATCGT
JMSF030J03+ CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
____________________________________________________________
consensus CTTGCTCATCCTTGAATGTAACGAAGCCAAAACCTCTGGATCTACCGGTCTCACGATCGT
. : . : . : . : . : . :
JMFN003D19+ TGATGATCTGATCCA
rJMFF026C05- TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATC-ACCAAATCTACNAGCTA
rJMSF030J03- TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATCAACCAAATCTACAAGCTA
JMFN019M06+ TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATCAACCAAATCTACAAGCTA
JMFS111B02+ TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATCAACCAAATCTACAAGCTA
JMFF026C05+ TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATC-ACCAAATCTACAAGCTA
JMSF030J03+ TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATCAACCAAATCTACAAGCTA
____________________________________________________________
consensus TGATGATCTGATCCACAACAAAATTCAACAACAGTCAGAATCAACCAAATCTACAAGCTA
. : . : . : . : . : . :
rJMFF026C05- AAA--ACAATAATAATAGCAACAAACTTAAATACATATATACGTATAGGGGCGAAACACA
rJMSF030J03- AAAACACAATAATAATAGCAACAAACTCAAATACATATATACGTATAGGGGCGAAACACA
JMFN019M06+ AAAACACAATAATAATAGCAACAAACTCAAATACATATATACGTATAGGGGCGAAACACA
JMFS111B02+ AAAACACAATAATAATAGCAACAAACTCAAATACATATATACGTATAGGGGCGAAACACA
JMFF026C05+ AAA--ACAATAATAATAGCAACAAACTTAAATACATATATACGTATAGGGGCGAAACACA
JMSF030J03+ AAAACACAATAATAATAGCAACAAACTCAAATACATATATACGTATAGGGGCGAAACACA
____________________________________________________________
consensus AAAACACAATAATAATAGCAACAAACTCAAATACATATATACGTATAGGGGCGAAACACA
. : . : . : . : . : . :
rJMFF026C05- AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
rJMSF030J03- AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
JMFN019M06+ AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
JMFS111B02+ AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
JMFF026C05+ AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
JMSF030J03+ AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
____________________________________________________________
consensus AAAGCGATCGATCTTAACCTCTCAACAGAAAGAGGAAGATGAACGTACCGTTTCAGGGGA
. : . : . : . : . : . :
rJMFF026C05- AAGTAATAGTAACCAATAGTAACACNGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
rJMSF030J03- AAGTAATAGTAACAAATAGTAACACAGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
JMFN019M06+ AAGTAATAGTAACAAATAGTAACACAGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
JMFS111B02+ AAGTAATAGTAACAAATAGTAACACAGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
JMFF026C05+ AAGTAATAGTAACAAATAGTAACACAGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
JMSF030J03+ AAGTAATAGTAACAAATAGTAACACAGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
____________________________________________________________
consensus AAGTAATAGTAACAAATAGTAACACAGAGAGAGAGAACAGTAGATCAAAGTAACATAGTA
. : . : . : . : . : . :
rJMFF026C05- GTAGTAACA
rJMSF030J03- GTAGTAACAGAGAGATCATGT
JMFN019M06+ GTAGTAACAGAGAGATCATGTCAACAAAGACGAATCGGGTGAAACCGAGATTCGATCACT
JMFS111B02+ GTAGTAACAGAGAGATCATGTCAACAAAGACGAATCGGGTGAAACCGAGATTCGATCACT
JMFF026C05+ GTAGTAACAGAGAGATCATGTCAACAAAGACGAATCGGGTGAAACCGAGATTCGATCACT
JMSF030J03+ GTAGTAACAGAGAGATCATGTCAACAAAGACGAATCGGGTGAAACCGAGATTCGATCACT
____________________________________________________________
consensus GTAGTAACAGAGAGATCATGTCAACAAAGACGAATCGGGTGAAACCGAGATTCGATCACT
. : . : . : . : . : . :
JMFN019M06+ GCTCTGAGACAGACAGACCTTCGATTCGATGACCTCGCCGAAGGAAGAGAACGCATCATG
JMFS111B02+ GCTCTGAGACAGACAGACCTTCGATTCGATGACCTCGCCGAAGGAAGAGAACGCATCATG
JMFF026C05+ GCTCTGAGACAGACAGACCTTCGATTCGATGACCTCGCCGAAGGAAGAGAACGCATCATG
JMSF030J03+ GCTCTGAGACAGACAGACCTTCGATTCGATGACCTCGCCGAAGGAAGAGAACGCATCATG
____________________________________________________________
consensus GCTCTGAGACAGACAGACCTTCGATTCGATGACCTCGCCGAAGGAAGAGAACGCATCATG
. : . : . : . : . : . :
JMFN019M06+ TAGAGAACTTTCAGTGGTGGCCCAGGCCAAACCACCAACGAAGCATCTGAACTCAACTTC
JMFS111B02+ TAGAGAACTTTCAGTGGTGGCCCAGGCCAAACCACCAACGAAGCATCTGAACTCAACTTC
JMFF026C05+ TAGAGAACTTTCAGTGGTGGCCCAGGCCAAACCACCAACGAAGCATCTGAACTCAACTTC
JMSF030J03+ TAGAGAACTTTCAGTGGTGGCCCAGGCCAAACCACCAACGAAGCATCTGAACTCAACTTC
____________________________________________________________
consensus TAGAGAACTTTCAGTGGTGGCCCAGGCCAAACCACCAACGAAGCATCTGAACTCAACTTC
. : . : . : . : . : . :
JMFN019M06+ TGCCATGACTGAAAGGAGAAAATACAA
JMFS111B02+ TGCCATGACTGAAAGGAGAAAATACAAGCAGAAGCTAAAGACTA
JMFF026C05+ TGCCATGACTGAAAGGAGAAAATACAAGCAGAAGCTAAAGACTAGAAGAGAAGACG
JMSF030J03+ TGCCATGACTGAAAGGAGAAAATACAAGCAGAAGCTAAAGACTAGAAGAGAAGACGATCA
____________________________________________________________
consensus TGCCATGACTGAAAGGAGAAAATACAAGCAGAAGCTAAAGACTAGAAGAGAAGACGATCA